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LotjaGi3g1v0068800.3

Overview

Field Value
Gene ID LotjaGi3g1v0068800
Transcript ID LotjaGi3g1v0068800.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Elongator complex protein 4; TAIR: AT3G11220.1 Paxneb protein-like protein; Swiss-Prot: sp|Q9C778|ELP4_ARATH Elongator complex protein 4; TrEMBL-Plants: tr|A0A072TKF7|A0A072TKF7_MEDTR Elongator complex protein; Found in the gene: LotjaGi3g1v0068800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:7522673..7528456) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTGCAACCAGGAGTCGAGTTAGTAGCTTTTCTCGGAATGTGTCAACTGCAACATCTCAGAATCCGGGGCTCAAGCA TGGCCCTAACGGGACCACGTTCATCTCATCCGGGATTCCGGATCTTGACAGTAATCATCTCTTTGACTTCCTTTAAATTA GTGTGTCTAGTGTCCTTTAAATGGATGAATTAAGGCCCTGTTTGGAAGAGCTTATTTGAGCTTATCTGATAGCATAAGCG CTTAAGTCAGTGTTTGGGAGAGCTTATGCAAACAGCTTATGGCCTACCATAAGCTGTTTTGAGCTTATTTTCATAAGTTA TTCAGGATATCTCATGAAAAAGAGCTTATGCTTATCTGTAGCTTATTTTCAATTTATTTGAATAAACTTTTTTAAATAGT TTATGACCATAAGCGCTTAATTAAGTTGTTTTCCCAAACGGGGCCTAAATAATTCTGTTTGATTCGTGTCTAGTGTCTTT TCATGGAAGATTCTTATGGGTTGTTTTTTTTTTAAATAGAGATTTTAGGTGGTGGTTTTTCCCTCGGTAGCCTTGTCATG ATTATGGAAGATGCTGAGGCACCGCATCATATGCTTCTATTGAGAAATTTTATGTCTCAAGGACTTGTACACAGACAGCC ACTCTTGTATGCTAGTGCATCTAGAGACCCTAAAGGATTTCTCGGCACTTTGCCTAGTCCAGGGTCATCCAAAGAGGATA AATCTCGGGATCTTGGCCATGTAAGTTTTTTACTGCTACACTGTGATGTATATCAATTACTTTTAATTTTGTTGTGGTAA TGTAATTTTTTTTTATCATGCTTTTGATTTCAGGAAAAGGATCTGAGAATTGCTTGGCAGTACAAGAAGTACTTTGGTGA GCCTCAGCTAAATGTCAACTCTAATAATGGTAAGCCTGTCCATAATCATCTCCTTGTTCTTAGTCTTATAATAGTCATTT CATTGTTATTACTTCATATATGGTATTATTTTTCTTGTCTCGACTATGAAATACATGCCTATCTTGTAGTTATTTTAACT AGGTCTTGAGAAGCAACCTTTCACTCAAAGGAAATTGAGTGTCTAGAAAAAGAGGCATTATATTGTTATACCATGTATGA CATCATTTCAAAATTCAAATTAATACACTTATGAGTATAACTATGTAAGTATTCCAAGTTTTGACTCAATTTAAGTTTTA ACTTCTAAGATTTGAAGTTTTATATCCCAAACTTTGTATAGATATCATATCCCATGAAGTTTACAATAGCAAGATAAAAA TATCAACAGGAAAACCAAAGCTAGTAACACTAGTTTCCTATTCTGTCATTGTCCTTCACCCCCAGTTTGCTGTAATTGTA GCCTCTCTATCATGCCTAATTTAATTCTAGAAGAGTGTTCCCTTTTCCTTTATTATTATATATTAAGAACAACAGGGCTG ATCGTTGATTGAACTCGTGTAAAATCACTCCTTAAACCATTAGCAAAGGCTGCCTGCTAGGGACTCATAATGGGTCTGAC CCTTGCGTAAACCTTACACACATAGAAGAAACTTTATAGCATTTGCGTGTCCTTTTTAGTTTATTTTATGAATATGATAA AATATATTTCCAGTACTTATAAAGAACCACATTATCATTCTAAAAATATTTGTATACATTTCTGGTCAATCATTATGAAG TCCCATTGAATGTGAACAATTGACACATTTATGAATATGCCAACTTATGTTGTGTAAGCTTTTGAGTCGAATAATACTAT GTGCAGGTGGTCAGCACGATTACTGCAATGATTTTGACTTGCGAAAGCCCTTGGATAGGCATTTTTTTGGTGGCATGAAT GTAGATTGTGTTAGCTTCCAAGATTCTCCAAACCTTGCTACTCTTCAAGATCGTTGTGCTGGATTTCTCGCTCAATGCTC AAGGTGCAGTGATCTATAGAACTATTTTGAAATGTGCTGTTTAGAGATATAGGGTGGTTCTCAGATCTCCACCTAATAGC CAAAGATTTCAGGAGGATAGGTTCTTGACACTATTCTACTATTTAATCATGTTGCCACCCCTGGTTCTAAGTCAGCTTTT CAAGAACAGAATAAAATAAAATAAGATTAACTGTAAAAAGTTTTCTATTGGTGGTCTTATATCTACCATAGACAATCTAA AATAAGAAGTTTACTCTCGTTAGCACTTAATTATCATAACTATCAATGGTTCTTGATGGTCTAATATCTAGCTGTCGGGT AGACTTTGTCCTTTGATATTGATGTGCACTTTGTGATCACAATTACTAATACAACATAGGGTTTATATATCTGGGCAGAA GTGTTTGCTAGTTTTGAAAATGCATACAAATGTTACAGTGGATCTTCAAAAATAGCTTTCAATATACTTATCAGAAACTC CCTTCGATATCATTCTCTTGAATGCTGGTGTATAAAGGATAACTAGGATTGCAGTTTTGGTAATTTTGTGCTTCATTCAC TATTGATTATGGACCTTTCTCATGTATTAGATTCATGGCACATTGTTAGGACCCAGCCAAGAAGAAGATAGAAAGTATGA TATTGTGGAAAATGAACCCTAATTCCCAAATAGGAATTAGAGATAAGGTACAAAGTTGCAGAGCATTCGAGAGGCTCTGC TCTCTCCCAAGTCCCAATTTCCTAAATGATCCCAAAAGATGCCTAAACTCTCCTAGCAATCCCTTATTTGTAGGCTATAA GCCCACTAACACTAAGCCCACTAACAATAAGCCCACTCTAATTCTAGGTCTCTATCATCACTCCCCCCCTAAACATCCAC CTTGTCCTCAAGGTGGGAAGAAATAGAACAAAAAGACCAACAATTTTAACCAGTTGGGCCAGGCCCAATACAACACAAAC CAAAAATAAAAATCAAAACAGAGTGCTTTTCTCTCCTCTTGGGCTCGTTCCTTCTGTAGCATTATGGGCTTTGGCCTTGT GGTCAAACTTTGACCCAATTCTGAAAAATCTAGCTGAGCCAGCCTTGCTCTGCCTCGTATGAACGCATGTGCGTGTGAAG ACAACTGAAAAATCACACCCAACCAGCGATGACGGAAACTAGTGTCCACTGCCGTAACTGCAAAGTCCGGTGGCTTCGCC GGCAGCCGTAAAGCGGTTACCGGCTTGCGAATGAGCGAGCCTCCCTTCTCTTCCTCTGTGCGTTCTCCTAACTCTGGGCT ACAATATCTCCAACCGCTGTCTCAGCCAAATCCGATGACTTAGCTGGAGGACGGTTGGCCACCAAGTCCGATCTGCAAGG ATCGCCAAGGATGAAGCATGAACCGCCACCACTGCGGTCTGGTGGCTTAGTTTTCAGTCGAATGGCAACCATCGAAGAGC AAAGAACAGAGGTCTGAATGAAGACCTCCGTCCAGCAAAAGAACGTGTCTGGCGGTCGATTGGCGGTTACCGCCGTGCAG AGACATGAATCCGGCGGTTTCCGCGGTGGCCGTCTCTCACAATCGAACCCTAAATCACTGATTTGTGGAAAAAACGATTG GTTGCACCTTCTTCTTCCTTTGAATGCTGCAAATCTGCAATTTCTCCATTGAAGAACCTTCCTGTAACCGCTTGAAGAAG ATGACCTCCTCTGTTACGCCTCATGTTTCGACGTCAACGAGCAACCACTGAAATCGACCACGGCGACGGAATGACACCGT GACATGACCATTGTTCGCTCTGCCGCCATTGCAAACTCCGAGTCTTCTTGCGACGCTTCCGTCTCGGAATTCTCTGGTGG TGGTAGCTCGATCTCTGATGGCGCTAACAACACTGAATTTGCCTCTGTTTTGGCTTCAATTAAATCTGTTTGTTCCTCCT CCCTGCGTTCTTGCGTTCTAGGGATTTCTTCCTCCCCTGAATCTTGATCTGGTTCTGGCAGGTACAAATCTGCTTCTGGT TCGAATTCTCTCAACAATGCCATCACAAAATCCATCCATGTTGCCCTCTGATTTCTTCTTTCCCAGGAATACCACCAGTA GTAAGCATCTCCCCTCAAAGACCTCTTCGCCTCTGATAATTTCTTCTCTTCTGATATTCCCCTGGCCTCACAATACTGTT CCACACTGATGAGCCATCCCCAAGCCTCTCTTCCATCGAATCTGGGCAACATTTGGCTACCACAGCACCTAGATCGGTGC TCTGATACCATTGTTAGGACCCAGCCAAGAAGAAGATAGAAACTATGATATTGTGGAAAATGAACCCTAATTCCCAAATA GGAATTAGAGAGAAGGTACAAAGTTGCAGAGCATTCGAGAGGCTCTGCTCTCTCCCAAGTCCCAATTTCCTAAATGATCC CAAAAGATGCCTAAACTCTCCTAGCAATCCCTTATTTGTAGGCTATAAGCCCACTAACACTAAGCCCACTAACAATAAGC CCACTCTAATTCTAGGTCTCTATCACACATGATCAAAGATATATAAGTAAATAGAGACTGACTACCTTTTTCTAGCTTAC CCTTTCCAAATTGCCTATAAATTTCTTGGTCTATTTCAATTTGGTTGTGATAAAGTCTACTTTGGTGATATTGTATCTAA TTTATCTATAAAAATAGCTTGCTTTCTTTTCAATTTTTCATTCACTGATGGATCACATCTGCAGAAATGAAGGCGGCACT TCCCCTGCTGGTCGTATTGCAATTCAATCATTCTGTTCTCCACAGTGTAAATATGCAAACAATGTGAGTTAATATTCATT TTCCTTTGTGCTTTTCTTATTGTTTGAACTATGTTTCTTTGTTTTTGAACTGTATGTTCTTTTTTAAATGATTTCATATA CTCTTACCTCTTTAGGAATTATATCTGATGGAAGATCCTTCATGTGATCCTTCTTGCATCTCAGCTGTTGATAACTGTTC TTCATTCATTAATGTTGGATTTTTTCTAATGTGAAATAAGTGGTATAGCTTGGTTATTGCAGGAGTGGCATATTCTTTCC TTTATTAGGTCACTGAGAGGCATGGCCCGTTCTTCAAATGCTGTTGTTGTTGTAACATTTCCACCTTCACTTCTATCTCC ATCTTGTTCAAAAAGATTGCAGCATATGGCGGACACCTTGCTATCTGTCAAAGCAATTCCAGGTTCATAATCAACTTTTA TATTTTATGGGCTTTATTATTTAACAACTAGCTCAAATTTAACCACTAGAGTTTTTGTTTCAGATGAAGACAAGGAACTG GCGAAACTCCTAACTGGTTACCAAGACATGGTTGGGTTTTTAAATGTACATAAAGTTGCACGGTTAAATACACAGGTTAT ATTCATGCTTCATTTTGATTTTATTTAGTCCTTTTATGTACACATGCTACTAGGAGTTCACAATGTGACTTGTTTGCAAC TGTTAACACTTTACATCCATTTATCACATTATATATTTTTCTCTATCCTTTTATCTATCTCTCTCTCACACTTACGCACA ATATACTTTTAGTATTACTTTGCCTGAGTTATTAATTTATATCATAATTCATTTCCCATCTACATTTTTGTAAAGACAAG CAAATTGGAAACTTTATTGAGGAACAATGGATTTCTTGAAGCTTTGATCTATCTGAACAAGCTTATGTTGTTGAGTGTCT GATTTTCAACTTGCAGGTTCCTGTGATTCTTGAGGCCACAACATTCTCAATAAAGTTACAGAGACGAAGGTTTTTGGTTT TAGATTGTCTAAACCAAGCCCCAGTTGACGGTTCAAGCGGGAGTTCGTATGGCACATTGGGTGGCTGTTCTGGGTCAACT AAAGCTGGGTCACTTGATTTTTAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0068800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGCAACCAGGAGTCGAGTTAGTAGCTTTTCTCGGAATGTGTCAACTGCAACATCTCAGAATCCGGGGCTCAAGCA TGGCCCTAACGGGACCACGTTCATCTCATCCGGGATTCCGGATCTTGACAAGATTTTAGGTGGTGGTTTTTCCCTCGGTA GCCTTGTCATGATTATGGAAGATGCTGAGGCACCGCATCATATGCTTCTATTGAGAAATTTTATGTCTCAAGGACTTGTA CACAGACAGCCACTCTTGTATGCTAGTGCATCTAGAGACCCTAAAGGATTTCTCGGCACTTTGCCTAGTCCAGGGTCATC CAAAGAGGATAAATCTCGGGATCTTGGCCATGAAAAGGATCTGAGAATTGCTTGGCAGTACAAGAAGTACTTTGGTGAGC CTCAGCTAAATGTCAACTCTAATAATGGTGGTCAGCACGATTACTGCAATGATTTTGACTTGCGAAAGCCCTTGGATAGG CATTTTTTTGGTGGCATGAATGTAGATTGTGTTAGCTTCCAAGATTCTCCAAACCTTGCTACTCTTCAAGATCGTTGTGC TGGATTTCTCGCTCAATGCTCAAGGTGCAGTACAAATCTTTCCCCTGCTGGTCGTATTGCAATTCAATCATTCTGTTCTC CACAGTGTAAATATGCAAACAATGAGTGGCATATTCTTTCCTTTATTAGGTCACTGAGAGGCATGGCCCGTTCTTCAAAT GCTGTTGTTGTTGTAACATTTCCACCTTCACTTCTATCTCCATCTTGTTCAAAAAGATTGCAGCATATGGCGGACACCTT GCTATCTGTCAAAGCAATTCCAGATGAAGACAAGGAACTGGCGAAACTCCTAACTGGTTACCAAGACATGGTTGGGTTTT TAAATGTACATAAAGTTGCACGGTTAAATACACAGGTTCCTGTGATTCTTGAGGCCACAACATTCTCAATAAAGTTACAG AGACGAAGGTTTTTGGTTTTAGATTGTCTAAACCAAGCCCCAGTTGACGGTTCAAGCGGGAGTTCGTATGGCACATTGGG TGGCTGTTCTGGGTCAACTAAAGCTGGGTCACTTGATTTTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0068800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAATRSRVSSFSRNVSTATSQNPGLKHGPNGTTFISSGIPDLDKILGGGFSLGSLVMIMEDAEAPHHMLLLRNFMSQGLV HRQPLLYASASRDPKGFLGTLPSPGSSKEDKSRDLGHEKDLRIAWQYKKYFGEPQLNVNSNNGGQHDYCNDFDLRKPLDR HFFGGMNVDCVSFQDSPNLATLQDRCAGFLAQCSRCSTNLSPAGRIAIQSFCSPQCKYANNEWHILSFIRSLRGMARSSN AVVVVTFPPSLLSPSCSKRLQHMADTLLSVKAIPDEDKELAKLLTGYQDMVGFLNVHKVARLNTQVPVILEATTFSIKLQ RRRFLVLDCLNQAPVDGSSGSSYGTLGGCSGSTKAGSLDF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 32 32 - –
PANTHER
PTHR12896
8 345 338 2.8E-115
IPR008728
Gene3D
G3DSA:3.40.50.300
17 340 324 1.2E-66 –
Pfam
PF05625
19 360 342 1.3E-81
IPR008728
SUPERFAMILY
SSF52540
33 276 244 6.38E-8
IPR027417

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0002098
Biological process TRNA wobble uridine modification The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
Subterm of
GO:0033588
Cellular component Elongator holoenzyme complex A heterohexameric protein complex that is involved in modification of wobble nucleosides in tRNA. The complex can associate physically with hyperphosphorylated RNA polymerase II; it contains two discrete heterotrimeric subcomplexes.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0068800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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