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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0061100 |
| Transcript ID | LotjaGi3g1v0061100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing family protein; TAIR: AT3G61600.1 POZ/BTB containin G-protein 1; Swiss-Prot: sp|Q9FPW6|POB1_ARATH BTB/POZ domain-containing protein POB1; TrEMBL-Plants: tr|A0A067H3D5|A0A067H3D5_CITSI Uncharacterized protein; Found in the gene: LotjaGi3g1v0061100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6470253..6472627) extracted from Lotus japonicus Gifu genome v1.2.
TATAGATTGGTGTAATGGTATGTCAAAACACGTTTTAACACACTCTCTCTCAGATAACCTCTTTCCCTCCGATTGTTCCA ATTCCCAAATTGTTTTTGTTAGGGTTTGCTCTTGTAGGCAAGGAGGGTGAGACGAAGCGTTCAAAATTGGAGTGATGGAC TCTTCTTATTGTGAATCCAATTTTAGCTTCGCTTTCAATGATATGCATTACTCCAACAGGCTTCTCCGAATTGAGATCAT TACCGACCCCGTTTATTCCGATAACTGTACTCGCCACCACCGTAAGAGGAAACGCCAAAACGGTAATTTCCGTCATATAA TGTAGTTTTGTAAGTACAACTTAGTAAATGATTCGTGTTTTCAGAAATTTATTGCAGTATAAGTGATTCTGATGGATTCT AAGTGATTCTGTGCTTGTAGTATAAGTCATTCTCAATGTGTGTTCTCTTACTTGCAGATAATGATGATGAGACTTGTGTA ATCCCTTCTGGTATACTTAATTCTTTATAATGTACCTATTTCAATTTTATAAGACCATGTTCATTCTGCATGATGATTCA CACTTTTAATATAGATGATGAAGCTGCAAGCAGCCGTGCTTCAAACTGGATGGTGGATTGCCCTGCAACTACTGTTGTTC GAGTTAAAACACTGCATATCAGTTCTCCTATACTGGCTGCTCAAAGCCCTTTCTTTTTTAAGGTAGACAGAGACCTCTTT TTTATAGACTAATAATATGTATAGTTTTTCCTAGCACTCGTTTTTATTTATATTTTAATTTTTTTACAGCTTTTCTCTAA TGGGATGAGCGAAACAAAGCAGGGACATGTCTCTCTCAGGATTTATGCATCTGGTAACTTTTAGATCGTTTTAATTTTTC CTCAAATAGTCGACTAAATGTCATATTCTTTTTCATTACAGAAGAAGCTGGTCTCATGGAGCTACTCAAATTTATGTACA GGAATACTTTGAATATCACGGCAGCACCTGCTTTGCTGGATGTACTTATGGTTGCTGATAAATTTGATGTGCCTTCATGC ATGAGATACTTGCTAAATTTGCCCATGACACCTGACTCTGCATCACTCTACCTGGAACTTCCTCATACTGTTAATGCAAT CCAACCACTGATTGATGCGGCAAAGCAGTATCTGGTTGGCAGATACAGGGAAATAACTGATGACAAGTAAGTCTTTGCAT TTATTTAATTAATTTCAGTTGCATTATCTCAAAAGAAAAAACTTAGAAGAAGAGCCTTATTTCTCTTTGCTGACTTTATT GATTCTAATTGTTCATTTAGTTGAAAAAGATCTATTTCTTTCTTTTTAAATGCTAATAATATAATATTGTATGTGACCAG GTACAAGGAAGAGCATATGGCCTTGTCTCTTTCTGGAATAGAGGCAATATTGGCTAGTGATGGTCTCCAAGTTTCATCAG AAGATGGTGTATACGACTTTGCATTAAACTGGGCTAGACAAAAGTACTGCCGTTTGAAAGAAAGGCGAGAAGTTCTGGGT ACACGACTTGCGGGTTTAATTCGCTTCCCTTATATGACATGTCAAAAGCTTGAGGACGTCTTAACCTGTAATGACTTTGA ACATGAGAGTGCATCTAAGCTTGTACTTGAAGCCCTATCTTTGAAAGCGGAGGCTCCACATTGCCAACGGCCATTGGCAA CAGAAGAGTCTATTTCCTTGAACCGGCGTTTTAGGGCGAGGGCATATAAGCAGGTTTTCTACATGCATTTGGAGTGGGAG GATTGTGTCAGTCTGTTCCCATCTGGCCATGTGTATTCTGAGGCATTCGATTTTGGTGGACAGATGTTTTTTCTATCAGC ACACTGCAACATGGACAACAATGGCTCTCATTGCTTTGCGCTGTCTTTGGGACTGAAGGAAAATTGCTCAGGAAGCATTG ATGTGGACTATGAATTTGGTGCAAGGTTGAAGCCAACAAAGAAATTTACTAGCCTGTACAAATCCAATTGCACATTTTAC GGAGGGACCCTTATTGGCTGTAAAAACCTCTTTAATGTTCCCTGGACATCGTTCATTGCGGAGAACGGTGTTTTCTTCTT TAAGGGTCGTCTCCACCTAGCAACCAAGCTCACTATCACACATTGACCCCTTATTTCTTTATTTCCATTTATGAACTATT TATTCTAGCATAGCCTTGACTTTTAGCACATTGATTAGCTGCTGATTTTGATTTCTCATTTTTTGTTATACTGCTGGTGT TAGAAGTTTAACATAGCAGCTGTAACATCTGAACATTTTTGAAGTTATAATCGTTGGGTTTTACTATAACAATCAAGTCA AATTTAACATAACAGCTGTAATATAATAGTTCGGGGAAGAAAGATTCACTTTTTC
CDS sequence (LotjaGi3g1v0061100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCTTCTTATTGTGAATCCAATTTTAGCTTCGCTTTCAATGATATGCATTACTCCAACAGGCTTCTCCGAATTGA GATCATTACCGACCCCGTTTATTCCGATAACTGTACTCGCCACCACCGTAAGAGGAAACGCCAAAACGATAATGATGATG AGACTTGTGTAATCCCTTCTGATGATGAAGCTGCAAGCAGCCGTGCTTCAAACTGGATGGTGGATTGCCCTGCAACTACT GTTGTTCGAGTTAAAACACTGCATATCAGTTCTCCTATACTGGCTGCTCAAAGCCCTTTCTTTTTTAAGCTTTTCTCTAA TGGGATGAGCGAAACAAAGCAGGGACATGTCTCTCTCAGGATTTATGCATCTGAAGAAGCTGGTCTCATGGAGCTACTCA AATTTATGTACAGGAATACTTTGAATATCACGGCAGCACCTGCTTTGCTGGATGTACTTATGGTTGCTGATAAATTTGAT GTGCCTTCATGCATGAGATACTTGCTAAATTTGCCCATGACACCTGACTCTGCATCACTCTACCTGGAACTTCCTCATAC TGTTAATGCAATCCAACCACTGATTGATGCGGCAAAGCAGTATCTGGTTGGCAGATACAGGGAAATAACTGATGACAAGT ACAAGGAAGAGCATATGGCCTTGTCTCTTTCTGGAATAGAGGCAATATTGGCTAGTGATGGTCTCCAAGTTTCATCAGAA GATGGTGTATACGACTTTGCATTAAACTGGGCTAGACAAAAGTACTGCCGTTTGAAAGAAAGGCGAGAAGTTCTGGGTAC ACGACTTGCGGGTTTAATTCGCTTCCCTTATATGACATGTCAAAAGCTTGAGGACGTCTTAACCTGTAATGACTTTGAAC ATGAGAGTGCATCTAAGCTTGTACTTGAAGCCCTATCTTTGAAAGCGGAGGCTCCACATTGCCAACGGCCATTGGCAACA GAAGAGTCTATTTCCTTGAACCGGCGTTTTAGGGCGAGGGCATATAAGCAGGTTTTCTACATGCATTTGGAGTGGGAGGA TTGTGTCAGTCTGTTCCCATCTGGCCATGTGTATTCTGAGGCATTCGATTTTGGTGGACAGATGTTTTTTCTATCAGCAC ACTGCAACATGGACAACAATGGCTCTCATTGCTTTGCGCTGTCTTTGGGACTGAAGGAAAATTGCTCAGGAAGCATTGAT GTGGACTATGAATTTGGTGCAAGGTTGAAGCCAACAAAGAAATTTACTAGCCTGTACAAATCCAATTGCACATTTTACGG AGGGACCCTTATTGGCTGTAAAAACCTCTTTAATGTTCCCTGGACATCGTTCATTGCGGAGAACGGTGTTTTCTTCTTTA AGGGTCGTCTCCACCTAGCAACCAAGCTCACTATCACACATTGA
Protein sequence (LotjaGi3g1v0061100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSSYCESNFSFAFNDMHYSNRLLRIEIITDPVYSDNCTRHHRKRKRQNDNDDETCVIPSDDEAASSRASNWMVDCPATT VVRVKTLHISSPILAAQSPFFFKLFSNGMSETKQGHVSLRIYASEEAGLMELLKFMYRNTLNITAAPALLDVLMVADKFD VPSCMRYLLNLPMTPDSASLYLELPHTVNAIQPLIDAAKQYLVGRYREITDDKYKEEHMALSLSGIEAILASDGLQVSSE DGVYDFALNWARQKYCRLKERREVLGTRLAGLIRFPYMTCQKLEDVLTCNDFEHESASKLVLEALSLKAEAPHCQRPLAT EESISLNRRFRARAYKQVFYMHLEWEDCVSLFPSGHVYSEAFDFGGQMFFLSAHCNMDNNGSHCFALSLGLKENCSGSID VDYEFGARLKPTKKFTSLYKSNCTFYGGTLIGCKNLFNVPWTSFIAENGVFFFKGRLHLATKLTITH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 466 | 461 | 5.0E-174 | – | |
| Gene3D | 61 | 202 | 142 | 3.1E-14 | – | |
| ProSiteProfiles | 76 | 145 | 70 | 12.619 | ||
| SMART | 76 | 172 | 97 | 2.8E-6 | ||
| Pfam | 78 | 165 | 88 | 2.1E-10 | ||
| CDD | 79 | 159 | 81 | 3.6111E-12 | – | |
| SUPERFAMILY | 82 | 167 | 86 | 4.63E-10 | ||
| CDD | 192 | 285 | 94 | 1.47305E-10 | – | |
| Pfam | 193 | 286 | 94 | 3.4E-7 | ||
| Gene3D | 203 | 309 | 107 | 1.2E-8 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0061100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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