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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0068800 |
| Transcript ID | LotjaGi3g1v0068800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongator complex protein 4; TAIR: AT3G11220.1 Paxneb protein-like protein; Swiss-Prot: sp|Q9C778|ELP4_ARATH Elongator complex protein 4; TrEMBL-Plants: tr|A0A072TKF7|A0A072TKF7_MEDTR Elongator complex protein; Found in the gene: LotjaGi3g1v0068800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:7522283..7529023) extracted from Lotus japonicus Gifu genome v1.2.
CTACACTTTAAACTTTCTTCACACTTGACTGCAGTCACGACCTTTCTCTCTTCTCTCATTCAGAAAAAAAGAAAGGGGAG AAATGAGAATGAAACGGAAGTTGGAACCCTAACTCCACTACTCCAGTCCAGTCGATTCCTGATTCCTCAATTGATCAATT GGAACTCAATCTTCAGGTCTCTTTCTCTCTGATTTCTTTGTTCTGTGACTGTGAATGAAATCCGATTGTGAGGGCGTGGG TGAGAGCCTGAGGCGGTGGGCGGTGGGTGAGGCCGTGAGCCGGCTGAGAGGTGAGGGAGGGAGGGAGGCGCTGGTTGAGT AGTAATTTACTGTTGATGATTTATACTGTTAAGTAATGGTTGATTTATATTGATAACCTTTCACACAATTGACAAGATTC TGATAATTTATATAGTGTTTGTTAAGCCACTATGTTATATTATGTATGAGTCACTGGTACAAGTTTTGAGTAGTAGTACT AGGCAATTTTTGTTGACGTGAACTCTTTGGTTATGCTTCCTCAGGGGTCAATAGTGGCCATATTTTGAAGTCTTGAGTTG ATGCAGAATGGCTGCAACCAGGAGTCGAGTTAGTAGCTTTTCTCGGAATGTGTCAACTGCAACATCTCAGAATCCGGGGC TCAAGCATGGCCCTAACGGGACCACGTTCATCTCATCCGGGATTCCGGATCTTGACAGTAATCATCTCTTTGACTTCCTT TAAATTAGTGTGTCTAGTGTCCTTTAAATGGATGAATTAAGGCCCTGTTTGGAAGAGCTTATTTGAGCTTATCTGATAGC ATAAGCGCTTAAGTCAGTGTTTGGGAGAGCTTATGCAAACAGCTTATGGCCTACCATAAGCTGTTTTGAGCTTATTTTCA TAAGTTATTCAGGATATCTCATGAAAAAGAGCTTATGCTTATCTGTAGCTTATTTTCAATTTATTTGAATAAACTTTTTT AAATAGTTTATGACCATAAGCGCTTAATTAAGTTGTTTTCCCAAACGGGGCCTAAATAATTCTGTTTGATTCGTGTCTAG TGTCTTTTCATGGAAGATTCTTATGGGTTGTTTTTTTTTTAAATAGAGATTTTAGGTGGTGGTTTTTCCCTCGGTAGCCT TGTCATGATTATGGAAGATGCTGAGGCACCGCATCATATGCTTCTATTGAGAAATTTTATGTCTCAAGGACTTGTACACA GACAGCCACTCTTGTATGCTAGTGCATCTAGAGACCCTAAAGGATTTCTCGGCACTTTGCCTAGTCCAGGGTCATCCAAA GAGGATAAATCTCGGGATCTTGGCCATGTAAGTTTTTTACTGCTACACTGTGATGTATATCAATTACTTTTAATTTTGTT GTGGTAATGTAATTTTTTTTTATCATGCTTTTGATTTCAGGAAAAGGATCTGAGAATTGCTTGGCAGTACAAGAAGTACT TTGGTGAGCCTCAGCTAAATGTCAACTCTAATAATGGTAAGCCTGTCCATAATCATCTCCTTGTTCTTAGTCTTATAATA GTCATTTCATTGTTATTACTTCATATATGGTATTATTTTTCTTGTCTCGACTATGAAATACATGCCTATCTTGTAGTTAT TTTAACTAGGTCTTGAGAAGCAACCTTTCACTCAAAGGAAATTGAGTGTCTAGAAAAAGAGGCATTATATTGTTATACCA TGTATGACATCATTTCAAAATTCAAATTAATACACTTATGAGTATAACTATGTAAGTATTCCAAGTTTTGACTCAATTTA AGTTTTAACTTCTAAGATTTGAAGTTTTATATCCCAAACTTTGTATAGATATCATATCCCATGAAGTTTACAATAGCAAG ATAAAAATATCAACAGGAAAACCAAAGCTAGTAACACTAGTTTCCTATTCTGTCATTGTCCTTCACCCCCAGTTTGCTGT AATTGTAGCCTCTCTATCATGCCTAATTTAATTCTAGAAGAGTGTTCCCTTTTCCTTTATTATTATATATTAAGAACAAC AGGGCTGATCGTTGATTGAACTCGTGTAAAATCACTCCTTAAACCATTAGCAAAGGCTGCCTGCTAGGGACTCATAATGG GTCTGACCCTTGCGTAAACCTTACACACATAGAAGAAACTTTATAGCATTTGCGTGTCCTTTTTAGTTTATTTTATGAAT ATGATAAAATATATTTCCAGTACTTATAAAGAACCACATTATCATTCTAAAAATATTTGTATACATTTCTGGTCAATCAT TATGAAGTCCCATTGAATGTGAACAATTGACACATTTATGAATATGCCAACTTATGTTGTGTAAGCTTTTGAGTCGAATA ATACTATGTGCAGGTGGTCAGCACGATTACTGCAATGATTTTGACTTGCGAAAGCCCTTGGATAGGCATTTTTTTGGTGG CATGAATGTAGATTGTGTTAGCTTCCAAGATTCTCCAAACCTTGCTACTCTTCAAGATCGTTGTGCTGGATTTCTCGCTC AATGCTCAAGGTGCAGTGATCTATAGAACTATTTTGAAATGTGCTGTTTAGAGATATAGGGTGGTTCTCAGATCTCCACC TAATAGCCAAAGATTTCAGGAGGATAGGTTCTTGACACTATTCTACTATTTAATCATGTTGCCACCCCTGGTTCTAAGTC AGCTTTTCAAGAACAGAATAAAATAAAATAAGATTAACTGTAAAAAGTTTTCTATTGGTGGTCTTATATCTACCATAGAC AATCTAAAATAAGAAGTTTACTCTCGTTAGCACTTAATTATCATAACTATCAATGGTTCTTGATGGTCTAATATCTAGCT GTCGGGTAGACTTTGTCCTTTGATATTGATGTGCACTTTGTGATCACAATTACTAATACAACATAGGGTTTATATATCTG GGCAGAAGTGTTTGCTAGTTTTGAAAATGCATACAAATGTTACAGTGGATCTTCAAAAATAGCTTTCAATATACTTATCA GAAACTCCCTTCGATATCATTCTCTTGAATGCTGGTGTATAAAGGATAACTAGGATTGCAGTTTTGGTAATTTTGTGCTT CATTCACTATTGATTATGGACCTTTCTCATGTATTAGATTCATGGCACATTGTTAGGACCCAGCCAAGAAGAAGATAGAA AGTATGATATTGTGGAAAATGAACCCTAATTCCCAAATAGGAATTAGAGATAAGGTACAAAGTTGCAGAGCATTCGAGAG GCTCTGCTCTCTCCCAAGTCCCAATTTCCTAAATGATCCCAAAAGATGCCTAAACTCTCCTAGCAATCCCTTATTTGTAG GCTATAAGCCCACTAACACTAAGCCCACTAACAATAAGCCCACTCTAATTCTAGGTCTCTATCATCACTCCCCCCCTAAA CATCCACCTTGTCCTCAAGGTGGGAAGAAATAGAACAAAAAGACCAACAATTTTAACCAGTTGGGCCAGGCCCAATACAA CACAAACCAAAAATAAAAATCAAAACAGAGTGCTTTTCTCTCCTCTTGGGCTCGTTCCTTCTGTAGCATTATGGGCTTTG GCCTTGTGGTCAAACTTTGACCCAATTCTGAAAAATCTAGCTGAGCCAGCCTTGCTCTGCCTCGTATGAACGCATGTGCG TGTGAAGACAACTGAAAAATCACACCCAACCAGCGATGACGGAAACTAGTGTCCACTGCCGTAACTGCAAAGTCCGGTGG CTTCGCCGGCAGCCGTAAAGCGGTTACCGGCTTGCGAATGAGCGAGCCTCCCTTCTCTTCCTCTGTGCGTTCTCCTAACT CTGGGCTACAATATCTCCAACCGCTGTCTCAGCCAAATCCGATGACTTAGCTGGAGGACGGTTGGCCACCAAGTCCGATC TGCAAGGATCGCCAAGGATGAAGCATGAACCGCCACCACTGCGGTCTGGTGGCTTAGTTTTCAGTCGAATGGCAACCATC GAAGAGCAAAGAACAGAGGTCTGAATGAAGACCTCCGTCCAGCAAAAGAACGTGTCTGGCGGTCGATTGGCGGTTACCGC CGTGCAGAGACATGAATCCGGCGGTTTCCGCGGTGGCCGTCTCTCACAATCGAACCCTAAATCACTGATTTGTGGAAAAA ACGATTGGTTGCACCTTCTTCTTCCTTTGAATGCTGCAAATCTGCAATTTCTCCATTGAAGAACCTTCCTGTAACCGCTT GAAGAAGATGACCTCCTCTGTTACGCCTCATGTTTCGACGTCAACGAGCAACCACTGAAATCGACCACGGCGACGGAATG ACACCGTGACATGACCATTGTTCGCTCTGCCGCCATTGCAAACTCCGAGTCTTCTTGCGACGCTTCCGTCTCGGAATTCT CTGGTGGTGGTAGCTCGATCTCTGATGGCGCTAACAACACTGAATTTGCCTCTGTTTTGGCTTCAATTAAATCTGTTTGT TCCTCCTCCCTGCGTTCTTGCGTTCTAGGGATTTCTTCCTCCCCTGAATCTTGATCTGGTTCTGGCAGGTACAAATCTGC TTCTGGTTCGAATTCTCTCAACAATGCCATCACAAAATCCATCCATGTTGCCCTCTGATTTCTTCTTTCCCAGGAATACC ACCAGTAGTAAGCATCTCCCCTCAAAGACCTCTTCGCCTCTGATAATTTCTTCTCTTCTGATATTCCCCTGGCCTCACAA TACTGTTCCACACTGATGAGCCATCCCCAAGCCTCTCTTCCATCGAATCTGGGCAACATTTGGCTACCACAGCACCTAGA TCGGTGCTCTGATACCATTGTTAGGACCCAGCCAAGAAGAAGATAGAAACTATGATATTGTGGAAAATGAACCCTAATTC CCAAATAGGAATTAGAGAGAAGGTACAAAGTTGCAGAGCATTCGAGAGGCTCTGCTCTCTCCCAAGTCCCAATTTCCTAA ATGATCCCAAAAGATGCCTAAACTCTCCTAGCAATCCCTTATTTGTAGGCTATAAGCCCACTAACACTAAGCCCACTAAC AATAAGCCCACTCTAATTCTAGGTCTCTATCACACATGATCAAAGATATATAAGTAAATAGAGACTGACTACCTTTTTCT AGCTTACCCTTTCCAAATTGCCTATAAATTTCTTGGTCTATTTCAATTTGGTTGTGATAAAGTCTACTTTGGTGATATTG TATCTAATTTATCTATAAAAATAGCTTGCTTTCTTTTCAATTTTTCATTCACTGATGGATCACATCTGCAGAAATGAAGG CGGCACTTCCCCTGCTGGTCGTATTGCAATTCAATCATTCTGTTCTCCACAGTGTAAATATGCAAACAATGTGAGTTAAT ATTCATTTTCCTTTGTGCTTTTCTTATTGTTTGAACTATGTTTCTTTGTTTTTGAACTGTATGTTCTTTTTTAAATGATT TCATATACTCTTACCTCTTTAGGAATTATATCTGATGGAAGATCCTTCATGTGATCCTTCTTGCATCTCAGCTGTTGATA ACTGTTCTTCATTCATTAATGTTGGATTTTTTCTAATGTGAAATAAGTGGTATAGCTTGGTTATTGCAGGAGTGGCATAT TCTTTCCTTTATTAGGTCACTGAGAGGCATGGCCCGTTCTTCAAATGCTGTTGTTGTTGTAACATTTCCACCTTCACTTC TATCTCCATCTTGTTCAAAAAGATTGCAGCATATGGCGGACACCTTGCTATCTGTCAAAGCAATTCCAGGTTCATAATCA ACTTTTATATTTTATGGGCTTTATTATTTAACAACTAGCTCAAATTTAACCACTAGAGTTTTTGTTTCAGATGAAGACAA GGAACTGGCGAAACTCCTAACTGGTTACCAAGACATGGTTGGGTTTTTAAATGTACATAAAGTTGCACGGTTAAATACAC AGGTTATATTCATGCTTCATTTTGATTTTATTTAGTCCTTTTATGTACACATGCTACTAGGAGTTCACAATGTGACTTGT TTGCAACTGTTAACACTTTACATCCATTTATCACATTATATATTTTTCTCTATCCTTTTATCTATCTCTCTCTCACACTT ACGCACAATATACTTTTAGTATTACTTTGCCTGAGTTATTAATTTATATCATAATTCATTTCCCATCTACATTTTTGTAA AGACAAGCAAATTGGAAACTTTATTGAGGAACAATGGATTTCTTGAAGCTTTGATCTATCTGAACAAGCTTATGTTGTTG AGTGTCTGATTTTCAACTTGCAGGTTCCTGTGATTCTTGAGGCCACAACATTCTCAATAAAGTTACAGAGACGAAGGTTT TTGGTTTTAGATTGTCTAAACCAAGCCCCAGTTGACGGTTCAAGCGGGAGTTCGTATGGCACATTGGGTGGCTGTTCTGG GTCAACTAAAGCTGGGTCACTTGATTTTTAGATTATACCTTGTTTATCACTTAAAATTGCACCACCCCAGCAATAGTCTT AGCTCGTGAAATGTATTCTTTTACTAGCATTTTTGTTGTTCCTTTCTCTTTGTTCTTTTCATAATCAGCATGTTTTACCA TTGATTCATCTCCAATGTATAGATACGTTCTTTAAAAGAGAGCATATATGAAGCAGTGATTCTTACACGACACTACACTA ACACACCGAAATGGCAAATCTTCAAAAACTAGAACATTAGGACACCGCTTCGGCCAAGTTGTCTCTTTACAAAGAAAAGA TAGAAACAATTTCCTAAACTCTATTACACTAGCTTTACAAAAAAAATTGTAAGACACCCTTTTATAAAGCAACCACATTG TCTGAAATCTATTAGTTTTCA
CDS sequence (LotjaGi3g1v0068800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCAACCAGGAGTCGAGTTAGTAGCTTTTCTCGGAATGTGTCAACTGCAACATCTCAGAATCCGGGGCTCAAGCA TGGCCCTAACGGGACCACGTTCATCTCATCCGGGATTCCGGATCTTGACAAGATTTTAGGTGGTGGTTTTTCCCTCGGTA GCCTTGTCATGATTATGGAAGATGCTGAGGCACCGCATCATATGCTTCTATTGAGAAATTTTATGTCTCAAGGACTTGTA CACAGACAGCCACTCTTGTATGCTAGTGCATCTAGAGACCCTAAAGGATTTCTCGGCACTTTGCCTAGTCCAGGGTCATC CAAAGAGGATAAATCTCGGGATCTTGGCCATGAAAAGGATCTGAGAATTGCTTGGCAGTACAAGAAGTACTTTGGTGAGC CTCAGCTAAATGTCAACTCTAATAATGGTGGTCAGCACGATTACTGCAATGATTTTGACTTGCGAAAGCCCTTGGATAGG CATTTTTTTGGTGGCATGAATGTAGATTGTGTTAGCTTCCAAGATTCTCCAAACCTTGCTACTCTTCAAGATCGTTGTGC TGGATTTCTCGCTCAATGCTCAAGAAATGAAGGCGGCACTTCCCCTGCTGGTCGTATTGCAATTCAATCATTCTGTTCTC CACAGTGTAAATATGCAAACAATGAGTGGCATATTCTTTCCTTTATTAGGTCACTGAGAGGCATGGCCCGTTCTTCAAAT GCTGTTGTTGTTGTAACATTTCCACCTTCACTTCTATCTCCATCTTGTTCAAAAAGATTGCAGCATATGGCGGACACCTT GCTATCTGTCAAAGCAATTCCAGATGAAGACAAGGAACTGGCGAAACTCCTAACTGGTTACCAAGACATGGTTGGGTTTT TAAATGTACATAAAGTTGCACGGTTAAATACACAGGTTCCTGTGATTCTTGAGGCCACAACATTCTCAATAAAGTTACAG AGACGAAGGTTTTTGGTTTTAGATTGTCTAAACCAAGCCCCAGTTGACGGTTCAAGCGGGAGTTCGTATGGCACATTGGG TGGCTGTTCTGGGTCAACTAAAGCTGGGTCACTTGATTTTTAG
Protein sequence (LotjaGi3g1v0068800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATRSRVSSFSRNVSTATSQNPGLKHGPNGTTFISSGIPDLDKILGGGFSLGSLVMIMEDAEAPHHMLLLRNFMSQGLV HRQPLLYASASRDPKGFLGTLPSPGSSKEDKSRDLGHEKDLRIAWQYKKYFGEPQLNVNSNNGGQHDYCNDFDLRKPLDR HFFGGMNVDCVSFQDSPNLATLQDRCAGFLAQCSRNEGGTSPAGRIAIQSFCSPQCKYANNEWHILSFIRSLRGMARSSN AVVVVTFPPSLLSPSCSKRLQHMADTLLSVKAIPDEDKELAKLLTGYQDMVGFLNVHKVARLNTQVPVILEATTFSIKLQ RRRFLVLDCLNQAPVDGSSGSSYGTLGGCSGSTKAGSLDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 8 | 345 | 338 | 1.8E-115 | ||
| Gene3D | 17 | 340 | 324 | 1.2E-66 | – | |
| Pfam | 19 | 360 | 342 | 1.4E-82 | ||
| SUPERFAMILY | 33 | 276 | 244 | 2.92E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | TRNA wobble uridine modification | The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. | ||
| Cellular component | Elongator holoenzyme complex | A heterohexameric protein complex that is involved in modification of wobble nucleosides in tRNA. The complex can associate physically with hyperphosphorylated RNA polymerase II; it contains two discrete heterotrimeric subcomplexes. |
Expression pattern of LotjaGi3g1v0068800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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