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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0069000 |
| Transcript ID | LotjaGi3g1v0069000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G71460.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9C9I3|PP115_ARATH Pentatricopeptide repeat-containing protein At1g71460, chloroplastic; TrEMBL-Plants: tr|A0A0B2RH34|A0A0B2RH34_GLYSO Pentatricopeptide repeat-containing protein, chloroplastic; Found in the gene: LotjaGi3g1v0069000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:7538009..7539819) extracted from Lotus japonicus Gifu genome v1.2.
ATAATACGAGAGTTAGACTTTGTTTCAAAACTCATATTTTGCGTTTCAGCTTTCTTTAGGTTCCATGAGAATGAGAATTT CTGCAGCAATAATTCAGACACCACCAAACAATGCAGCTCCTCGGGACACCCTTTTTTTCTTTCTTTCTATTTTTTCCAGT CACATGACATATTATTATATCATGCTTATCACTTAATGCACAATATTTTATCTTTATATTCATTTATTATTTTGTTGACT TTGAATTATGTCTAATATTAATATACATTCATGTTTCTAAAATGACAGTATTTCTATTACTTCCTTCGATATAACATGGT AAATTCATCTGGCGATGTTCTTGAGAACCTTAGAAATAGGCAGTAGCAGACGATTTAAACATCCATGCCTGGCTAACAGT GCACCTAAATTCTAGATTCTTGCCTTAGATATTAATTTATAGGATAGGATATAACATACTCCGTACTATGTTTGAATTTC TGAGTAAACTTGTATCTGTTTGTGGCTCTGCCCTCTGGTGTCGGAAGCACACGTAACACTTGACAGTTGATACAGTTATG CCATGTTATTCTGTGTGCATCACTTGATTGTGGTGGCATATCCATGTTCCAAATCCTCCAACCAAATGCAAACCTCTGTT TCAACCTCTGCATCTCTTTCACTCCCTCTTCCTCCTCACTCCTTCCCTCCAATTCCAAACACTTTCCCCCTCTCCAACTT CAAACCTCTCTCCCTATCATCACAACAACAAAAAGAACCACTTCCCTCACCCTCAACACCACCTCACACAAAACCCCCAC ACCCCAATGACCCTTCTTCTCTCATCCAGTTACACTTCAAGCGTGGGAACGTTGACCTCGCGCGCCAAGTGTTTGAGGAA AGTCCCCGCAGAAGCGTTAGTGCTTGGAATGCCATGATCTCCGGTCTTGCTCACAATGGCTTTCCGAGGGAAGCGTTGGA ATATGTGAGGCTAATGTTAGAGGAAGGAAAAAGGCCGAATTGGATTACCATGATGGTGATTCTTCCCATTTGTGCTAAGT TGAGGACACTGAAACAAGGGAAGGAGGTTCATGCTTATGCTTTGAAACGTCGGTTCCTGCCTCACGTGACCATGGTTTCT TCGTTGATGGTGATGTACTCGAAGTGCGGCGTGATTGGGTATTCCATTAGGCTGTTTGATGGAATGGAGAAAAAGAATGT GATTTTGTGGACGGCCATGATTGATTCGTGTGTGGAAAATGGGTTTCTGAATGAAGCTCTTGCTGTCATGAGGTCAATGC AATTGACGCGGCAGAGGGCAGACACGGTTACCTTAACGAGGATGTTGTGTGTTTGTGGCGAACTGAGACGCGTGAAGCTC GGGAAGGAGGTCCATGGGCAGGTTTTGAAACTGGGTTTTGCATCAGTGCATTATGTCGCTGCAGAACTTATCAACATGTA TGGGGCTTGTGGAGTTTTTGATAATGCAAAGCTGGTGTTTGGTGCTGTTCCTGATAAAGGTTCAATGACATGGACTGCTC TTATAAGGGCATATGGATATAAAGAATGGTATCGAGAAGCAATTGACCTTTTCGATCTGATGATGTCGAATGGTTGTTCT CCAAACACCTTCACTTTTGAAGCTGTTCTTTCTATTTGCGATAGGGCTGGGTTTGTTGAAGATGCTTTTAGGTTCTTTGA TTTAATGTCTACATATGAAATTGAAGCATCCAAGGAACACTGTACTTTTATGGTTCAACTTCTTACCCGCTATGGTAAAC TAGATGAGGCTCAAAGATTTTTAGAAATGAGTCCTTCCTTGTAGCAGAGGC
CDS sequence (LotjaGi3g1v0069000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTATTCTGTGTGCATCACTTGATTGTGGTGGCATATCCATGTTCCAAATCCTCCAACCAAATGCAAACCTCTGTTTC AACCTCTGCATCTCTTTCACTCCCTCTTCCTCCTCACTCCTTCCCTCCAATTCCAAACACTTTCCCCCTCTCCAACTTCA AACCTCTCTCCCTATCATCACAACAACAAAAAGAACCACTTCCCTCACCCTCAACACCACCTCACACAAAACCCCCACAC CCCAATGACCCTTCTTCTCTCATCCAGTTACACTTCAAGCGTGGGAACGTTGACCTCGCGCGCCAAGTGTTTGAGGAAAG TCCCCGCAGAAGCGTTAGTGCTTGGAATGCCATGATCTCCGGTCTTGCTCACAATGGCTTTCCGAGGGAAGCGTTGGAAT ATGTGAGGCTAATGTTAGAGGAAGGAAAAAGGCCGAATTGGATTACCATGATGGTGATTCTTCCCATTTGTGCTAAGTTG AGGACACTGAAACAAGGGAAGGAGGTTCATGCTTATGCTTTGAAACGTCGGTTCCTGCCTCACGTGACCATGGTTTCTTC GTTGATGGTGATGTACTCGAAGTGCGGCGTGATTGGGTATTCCATTAGGCTGTTTGATGGAATGGAGAAAAAGAATGTGA TTTTGTGGACGGCCATGATTGATTCGTGTGTGGAAAATGGGTTTCTGAATGAAGCTCTTGCTGTCATGAGGTCAATGCAA TTGACGCGGCAGAGGGCAGACACGGTTACCTTAACGAGGATGTTGTGTGTTTGTGGCGAACTGAGACGCGTGAAGCTCGG GAAGGAGGTCCATGGGCAGGTTTTGAAACTGGGTTTTGCATCAGTGCATTATGTCGCTGCAGAACTTATCAACATGTATG GGGCTTGTGGAGTTTTTGATAATGCAAAGCTGGTGTTTGGTGCTGTTCCTGATAAAGGTTCAATGACATGGACTGCTCTT ATAAGGGCATATGGATATAAAGAATGGTATCGAGAAGCAATTGACCTTTTCGATCTGATGATGTCGAATGGTTGTTCTCC AAACACCTTCACTTTTGAAGCTGTTCTTTCTATTTGCGATAGGGCTGGGTTTGTTGAAGATGCTTTTAGGTTCTTTGATT TAATGTCTACATATGAAATTGAAGCATCCAAGGAACACTGTACTTTTATGGTTCAACTTCTTACCCGCTATGGTAAACTA GATGAGGCTCAAAGATTTTTAGAAATGAGTCCTTCCTTGTAG
Protein sequence (LotjaGi3g1v0069000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFCVHHLIVVAYPCSKSSNQMQTSVSTSASLSLPLPPHSFPPIPNTFPLSNFKPLSLSSQQQKEPLPSPSTPPHTKPPH PNDPSSLIQLHFKRGNVDLARQVFEESPRRSVSAWNAMISGLAHNGFPREALEYVRLMLEEGKRPNWITMMVILPICAKL RTLKQGKEVHAYALKRRFLPHVTMVSSLMVMYSKCGVIGYSIRLFDGMEKKNVILWTAMIDSCVENGFLNEALAVMRSMQ LTRQRADTVTLTRMLCVCGELRRVKLGKEVHGQVLKLGFASVHYVAAELINMYGACGVFDNAKLVFGAVPDKGSMTWTAL IRAYGYKEWYREAIDLFDLMMSNGCSPNTFTFEAVLSICDRAGFVEDAFRFFDLMSTYEIEASKEHCTFMVQLLTRYGKL DEAQRFLEMSPSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| MobiDBLite | 59 | 86 | 28 | - | – | |
| MobiDBLite | 67 | 81 | 15 | - | – | |
| ProSiteProfiles | 80 | 110 | 31 | 5.612 | ||
| Gene3D | 84 | 176 | 93 | 2.3E-15 | ||
| PANTHER | 84 | 168 | 85 | 2.2E-64 | – | |
| Pfam | 85 | 110 | 26 | 0.46 | ||
| ProSiteProfiles | 111 | 145 | 35 | 11.411 | ||
| TIGRFAM | 114 | 147 | 34 | 1.6E-7 | ||
| Pfam | 114 | 142 | 29 | 4.7E-7 | ||
| ProSiteProfiles | 146 | 180 | 35 | 5.634 | ||
| PANTHER | 149 | 273 | 125 | 2.2E-64 | – | |
| ProSiteProfiles | 181 | 211 | 31 | 6.04 | ||
| Gene3D | 182 | 282 | 101 | 1.3E-15 | ||
| ProSiteProfiles | 212 | 246 | 35 | 8.769 | ||
| Pfam | 215 | 240 | 26 | 2.5E-4 | ||
| TIGRFAM | 215 | 240 | 26 | 1.9E-4 | ||
| ProSiteProfiles | 247 | 281 | 35 | 7.103 | ||
| PANTHER | 266 | 406 | 141 | 2.2E-64 | – | |
| Gene3D | 283 | 411 | 129 | 1.6E-20 | ||
| Pfam | 313 | 357 | 45 | 1.7E-9 | ||
| ProSiteProfiles | 313 | 347 | 35 | 10.939 | ||
| TIGRFAM | 316 | 349 | 34 | 2.9E-9 | ||
| ProSiteProfiles | 348 | 382 | 35 | 8.769 | ||
| ProSiteProfiles | 383 | 413 | 31 | 5.985 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0069000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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