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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0065800 |
| Transcript ID | LotjaGi3g1v0065800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier family protein; TAIR: AT1G76520.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C9K5|PILS3_ARATH Protein PIN-LIKES 3; TrEMBL-Plants: tr|A0A072TKW2|A0A072TKW2_MEDTR Auxin efflux carrier family protein; Found in the gene: LotjaGi3g1v0065800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6976376..6981155) extracted from Lotus japonicus Gifu genome v1.2.
TCATAATGATCCCAACTTGTTTTTTAACTTTAAAAGAGAAAGATCAAAATCCTTTTCATCATATGGTTTATATACATTTT GATGCTTATTTGGAAGTTGTCTCATATCAGGATTACAAAGTGGTGTACAAGAGCTTATTTCTAACTTTATGATAGAAACT GGAAAAAGGAAAATAGATACAATATGCACTTCTGGAACCTTGCTCTAGTTGCATTTCAACCAGTTCTTAAAATTTTCATC ATTGGTGCTGTTGGAGGGTTCCTTGCAATTGATCGCTTTGACATACTTGGAGATAATGCCAAGAAGCACCTCAATTCTGT AAGTTTCATTTGCTACAGTTTAGTTAGCTTTTTTTCGGTTTAAACCACAGATACCCTCCACTGAGGCAATCTTGTTCGAA CCGACCTCTATGGGTGGTCAAGGTCTCTCAACCAAGTATTTAGTTAGCTTTATAATAAGAATAAGACATCAAAATTAACT AATAATACAAGTACTTTTTTTACAGATGGTATATTTTGTCTTTACTCCAGCTCTTATTTGTAGCAGCCTGGCTCAAACTA TAACTTTTAGGAGCATGGTTATGCTGTAAGTTTGTACTTAATTAATTACTGCTAGCTATATTTTGATTCCATGTTTTGTT GTGAAATTTGTTTCATTTCTTCATTTGATTGGTTTTGATTTCATCACTTAGAAGAGATTCTTGATTTGATGAAATGTGCA GGTGGTTCATGCCGCTAAATGCTCTTCTAACATATGTTATTGGGATAGCTCTTGGATGGTTACTTATTAGAACAACTAGA GTACCTTATCATCTTCAAGGCCTTGTATTAGGGTGTTGTTCTGCAGGCAAGTCTATTTACATTTTTTCAGAGAATCTTAA TTCTTATCAATCTCATCGATCTTGTTTGGAAGAGCGTATTTGAATTTTTTTCTTAAATCTAACAAAATATTATTTACATT TCAAGGTGATTCAGTTGTTGGCAATAATGGAATTGCAAACTATGAAATAACATTTTTTACATGAAACTAAACTTCAAAAC TAATAATCATCAGTTTTCACAGCAAAACAGCAGAATAAAATGAAGGTTGATGAAACATTGAAACTGATTCATCACCAGAA ACTTAAAACATTAAAAAAATGCTTATGTAAGTGTTGTGGTGAACTTATGAAAATAATTTATGACCTACTTATAAGTTGTT TTGAACTTATTTTCATAAGTTACTTAAATTAGCTTATAGATAAGCACTTGTACACCTACCTATAAGTCATTTTAGGCTTT TTATGATAAGCTTCCTAAGTTTAATTATGAATAAGTGCTTATGTCATAATAGATTATCGTCATAAGCGCTTAATTAAGAT GTTTACCCAAATTCACTCGATATAGATTTGAAAAAGAGAAATGTCTATGAACATGACAAGTTTGGCGTTTGATGTCTGCA GGAAATTTGGGCACTTTGCCTCTTATCATAGTCCAAGCTATCTGTAAAGAAAGAGAAAACCCTTTTGGAGATGAGGATGA TTGCATCCGTCATGGACTAGAATATACTTCTATAACAATGGCAGTATGGCACTAAAGAGATTTGAAGTTTAAGTATTTGC ATTAGTTACACAGTGGATTTGAAATATTTTGAATTACTTTCTCACTGTGTTTCTGGTTTTGCAGCTAGGACACATTTATG CTTGGTCTATTGTGTACAACATTGTCCGCATATATTCACCTAAGCCTAATGTTGTCAAAGTTGATGAATCCGCAGTAAAT AAAGGAACTGATCCAGAGAACCTTTCAAAATGTTGTGCAGTGATCACAGCTGAGGACAAATCACAGCTTAATGATTACAT TGGTCAACTTAAAATTGAACTTAAAGAGGCTAATGGAGAAGCAAAGGTTGGTGTAATATGATATTACTATATGTAAAAGT TTCTATGTTGTGGATATTTTTTCTCCTTGGAATCTTTGGCCAATTAGTCTTGCATATATTGATTGGAATGCATTAAAACC TTTCTATTATGAGTTTATGACATTAACATCCACCTCCAGCTTCTTATATCAGCAAAAGATGTAAGTTACAGCTAACTATC CTAAAATATTAAACTTACTTATAACATGCCTCTCACACAAGAGCCCATTGGGCTTATAGTGGGGAAAATGCACAGGTTAA TTGCCAAGTGCTGAAATTCAACTTTTTTATTAGAGTAATGGGGAAACAATGATCGAACTCTAGACCTTAGTTATAGAACC ACTGATATCAATGACGAGTTACCCCAAAACCTTAAATTGTTGGGTGAAGACACAGACACATGAATGATTCTATATTATAC TTCTAACATTTTTATTTTATTTTGAACAATCAAAGCTTCATTAATATTCATCAAAGAAACAGGTCGCAAAAGTGATGAAC AGACCCAGGACATCTAAACTGAAACAAGAGTCCAAATGTCAACCTCTCTATTACATCTTTTCTTTGTAAGATAGTCGGCT ATAATAATTTTCTCTCTGTTGACATGAACTATCTAGCTACAATTGACCTCACCTCTAATTTACTGAATTCTTATATTATT TATCTCAGAGTTGAGTTGTATGAAATGCACAAGAATGATCAGTGCTTAAGCAATACCTACCTGCAAAATGCATGTTGTCT AGTAGGAGAAAAGTGAAAAGGATAATATGATTGCAATGCAACATGGCATACCTTCATATACTGTGGATTTGATAGAAGCA AAGCCTTACATTTTCAAGTGTTTCATAGGTACCAGAAAAGCCAAACATTATGAAACAGGTGAAAACATTAGCTGACAAGA TCAACCTGAAGGTCCTATTTGCACCTTCATCATTGGGAGCGGTATGTCCATAGTTCTGTTTTTCTCACTAATCTTTTAAT TATTTTCAATCAAGTCATACATTTGAAGCAAATGGTATACAATGAAGTATTGAATAAGGAATACTAGTTAGTTACAAATT AAAATACAAAACCATAATACCTGAAGTCTAATTCTTTTAGTCCTTAAGCAGGCATTGCTCTATATTGATACTTTACTGAA CATTCCTAACAATGATACTTTCTTTTTCCTTCTGTCTGCAGATTGCTGGTTTGTTAATTGGTGCAGTTCCTCAATTTCAA AAACTACTAGTAGGTCATAGTGCTCCTCTCGGTGTGATTCAAGATTCTGTAACTATGCTAGGGTGAGCACCCTTTACTAC CCTTTTTTCATGTATTAAATTGCTCTCGCAATTCCAACCCGAGTATGATGAAAGCCAAAAGTCTCCCCAATAGTGCGGTT CCTAAGAATCGATCTTTCTGCTTGGGGACTTTGTTAATAGATTTGTCTCTTAATTTTATTCTACTCTTTCCTTTACCTTT CTCCTGGTTTTCAGGGATGCAAGCCTTCCAGCAATGATCTTAGTGGTTGGGGCACATCTTCTTAAGGGTAACTTATTGTT AATAACATGAAGTTGTTAATAGCAGTTGCATTTGAAAATGAATGTGAGGTAAGAAATTGAATGTTTTTCAGGTTTAGAAG GATTTGGAAGGCAACTTCCACTTGTTGCTGGCATTATTGTGGTTAAATTGCTAGCCATACCAGCAATAGGTGTAGCAATT GTCAAAGGTGCAGTTCATTTCAGATTGATCCACCCTGATCCATTGTATCAGTTTGTTTTGCTGCTTCACTTTGCCCTTCC ACCTGCAGTATCCGTGAGTAAGTTGTTTATGATACTTAAAACATTATAATTAGTTGTTTCCTAAATACTTACGAAATTAA TTCACTGTAGAAAAAAAAATAGTGTTCAGCACTAGTAACATCTTCAAAAGGAACTGAAATAGGAAGGCAAGGGCCACTAC ACACCGCTACGGCGCTATAGCCCGCTATTGACAACCCTACATTTAAATTATGACACACATTTATTCTGAATAATGGCACT GTTTTTACAAATGTTCATCATCCACAGACTGCTAGAAACTGTGTTACCTAAACTTGTTTGCATTTGCACTATGTTGCTTC TGTCCATTATCTCCAAATATGACAGATCAATTTCTGGTACTACCAAAATCTGAACCATTTTCTTTTCAGACTTTAGTTGT AAAACTAAAAATATTTAATATGACTGTGCCAGGTACAATGACTCAGTTGATAGGAGTTGGTCAGAGTGAATGCTCAGTTA TCATGTTAGCAACTTATTCCTCTTCTACAGTTTTGCTTACTCTCTGGTGCACAATCTTTATGTGGCTTGTGCAATAATTA TTTTGGGACTATAGGCTGAAGGTGTAAAAACATTTGCACAAATAAGATGTGTGCAAAGCATTATGTTGTGCCTTCATCTT ATAATTTGTAACTAAAGCAATGGGGAAAAGGTATAAAACAGAAAGGGGAAAAAAAGAGATCCTGCTCACACTAATTATTT TTTTCTTATAATATCATGTAATATATAGCTGCAACCGTTGGCAAAGCATGAACCAGAAATATGGAGGAACCAAAATAAGT GTCCAACACTAAGTTGAATGTATAATATGGCATCTTATATCTAAAACTTTAAAAGCAGTCTTTATATAAAGTACACCTTG AAATTAATTTTATTGGTTTTAATATAAACCTATACATTCTTTATTTAAATCCCCTTTCCTTTAATTTCCCTCATTCACTT TCCTGTTTTTGTTGTTCATATCAGAAGTAACATGTATGCAATACATAAATATCAGGTTGCTTAAATAAGGCCTATAAACA CTAACCCCTTAGCTTTAAATACTCTTTCTTGATCCAACCAACATAGAGAAACTAAAAGTA
CDS sequence (LotjaGi3g1v0065800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACTTCTGGAACCTTGCTCTAGTTGCATTTCAACCAGTTCTTAAAATTTTCATCATTGGTGCTGTTGGAGGGTTCCT TGCAATTGATCGCTTTGACATACTTGGAGATAATGCCAAGAAGCACCTCAATTCTATGGTATATTTTGTCTTTACTCCAG CTCTTATTTGTAGCAGCCTGGCTCAAACTATAACTTTTAGGAGCATGGTTATGCTGTGGTTCATGCCGCTAAATGCTCTT CTAACATATGTTATTGGGATAGCTCTTGGATGGTTACTTATTAGAACAACTAGAGTACCTTATCATCTTCAAGGCCTTGT ATTAGGGTGTTGTTCTGCAGGAAATTTGGGCACTTTGCCTCTTATCATAGTCCAAGCTATCTGTAAAGAAAGAGAAAACC CTTTTGGAGATGAGGATGATTGCATCCGTCATGGACTAGAATATACTTCTATAACAATGGCACTAGGACACATTTATGCT TGGTCTATTGTGTACAACATTGTCCGCATATATTCACCTAAGCCTAATGTTGTCAAAGTTGATGAATCCGCAGTAAATAA AGGAACTGATCCAGAGAACCTTTCAAAATGTTGTGCAGTGATCACAGCTGAGGACAAATCACAGCTTAATGATTACATTG GTCAACTTAAAATTGAACTTAAAGAGGCTAATGGAGAAGCAAAGGTACCAGAAAAGCCAAACATTATGAAACAGGTGAAA ACATTAGCTGACAAGATCAACCTGAAGGTCCTATTTGCACCTTCATCATTGGGAGCGATTGCTGGTTTGTTAATTGGTGC AGTTCCTCAATTTCAAAAACTACTAGTAGGTCATAGTGCTCCTCTCGGTGTGATTCAAGATTCTGTAACTATGCTAGGGG ATGCAAGCCTTCCAGCAATGATCTTAGTGGTTGGGGCACATCTTCTTAAGGGTTTAGAAGGATTTGGAAGGCAACTTCCA CTTGTTGCTGGCATTATTGTGGTTAAATTGCTAGCCATACCAGCAATAGGTGTAGCAATTGTCAAAGGTGCAGTTCATTT CAGATTGATCCACCCTGATCCATTGTATCAGTTTGTTTTGCTGCTTCACTTTGCCCTTCCACCTGCAGTATCCGTGAGTA CAATGACTCAGTTGATAGGAGTTGGTCAGAGTGAATGCTCAGTTATCATGTTAGCAACTTATTCCTCTTCTACAGTTTTG CTTACTCTCTGGTGCACAATCTTTATGTGGCTTGTGCAATAA
Protein sequence (LotjaGi3g1v0065800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHFWNLALVAFQPVLKIFIIGAVGGFLAIDRFDILGDNAKKHLNSMVYFVFTPALICSSLAQTITFRSMVMLWFMPLNAL LTYVIGIALGWLLIRTTRVPYHLQGLVLGCCSAGNLGTLPLIIVQAICKERENPFGDEDDCIRHGLEYTSITMALGHIYA WSIVYNIVRIYSPKPNVVKVDESAVNKGTDPENLSKCCAVITAEDKSQLNDYIGQLKIELKEANGEAKVPEKPNIMKQVK TLADKINLKVLFAPSSLGAIAGLLIGAVPQFQKLLVGHSAPLGVIQDSVTMLGDASLPAMILVVGAHLLKGLEGFGRQLP LVAGIIVVKLLAIPAIGVAIVKGAVHFRLIHPDPLYQFVLLLHFALPPAVSVSTMTQLIGVGQSECSVIMLATYSSSTVL LTLWCTIFMWLVQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 27 | 22 | - | – | |
| Pfam | 10 | 404 | 395 | 2.2E-56 | ||
| PANTHER | 15 | 412 | 398 | 1.7E-155 | – | |
| PANTHER | 15 | 412 | 398 | 1.7E-155 | – | |
| Phobius | 28 | 46 | 19 | - | – | |
| TMHMM | 47 | 66 | 20 | - | – | |
| Phobius | 47 | 66 | 20 | - | – | |
| Phobius | 67 | 71 | 5 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 72 | 94 | 23 | - | – | |
| Phobius | 95 | 105 | 11 | - | – | |
| Phobius | 106 | 128 | 23 | - | – | |
| TMHMM | 106 | 128 | 23 | - | – | |
| Phobius | 129 | 147 | 19 | - | – | |
| Phobius | 148 | 168 | 21 | - | – | |
| TMHMM | 148 | 170 | 23 | - | – | |
| Phobius | 169 | 245 | 77 | - | – | |
| Coils | 206 | 226 | 21 | - | – | |
| Phobius | 246 | 268 | 23 | - | – | |
| TMHMM | 246 | 268 | 23 | - | – | |
| Phobius | 269 | 287 | 19 | - | – | |
| Phobius | 288 | 309 | 22 | - | – | |
| Phobius | 310 | 320 | 11 | - | – | |
| TMHMM | 319 | 341 | 23 | - | – | |
| Phobius | 321 | 343 | 23 | - | – | |
| Phobius | 344 | 354 | 11 | - | – | |
| Phobius | 355 | 376 | 22 | - | – | |
| TMHMM | 358 | 380 | 23 | - | – | |
| Phobius | 377 | 387 | 11 | - | – | |
| Phobius | 388 | 412 | 25 | - | – | |
| TMHMM | 390 | 412 | 23 | - | – | |
| Phobius | 413 | 413 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0065800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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