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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0060800 |
| Transcript ID | LotjaGi3g1v0060800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger CCCH domain-containing protein; TAIR: AT2G41900.1 CCCH-type zinc finger protein with ARM repeat domain-containing protein; Swiss-Prot: sp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 30; TrEMBL-Plants: tr|I1LVD6|I1LVD6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0060800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6429998..6435092) extracted from Lotus japonicus Gifu genome v1.2.
CATGACTTCATTTGGACTTCATTTGGCGTGCATCTCAGTACCATTTCACTCACTCTGTTCTTAATAAATTCGCCCTAAAT TCTCTTTTCTGCATTTCATTTCCATTTCAATTTCTTCTTCTTCTTCTTCTTCTTCCATGTTTTCTCGCTATCATCGATGG AGAGTGAAGCCTTAACTGTTCTCCGTTTCAGATCTCGTTGCTTCCTCGTTTTCCTTGCATCTTCTCCTTCTTCTTCTTCT CTCGTTTCGCATTTCGGATCCTGATCGCGGTGAGTATCTATCTCCTTCTCACTTCAGCGATTGAAGATTGATAATTAGCT TTCACAAATTCAATTTAATTTGATTTTTGATGATGATGATGATGATGATGATGATGATTCATGTAACTGTTGTTTTCAAT TTGAGGAAGAAGTACGCGATCATCGGAATAGTCACTTTTTTCTGCTTTTTTGTTGTTGTTGTTGGATACTGCTTTATTCT TTTACTGTTGTAGATTCAAGAGGTGTGACTTTTCATGGTTTCACTTTAGATTATTCTGATTATTTATAGATCTGTTTTGT GGTTTTGTTCAATTAGCTTAAGGTTGAAGTAATGGATATAAAGATTGTTTTGAGCTAGTTATTTCTTTGTTATTACTTTC ATTCTGTTGTGTTGTGATTTATTGTTGTTGTTGTTATATATATATATATATATATATATATATATTTACACTTTATCAGT GTTTTTTTGCTCAAGCATGCTATACTAGAGTTCTCTGTAATGGTGTATCCTTGTATCATATGTGTAATTGTTCTTCTTCT ATGTAGATTTGACTGTTTTTATCATTTAGAAGTTTATTTGTAAGCAGAATTTGGTTCAGGGCATGTTTGATTGAACAATT TTATTTTTTTTTAAAATGGGTTTTTTATGTCAAAATTTTATATAATAACTTCTATAAATTTGTAAATTTCTAACTAGAGT GAAAGGGTAGCTAAGAGTTTTTTCAGTGATTTTTTATGAATTAAAAATAGTAACTTTATTTTCAGTGATTTTTTTTAATG GTCTGGACTAACTGGCCATATTTTTTATTTATGATTGTTGTGGTCCAGTTAACTGAATTCAGCACGTGAGGCGAGCTAGA GAAATCAAAATCTCCTTCAACTTCTTCTTTCAGCTGGACAAGTGTCGACTAATATGAAAACGCTAACTGTGAATACTGAA GATTCTTTTTCCAGTTTACTGGAACTTGCTTCTAACAATGATTTTGAAGGTTTTAAGGAGCTCTTATACAAGGATGCTTC GTCGATTAATGAGGTCGGGCTCTGGTATGTCCGGCAAAATGGGTCGAAACAAATTGTTCTTGAGCACAGGACTCCTTTGA TGGTTGCTGCTACCTATGGTAGCATTGATGTTCTGAAGGTTATACTTTCGTGTCCAGAAGCAGATGTGAATTTTGCCTGT GGGGTGAATAAAAGCACTGCTCTTCACTGTGCTGCCTCCGGTGGGTCTGTTAAGGCAGTTGATGCGGTGAAGCTTCTTTT ATCAGCCGGTGCTGATGTCAACTGCGTGGATGCGAATGGAAATCGAGCTGTTGATGTTATTGTTGTCCCTCCTAAGTTGC AGGGCATGAAAGCAATTCTTGAGGAACTCCTCTCGGACAGTGCTTCTGATGGCTCTGTTGGTGGCATCTCTGTTCCGGTG TCTGTGAATTCTTCTAGTCCTGGTTCACCTGTGCATTTCTTGTCACTTGAAAATGGGATGCCATGCTCTCCTTTGGGCTC ACCGCGTTCTCCCGGGGCTGCAAAGTTAAATGATGCAGGTATCAGCACATTCTCGGAGAAGAAAGAATATCCAATTGATC CATCACTTCCTGATATAAAAAATAGCATATACACTACGGATGAGTTTCGGATGTTCTCATTCAAGGTTCGTCCTTGTTCA CGAGCATACTCCCATGATTGGACTGAGTGTCCATTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGATCCCAGAAAATT CCACTACAGCTGTGTTCCATGCCCTGATTTTAGGAAAGGGGCTTGTAGACGTGGAGATATGTGTGAATATGCTCATGGAG TATTTGAGTGCTGGCTACACCCAGCTCAGTATCGGACACGCCTCTGTAAAGATGGCACTAGTTGCAACAGAAGGGTGTGT TTTTTTGCTCACACTGCAGAGGAGTTGCGTCCGCTGTATGTGTCCACTGGATCTGCTGTTCCTTCGCCACGATCATCTGC CTCTGCTGCTAGTGTCATGGACATGGCTGCCGCAATGAGCCTTTTGCCAGGTTCACCTTCGTCAATCTCTTCCATGTCTC CATCCCACTTCGGCCAGCCCATGTCCCCATCCGCAAGTGGCATCTCACTCTCATCTCCTTCTTGGGCACAACCTAATGTG CCGGCCCTTCATTTGCCCGGAAGCAATTTTCAATCTAGTCGCTTGAGGTCTTCTCTTAGTGCTCGTGACATTCCACCTGA AGACTTGAATATGTTGCCTGATTTTGATGGCCAGCAGCATGTTATGAATGATTTGAGCTGTTTCTTACAGCCCCGTTCTG GTGCTGTTTCTGCGAGTCGATCTTGTCGGTCTAAGATACTAACTCCATCAAATTTGGAAGATCTCTTTTCTGCTGAATTT TCTTCATCTCCCCGATATTCTGACCCAGCAATGGCTTCTGTTTTTTCCCCAACACACAGATCTGCTGTTATGAATCAGTT TCAACAGCTTCAAAGTACGCTGTCGCCTATAAATACCAACATGATGTCTCCTAAGAATGTTGAGCATCCTCTGTTACAGG CCTCATTTGGCGTTGCTTCTCCTGGGAGAATGTCACCTAGAAGTGTTGAACCGATCTCCCCAATGGGCGCTCGACTGTCG GCATTTCCTCAGCGTGAGAAACAACAGCAGCAACAGCTGCGGAGTATTAGTTCAAGAGAGCTTGGTGCCAACAACCCTGC CTCAGTTGTTGGCTCCCCTGCAAGCCCTTGGTCTAAGTGGGGATCTCCAAATGGGAAGGTTGATTGGTCTGTAAATGGAG ATGACCTCGGTCATCAAATGCAAAGATCATCCTCATTTGAACTGAAAAATAATGGGGAAGAGCCTGATCTATCATGGGTC CAATCCCTGGTGAAGGAATCCCCACCTGAGATGATGATGAAAGAGAAGTTTGCATCCTCTGGCCCTGTTGCATCTGCTGA AGGACTGGATCCCAATTCCCAAATTGAATCCGTTGATCATTCTGTGTTAGGAGCTTGGCTTGAGCAAATGCAGCTGGATC ACCTTGTAGTCTAATCAAATTTGACCCTTTACATCTTATTGAGATAGGTATTTAATATCTTAAGGTACATATTCTTTTGG TGATTTTTTTGGGAACAAATCAGGGAAGAAAAGTTGTAATGGAAGGGCTGCAAGGTTGCCGAAGGATATTATATATTTTT TCATTAAAAATAATTCTCATTCATTATTTTACTAAGAGCTTCAGGAGTGGTGAACAAGCCCCTTTTTGAGCTGTTGTGAT GTTCAATAGGAGAGAAAATCCTGTCGAGGTTTTGTATTTTTCTTCAAAAATGCCCCGTTTCAGGATTATGCCTTTTTCCA TTGTACGTTTATTCTGAAGAGAACTAAGCGAAGATGGCTTCGTTTGATTTCAAGTACTTCAAGTAGCTTCCTTTGATTTC AAGTACTTCAAAAATTGCTGTTGCATATTATCTTTATTTGAAAGGAATAATTAGATGATGATCTGTGCTGTTGAATATTT ACCACAGATCGTATGAAATAATTGTACTGCCTTTGATGTATTACATGGAATTGTACTACAATTTCGTTTTTCAAATTCAA ATGCAATGCACTGTTTTCTGGTTGCTATTTTCGTTCACTCTACTCGTACAATGGCCCCCTATCCAACTGCAAAGTGTTTC TTTTGGCTCAGTGGTGGAGGTAAATGTCGTTGTGGTCCTGCTTTTGGGATTCTTGCAATCTTATTGAGGTGATTTTGAAC TGTGAAACTAATGAAAGGGTCGTTTTGTCTTTATTGCTTTGAATGAATGGTTTCAAGATCCGGGGAGGGTGTCATTAATT ACCACTATGTTCCTTGATGGCGTGGCAACCCTGCACAGTAGACTAGTGTCAAAACGTTGGGTAGGAGGTTGGTGGGTTTT TATTGGGGTGATCAGAACTTTTGGTGTGGATAAGATTTTCAGTTGACCTGTGTACCCACCCTGGTGTTGTTAGTTGAGGA TAGAAATTAGATTTCACCAGCATTTGGAAGTTTTGTATTTTGCCAACAGGTCCTTATGATATATCCAGCACTTCTCCACT ACTAGTGCCACCATCACCACCATTTCCAGCCACCCATCCTCCACCATCGGCCACTTACTTATCCTCCACCATCAATTTTT CACAAGTGTATCGTGAGACTTTTTCAAGTGACTCACATTAGACTCCGCAGTGTACTCATGTCATGTACTGTTTTTGAGTT GTGAGAATTCTTCCACAAACCATTTTCTATGAGAATTTGCAAGCATTTTGTGTCCCTTAAAGATATATAATATTTAGTGA AATTATTCTTTTTTTTAAACAAACTGCATGTATTAAGAAGAATAAGGCACAAAGGCCAACATCATAATGAACTAGCGAAA AAATTACATCCGGAGCCTCCTCAATCCAAATCCTAAAATCGGAAGAAAAAGAGGGTAACCGATCAATGTTTACATATCTG TAGCACAAAGTTGGGCTCGAAACAAGCCACACAATCAAAATAAGTATAGCTCACATCTCTAAGTGAAGAGATGCACATAA AACATTATACATCACATTTTTTTCTTCAAAACTTAACACATCACTTTAACTCCAGAATCATCAATTCTGCAAACGTTAAT TCAAACACACTAAATGGAGTAGTCCAAGATTCTCACAACTGGTAAAGTAGTAACATAGAGTCCATATGCCATCTTTAAGC AACAAAACTTTCCGATGAAGAAGATATTCTACAACATTGAGTGGCCTCTGAGATAGCGCCAAGGTCCAGTGCCTGTTCCC ATCCTGCATACAAATTTGTGATTCATGTAATCTGACTTCATAATATAAAATTTAC
CDS sequence (LotjaGi3g1v0060800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAACGCTAACTGTGAATACTGAAGATTCTTTTTCCAGTTTACTGGAACTTGCTTCTAACAATGATTTTGAAGGTTT TAAGGAGCTCTTATACAAGGATGCTTCGTCGATTAATGAGGTCGGGCTCTGGTATGTCCGGCAAAATGGGTCGAAACAAA TTGTTCTTGAGCACAGGACTCCTTTGATGGTTGCTGCTACCTATGGTAGCATTGATGTTCTGAAGGTTATACTTTCGTGT CCAGAAGCAGATGTGAATTTTGCCTGTGGGGTGAATAAAAGCACTGCTCTTCACTGTGCTGCCTCCGGTGGGTCTGTTAA GGCAGTTGATGCGGTGAAGCTTCTTTTATCAGCCGGTGCTGATGTCAACTGCGTGGATGCGAATGGAAATCGAGCTGTTG ATGTTATTGTTGTCCCTCCTAAGTTGCAGGGCATGAAAGCAATTCTTGAGGAACTCCTCTCGGACAGTGCTTCTGATGGC TCTGTTGGTGGCATCTCTGTTCCGGTGTCTGTGAATTCTTCTAGTCCTGGTTCACCTGTGCATTTCTTGTCACTTGAAAA TGGGATGCCATGCTCTCCTTTGGGCTCACCGCGTTCTCCCGGGGCTGCAAAGTTAAATGATGCAGGTATCAGCACATTCT CGGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATAAAAAATAGCATATACACTACGGATGAGTTTCGGATG TTCTCATTCAAGGTTCGTCCTTGTTCACGAGCATACTCCCATGATTGGACTGAGTGTCCATTTGTTCATCCTGGAGAGAA TGCTCGTAGGAGAGATCCCAGAAAATTCCACTACAGCTGTGTTCCATGCCCTGATTTTAGGAAAGGGGCTTGTAGACGTG GAGATATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCAGCTCAGTATCGGACACGCCTCTGTAAAGAT GGCACTAGTTGCAACAGAAGGGTGTGTTTTTTTGCTCACACTGCAGAGGAGTTGCGTCCGCTGTATGTGTCCACTGGATC TGCTGTTCCTTCGCCACGATCATCTGCCTCTGCTGCTAGTGTCATGGACATGGCTGCCGCAATGAGCCTTTTGCCAGGTT CACCTTCGTCAATCTCTTCCATGTCTCCATCCCACTTCGGCCAGCCCATGTCCCCATCCGCAAGTGGCATCTCACTCTCA TCTCCTTCTTGGGCACAACCTAATGTGCCGGCCCTTCATTTGCCCGGAAGCAATTTTCAATCTAGTCGCTTGAGGTCTTC TCTTAGTGCTCGTGACATTCCACCTGAAGACTTGAATATGTTGCCTGATTTTGATGGCCAGCAGCATGTTATGAATGATT TGAGCTGTTTCTTACAGCCCCGTTCTGGTGCTGTTTCTGCGAGTCGATCTTGTCGGTCTAAGATACTAACTCCATCAAAT TTGGAAGATCTCTTTTCTGCTGAATTTTCTTCATCTCCCCGATATTCTGACCCAGCAATGGCTTCTGTTTTTTCCCCAAC ACACAGATCTGCTGTTATGAATCAGTTTCAACAGCTTCAAAGTACGCTGTCGCCTATAAATACCAACATGATGTCTCCTA AGAATGTTGAGCATCCTCTGTTACAGGCCTCATTTGGCGTTGCTTCTCCTGGGAGAATGTCACCTAGAAGTGTTGAACCG ATCTCCCCAATGGGCGCTCGACTGTCGGCATTTCCTCAGCGTGAGAAACAACAGCAGCAACAGCTGCGGAGTATTAGTTC AAGAGAGCTTGGTGCCAACAACCCTGCCTCAGTTGTTGGCTCCCCTGCAAGCCCTTGGTCTAAGTGGGGATCTCCAAATG GGAAGGTTGATTGGTCTGTAAATGGAGATGACCTCGGTCATCAAATGCAAAGATCATCCTCATTTGAACTGAAAAATAAT GGGGAAGAGCCTGATCTATCATGGGTCCAATCCCTGGTGAAGGAATCCCCACCTGAGATGATGATGAAAGAGAAGTTTGC ATCCTCTGGCCCTGTTGCATCTGCTGAAGGACTGGATCCCAATTCCCAAATTGAATCCGTTGATCATTCTGTGTTAGGAG CTTGGCTTGAGCAAATGCAGCTGGATCACCTTGTAGTCTAA
Protein sequence (LotjaGi3g1v0060800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTLTVNTEDSFSSLLELASNNDFEGFKELLYKDASSINEVGLWYVRQNGSKQIVLEHRTPLMVAATYGSIDVLKVILSC PEADVNFACGVNKSTALHCAASGGSVKAVDAVKLLLSAGADVNCVDANGNRAVDVIVVPPKLQGMKAILEELLSDSASDG SVGGISVPVSVNSSSPGSPVHFLSLENGMPCSPLGSPRSPGAAKLNDAGISTFSEKKEYPIDPSLPDIKNSIYTTDEFRM FSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKD GTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAASVMDMAAAMSLLPGSPSSISSMSPSHFGQPMSPSASGISLS SPSWAQPNVPALHLPGSNFQSSRLRSSLSARDIPPEDLNMLPDFDGQQHVMNDLSCFLQPRSGAVSASRSCRSKILTPSN LEDLFSAEFSSSPRYSDPAMASVFSPTHRSAVMNQFQQLQSTLSPINTNMMSPKNVEHPLLQASFGVASPGRMSPRSVEP ISPMGARLSAFPQREKQQQQQLRSISSRELGANNPASVVGSPASPWSKWGSPNGKVDWSVNGDDLGHQMQRSSSFELKNN GEEPDLSWVQSLVKESPPEMMMKEKFASSGPVASAEGLDPNSQIESVDHSVLGAWLEQMQLDHLVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 700 | 700 | 0.0 | – | |
| PANTHER | 1 | 700 | 700 | 0.0 | – | |
| Gene3D | 2 | 179 | 178 | 2.8E-20 | ||
| SMART | 10 | 40 | 31 | 360.0 | ||
| SUPERFAMILY | 10 | 137 | 128 | 2.64E-18 | ||
| Pfam | 19 | 126 | 108 | 4.7E-10 | ||
| SMART | 57 | 87 | 31 | 0.067 | ||
| ProSiteProfiles | 57 | 158 | 102 | 17.131 | ||
| PRINTS | 58 | 73 | 16 | 4.5E-5 | ||
| ProSiteProfiles | 92 | 127 | 36 | 12.289 | ||
| SMART | 92 | 124 | 33 | 3.1E-4 | ||
| PRINTS | 111 | 125 | 15 | 4.5E-5 | ||
| Gene3D | 274 | 344 | 71 | 2.7E-6 | – | |
| SMART | 277 | 303 | 27 | 4.0E-6 | ||
| Pfam | 282 | 302 | 21 | 6.8E-5 | ||
| ProSiteProfiles | 282 | 304 | 23 | 13.582 | ||
| SMART | 312 | 335 | 24 | 35.0 | ||
| MobiDBLite | 379 | 399 | 21 | - | – | |
| MobiDBLite | 572 | 613 | 42 | - | – | |
| MobiDBLite | 572 | 608 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi3g1v0060800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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