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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0068800 |
Transcript ID | LotjaGi3g1v0068800.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Elongator complex protein 4; TAIR: AT3G11220.1 Paxneb protein-like protein; Swiss-Prot: sp|Q9C778|ELP4_ARATH Elongator complex protein 4; TrEMBL-Plants: tr|A0A072TKF7|A0A072TKF7_MEDTR Elongator complex protein; Found in the gene: LotjaGi3g1v0068800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:7522673..7528456) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGCAACCAGGAGTCGAGTTAGTAGCTTTTCTCGGAATGTGTCAACTGCAACATCTCAGAATCCGGGGCTCAAGCA TGGCCCTAACGGGACCACGTTCATCTCATCCGGGATTCCGGATCTTGACAGTAATCATCTCTTTGACTTCCTTTAAATTA GTGTGTCTAGTGTCCTTTAAATGGATGAATTAAGGCCCTGTTTGGAAGAGCTTATTTGAGCTTATCTGATAGCATAAGCG CTTAAGTCAGTGTTTGGGAGAGCTTATGCAAACAGCTTATGGCCTACCATAAGCTGTTTTGAGCTTATTTTCATAAGTTA TTCAGGATATCTCATGAAAAAGAGCTTATGCTTATCTGTAGCTTATTTTCAATTTATTTGAATAAACTTTTTTAAATAGT TTATGACCATAAGCGCTTAATTAAGTTGTTTTCCCAAACGGGGCCTAAATAATTCTGTTTGATTCGTGTCTAGTGTCTTT TCATGGAAGATTCTTATGGGTTGTTTTTTTTTTAAATAGAGATTTTAGGTGGTGGTTTTTCCCTCGGTAGCCTTGTCATG ATTATGGAAGATGCTGAGGCACCGCATCATATGCTTCTATTGAGAAATTTTATGTCTCAAGGACTTGTACACAGACAGCC ACTCTTGTATGCTAGTGCATCTAGAGACCCTAAAGGATTTCTCGGCACTTTGCCTAGTCCAGGGTCATCCAAAGAGGATA AATCTCGGGATCTTGGCCATGTAAGTTTTTTACTGCTACACTGTGATGTATATCAATTACTTTTAATTTTGTTGTGGTAA TGTAATTTTTTTTTATCATGCTTTTGATTTCAGGAAAAGGATCTGAGAATTGCTTGGCAGTACAAGAAGTACTTTGGTGA GCCTCAGCTAAATGTCAACTCTAATAATGGTAAGCCTGTCCATAATCATCTCCTTGTTCTTAGTCTTATAATAGTCATTT CATTGTTATTACTTCATATATGGTATTATTTTTCTTGTCTCGACTATGAAATACATGCCTATCTTGTAGTTATTTTAACT AGGTCTTGAGAAGCAACCTTTCACTCAAAGGAAATTGAGTGTCTAGAAAAAGAGGCATTATATTGTTATACCATGTATGA CATCATTTCAAAATTCAAATTAATACACTTATGAGTATAACTATGTAAGTATTCCAAGTTTTGACTCAATTTAAGTTTTA ACTTCTAAGATTTGAAGTTTTATATCCCAAACTTTGTATAGATATCATATCCCATGAAGTTTACAATAGCAAGATAAAAA TATCAACAGGAAAACCAAAGCTAGTAACACTAGTTTCCTATTCTGTCATTGTCCTTCACCCCCAGTTTGCTGTAATTGTA GCCTCTCTATCATGCCTAATTTAATTCTAGAAGAGTGTTCCCTTTTCCTTTATTATTATATATTAAGAACAACAGGGCTG ATCGTTGATTGAACTCGTGTAAAATCACTCCTTAAACCATTAGCAAAGGCTGCCTGCTAGGGACTCATAATGGGTCTGAC CCTTGCGTAAACCTTACACACATAGAAGAAACTTTATAGCATTTGCGTGTCCTTTTTAGTTTATTTTATGAATATGATAA AATATATTTCCAGTACTTATAAAGAACCACATTATCATTCTAAAAATATTTGTATACATTTCTGGTCAATCATTATGAAG TCCCATTGAATGTGAACAATTGACACATTTATGAATATGCCAACTTATGTTGTGTAAGCTTTTGAGTCGAATAATACTAT GTGCAGGTGGTCAGCACGATTACTGCAATGATTTTGACTTGCGAAAGCCCTTGGATAGGCATTTTTTTGGTGGCATGAAT GTAGATTGTGTTAGCTTCCAAGATTCTCCAAACCTTGCTACTCTTCAAGATCGTTGTGCTGGATTTCTCGCTCAATGCTC AAGGTGCAGTGATCTATAGAACTATTTTGAAATGTGCTGTTTAGAGATATAGGGTGGTTCTCAGATCTCCACCTAATAGC CAAAGATTTCAGGAGGATAGGTTCTTGACACTATTCTACTATTTAATCATGTTGCCACCCCTGGTTCTAAGTCAGCTTTT CAAGAACAGAATAAAATAAAATAAGATTAACTGTAAAAAGTTTTCTATTGGTGGTCTTATATCTACCATAGACAATCTAA AATAAGAAGTTTACTCTCGTTAGCACTTAATTATCATAACTATCAATGGTTCTTGATGGTCTAATATCTAGCTGTCGGGT AGACTTTGTCCTTTGATATTGATGTGCACTTTGTGATCACAATTACTAATACAACATAGGGTTTATATATCTGGGCAGAA GTGTTTGCTAGTTTTGAAAATGCATACAAATGTTACAGTGGATCTTCAAAAATAGCTTTCAATATACTTATCAGAAACTC CCTTCGATATCATTCTCTTGAATGCTGGTGTATAAAGGATAACTAGGATTGCAGTTTTGGTAATTTTGTGCTTCATTCAC TATTGATTATGGACCTTTCTCATGTATTAGATTCATGGCACATTGTTAGGACCCAGCCAAGAAGAAGATAGAAAGTATGA TATTGTGGAAAATGAACCCTAATTCCCAAATAGGAATTAGAGATAAGGTACAAAGTTGCAGAGCATTCGAGAGGCTCTGC TCTCTCCCAAGTCCCAATTTCCTAAATGATCCCAAAAGATGCCTAAACTCTCCTAGCAATCCCTTATTTGTAGGCTATAA GCCCACTAACACTAAGCCCACTAACAATAAGCCCACTCTAATTCTAGGTCTCTATCATCACTCCCCCCCTAAACATCCAC CTTGTCCTCAAGGTGGGAAGAAATAGAACAAAAAGACCAACAATTTTAACCAGTTGGGCCAGGCCCAATACAACACAAAC CAAAAATAAAAATCAAAACAGAGTGCTTTTCTCTCCTCTTGGGCTCGTTCCTTCTGTAGCATTATGGGCTTTGGCCTTGT GGTCAAACTTTGACCCAATTCTGAAAAATCTAGCTGAGCCAGCCTTGCTCTGCCTCGTATGAACGCATGTGCGTGTGAAG ACAACTGAAAAATCACACCCAACCAGCGATGACGGAAACTAGTGTCCACTGCCGTAACTGCAAAGTCCGGTGGCTTCGCC GGCAGCCGTAAAGCGGTTACCGGCTTGCGAATGAGCGAGCCTCCCTTCTCTTCCTCTGTGCGTTCTCCTAACTCTGGGCT ACAATATCTCCAACCGCTGTCTCAGCCAAATCCGATGACTTAGCTGGAGGACGGTTGGCCACCAAGTCCGATCTGCAAGG ATCGCCAAGGATGAAGCATGAACCGCCACCACTGCGGTCTGGTGGCTTAGTTTTCAGTCGAATGGCAACCATCGAAGAGC AAAGAACAGAGGTCTGAATGAAGACCTCCGTCCAGCAAAAGAACGTGTCTGGCGGTCGATTGGCGGTTACCGCCGTGCAG AGACATGAATCCGGCGGTTTCCGCGGTGGCCGTCTCTCACAATCGAACCCTAAATCACTGATTTGTGGAAAAAACGATTG GTTGCACCTTCTTCTTCCTTTGAATGCTGCAAATCTGCAATTTCTCCATTGAAGAACCTTCCTGTAACCGCTTGAAGAAG ATGACCTCCTCTGTTACGCCTCATGTTTCGACGTCAACGAGCAACCACTGAAATCGACCACGGCGACGGAATGACACCGT GACATGACCATTGTTCGCTCTGCCGCCATTGCAAACTCCGAGTCTTCTTGCGACGCTTCCGTCTCGGAATTCTCTGGTGG TGGTAGCTCGATCTCTGATGGCGCTAACAACACTGAATTTGCCTCTGTTTTGGCTTCAATTAAATCTGTTTGTTCCTCCT CCCTGCGTTCTTGCGTTCTAGGGATTTCTTCCTCCCCTGAATCTTGATCTGGTTCTGGCAGGTACAAATCTGCTTCTGGT TCGAATTCTCTCAACAATGCCATCACAAAATCCATCCATGTTGCCCTCTGATTTCTTCTTTCCCAGGAATACCACCAGTA GTAAGCATCTCCCCTCAAAGACCTCTTCGCCTCTGATAATTTCTTCTCTTCTGATATTCCCCTGGCCTCACAATACTGTT CCACACTGATGAGCCATCCCCAAGCCTCTCTTCCATCGAATCTGGGCAACATTTGGCTACCACAGCACCTAGATCGGTGC TCTGATACCATTGTTAGGACCCAGCCAAGAAGAAGATAGAAACTATGATATTGTGGAAAATGAACCCTAATTCCCAAATA GGAATTAGAGAGAAGGTACAAAGTTGCAGAGCATTCGAGAGGCTCTGCTCTCTCCCAAGTCCCAATTTCCTAAATGATCC CAAAAGATGCCTAAACTCTCCTAGCAATCCCTTATTTGTAGGCTATAAGCCCACTAACACTAAGCCCACTAACAATAAGC CCACTCTAATTCTAGGTCTCTATCACACATGATCAAAGATATATAAGTAAATAGAGACTGACTACCTTTTTCTAGCTTAC CCTTTCCAAATTGCCTATAAATTTCTTGGTCTATTTCAATTTGGTTGTGATAAAGTCTACTTTGGTGATATTGTATCTAA TTTATCTATAAAAATAGCTTGCTTTCTTTTCAATTTTTCATTCACTGATGGATCACATCTGCAGAAATGAAGGCGGCACT TCCCCTGCTGGTCGTATTGCAATTCAATCATTCTGTTCTCCACAGTGTAAATATGCAAACAATGTGAGTTAATATTCATT TTCCTTTGTGCTTTTCTTATTGTTTGAACTATGTTTCTTTGTTTTTGAACTGTATGTTCTTTTTTAAATGATTTCATATA CTCTTACCTCTTTAGGAATTATATCTGATGGAAGATCCTTCATGTGATCCTTCTTGCATCTCAGCTGTTGATAACTGTTC TTCATTCATTAATGTTGGATTTTTTCTAATGTGAAATAAGTGGTATAGCTTGGTTATTGCAGGAGTGGCATATTCTTTCC TTTATTAGGTCACTGAGAGGCATGGCCCGTTCTTCAAATGCTGTTGTTGTTGTAACATTTCCACCTTCACTTCTATCTCC ATCTTGTTCAAAAAGATTGCAGCATATGGCGGACACCTTGCTATCTGTCAAAGCAATTCCAGGTTCATAATCAACTTTTA TATTTTATGGGCTTTATTATTTAACAACTAGCTCAAATTTAACCACTAGAGTTTTTGTTTCAGATGAAGACAAGGAACTG GCGAAACTCCTAACTGGTTACCAAGACATGGTTGGGTTTTTAAATGTACATAAAGTTGCACGGTTAAATACACAGGTTAT ATTCATGCTTCATTTTGATTTTATTTAGTCCTTTTATGTACACATGCTACTAGGAGTTCACAATGTGACTTGTTTGCAAC TGTTAACACTTTACATCCATTTATCACATTATATATTTTTCTCTATCCTTTTATCTATCTCTCTCTCACACTTACGCACA ATATACTTTTAGTATTACTTTGCCTGAGTTATTAATTTATATCATAATTCATTTCCCATCTACATTTTTGTAAAGACAAG CAAATTGGAAACTTTATTGAGGAACAATGGATTTCTTGAAGCTTTGATCTATCTGAACAAGCTTATGTTGTTGAGTGTCT GATTTTCAACTTGCAGGTTCCTGTGATTCTTGAGGCCACAACATTCTCAATAAAGTTACAGAGACGAAGGTTTTTGGTTT TAGATTGTCTAAACCAAGCCCCAGTTGACGGTTCAAGCGGGAGTTCGTATGGCACATTGGGTGGCTGTTCTGGGTCAACT AAAGCTGGGTCACTTGATTTTTAG
CDS sequence (LotjaGi3g1v0068800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCAACCAGGAGTCGAGTTAGTAGCTTTTCTCGGAATGTGTCAACTGCAACATCTCAGAATCCGGGGCTCAAGCA TGGCCCTAACGGGACCACGTTCATCTCATCCGGGATTCCGGATCTTGACAAGATTTTAGGTGGTGGTTTTTCCCTCGGTA GCCTTGTCATGATTATGGAAGATGCTGAGGCACCGCATCATATGCTTCTATTGAGAAATTTTATGTCTCAAGGACTTGTA CACAGACAGCCACTCTTGTATGCTAGTGCATCTAGAGACCCTAAAGGATTTCTCGGCACTTTGCCTAGTCCAGGGTCATC CAAAGAGGATAAATCTCGGGATCTTGGCCATGAAAAGGATCTGAGAATTGCTTGGCAGTACAAGAAGTACTTTGGTGAGC CTCAGCTAAATGTCAACTCTAATAATGGTGGTCAGCACGATTACTGCAATGATTTTGACTTGCGAAAGCCCTTGGATAGG CATTTTTTTGGTGGCATGAATGTAGATTGTGTTAGCTTCCAAGATTCTCCAAACCTTGCTACTCTTCAAGATCGTTGTGC TGGATTTCTCGCTCAATTCTGCAGAAATGAAGGCGGCACTTCCCCTGCTGGTCGTATTGCAATTCAATCATTCTGTTCTC CACAGTGTAAATATGCAAACAATGAGTGGCATATTCTTTCCTTTATTAGGTCACTGAGAGGCATGGCCCGTTCTTCAAAT GCTGTTGTTGTTGTAACATTTCCACCTTCACTTCTATCTCCATCTTGTTCAAAAAGATTGCAGCATATGGCGGACACCTT GCTATCTGTCAAAGCAATTCCAGATGAAGACAAGGAACTGGCGAAACTCCTAACTGGTTACCAAGACATGGTTGGGTTTT TAAATGTACATAAAGTTGCACGGTTAAATACACAGGTTCCTGTGATTCTTGAGGCCACAACATTCTCAATAAAGTTACAG AGACGAAGGTTTTTGGTTTTAGATTGTCTAAACCAAGCCCCAGTTGACGGTTCAAGCGGGAGTTCGTATGGCACATTGGG TGGCTGTTCTGGGTCAACTAAAGCTGGGTCACTTGATTTTTAG
Protein sequence (LotjaGi3g1v0068800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATRSRVSSFSRNVSTATSQNPGLKHGPNGTTFISSGIPDLDKILGGGFSLGSLVMIMEDAEAPHHMLLLRNFMSQGLV HRQPLLYASASRDPKGFLGTLPSPGSSKEDKSRDLGHEKDLRIAWQYKKYFGEPQLNVNSNNGGQHDYCNDFDLRKPLDR HFFGGMNVDCVSFQDSPNLATLQDRCAGFLAQFCRNEGGTSPAGRIAIQSFCSPQCKYANNEWHILSFIRSLRGMARSSN AVVVVTFPPSLLSPSCSKRLQHMADTLLSVKAIPDEDKELAKLLTGYQDMVGFLNVHKVARLNTQVPVILEATTFSIKLQ RRRFLVLDCLNQAPVDGSSGSSYGTLGGCSGSTKAGSLDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 32 | 32 | - | – | |
PANTHER | 8 | 345 | 338 | 1.6E-114 | ||
Gene3D | 17 | 340 | 324 | 1.3E-66 | – | |
Pfam | 19 | 360 | 342 | 3.5E-82 | ||
SUPERFAMILY | 33 | 276 | 244 | 2.92E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | TRNA wobble uridine modification | The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. | ||
Cellular component | Elongator holoenzyme complex | A heterohexameric protein complex that is involved in modification of wobble nucleosides in tRNA. The complex can associate physically with hyperphosphorylated RNA polymerase II; it contains two discrete heterotrimeric subcomplexes. |
Expression pattern of LotjaGi3g1v0068800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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