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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0071500 |
| Transcript ID | LotjaGi3g1v0071500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi3g1v0071500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:7761246..7763697) extracted from Lotus japonicus Gifu genome v1.2.
AGGAAATCAACAAACTAACATTTCCACATTCAACACAACAATCTCTACCTCACAACTTCAGCAACCAAGCTCCACTTTTG TTTCCATAGTCAATCTTTCAAGTGAAATATATTTATCAGTTTGCATTACTAAGATGGCAGCAACCACCAACAGCCAAAAC AGTTCCCTTTTTTGCACTGCTAAAGGCGGTAGTGATCCATTAAATTGGGGTGTGGCGGCGGAGTCAATGAAGGGGAGCCA CCTTGATGAGGTCAAACGCATGGTGGCGGAGTACAGGAAGCCGGTGGTCCGGTTGGGCGGAGAGACGCTGACTATAGCTC AGGTGGCTGCCGTTGCAGCACATGACCAGCACAATGGTGTGAGCGTTGAACTGTGCGAGTCAGCCAGAGCTGGTGTCAAG GCCAGCAGTGACTGGGTGATGAATAGCATGAACAATGGCACTGACAGTTACGGTGTCACCACCGGCTTCGGTGCCACTTC CCATCGCAGAACCAAACAAGGCAATGCTTTGCAGCAAGAGCTCATCAGGTTTTTGAATGCCGGAATATTTGGCAATGGTA CCGAATCAAGCCACACATTGCCACAGCCTGCAACTAGAGCAGCAATGCTAGTGAGGATCAACACTCTTCTCCAAGGGTAC TCAGGCATTAGATTTGAGATCCTTGAAGCCATCACCAAGCTCCTAAACAACAATATCACACCATGTTTACCACTTCGTGG TACCGTCACAGCTTCTGGTGATTTGGTCCCACTATCATACATTGCTGGACTGCTTACTGGCAGACCAAACTCCAAAGCTG TTGGACCCTCTGGAGAGGTACTTAATGCCAAGGAAGCTTTCGAATTGGCTAGCATCGATTCAGGATTCTTCGAACTGCAG CCTAAGGAAGGGCTTGCCCTTGTTAATGGCACTGCTGTTGGTTCTGGCTTGGCTTCTATTGTTCTCTTTGAGGCTAACAT ATTGGCTGTGCTGTCTGAAGTCTTATCAGCAATTTTTGCCGAAGTGATGCAAGGAAAACCTGAATTTACCGACCATTTGA CACACAAGCTTAAGCACCACCCTGGACAAATTGAGGCTGCTGCTATCATGGAGCACATTTTGGATGGAAGTTCCTACATC AAAGCAGCAAAGAAGTTGCACGAGATGGATCCCTTGCAAAAGCCAAAACAAGATCGATATGCACTTAGAACTTCACCTCA GTGGCTTGGTCCTCTGATTGAGGTGATTCGATTCTCAACCAAGTCGATCGAGAGAGAGATTAACTCCGTGAATGACAACC CTTTGATTGATGTTTCAAGAAACAAGGCCTTACATGGTGGTAATTTCCAAGGAACCCCAATTGGAGTTTCCATGGACAAC ACACGACTAGCTCTTGCAGCAATTGGCAAACTCATGTTTGCTCAGTTCACTGAGCTTGTCGATGATCATTACAATAATGG GTTGCCTTCAAATCTCACTGCTAGTAGAAATCCTAGCTTGGATTATGGTCTCAAGGGAGCTGAAATTGCCATGGCTTCTT ATTGCTCCGAACTCCAATATCTTGCGAATCCAGTCACAACCCATGTTCAAAGTGCTGAGCAGCACAACCAAGATGTGAAC TCCTTGGGTTTGATTTCTTCTAGAAAAACAAACGAAGCCATTGAGATCCTTAAGCTCATGTCATCCACATTCTTGATTGC ACTTTGCCAAGCAATTGATTTGAGGCATTTGGAGGAGAACTTGAGATACTCAGTGAAGAACACCGTAAGCCAGGTTGCGA AGAGGACTCTTACCACAAGTGTCAGCGGAGAACTCCATCCTTCAAGATTTTGTGAAAAAGATTTGCTGAAAGTGGTTGAT AGGGAGGATGTATTTGCCTATATTGATGACCCCTGCAGTGCTACATACCCATTGATGCAAAAACTAAGGCAAGTACTTGT GGATCATGCATTAGTAAATGCAGAGAACGAGAAGAACCAGAACACGTCAATCTTTCAAAAGATTTCAACTTTTGAAGATG AGTTAAAGAGTCTCTTGCCAAAGGAGGTTGAAAGTGCAAGGAATGCATATGAGAGTGGCAATCCAGCAATTCCAAACAAG ATCAATGAATGCAGATCTTATCCACTATACAAGTTTGTGAGAGAGGAGTTGGGAACTGAGTTGCTAACTGGAGAAAAGGT CAGGTCACCAGGTGAGGAGTGTGACAAACTGTTCACAGCGATATGTCAGGGTAAAATAATTGATCCTCTTCTGGAATGCC TTGGGGAGTGGAACGGTGCCCCTCTTCCAATATGTTAACTTTACCAGTTATTTTTGTGTATGATTTCTTTGTATTTATGT AAGTGTAACATTGATCATTTGTTTTATCAAGCCTTGAGCAAAATAATAGGGAAAACTTCATCTCACATTACAACATTTTT ATCAAGCCTTGATATCTTTTCTCAATATACTAGTTCTATTTAGATGGGTGCA
CDS sequence (LotjaGi3g1v0071500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCAACCACCAACAGCCAAAACAGTTCCCTTTTTTGCACTGCTAAAGGCGGTAGTGATCCATTAAATTGGGGTGT GGCGGCGGAGTCAATGAAGGGGAGCCACCTTGATGAGGTCAAACGCATGGTGGCGGAGTACAGGAAGCCGGTGGTCCGGT TGGGCGGAGAGACGCTGACTATAGCTCAGGTGGCTGCCGTTGCAGCACATGACCAGCACAATGGTGTGAGCGTTGAACTG TGCGAGTCAGCCAGAGCTGGTGTCAAGGCCAGCAGTGACTGGGTGATGAATAGCATGAACAATGGCACTGACAGTTACGG TGTCACCACCGGCTTCGGTGCCACTTCCCATCGCAGAACCAAACAAGGCAATGCTTTGCAGCAAGAGCTCATCAGGTTTT TGAATGCCGGAATATTTGGCAATGGTACCGAATCAAGCCACACATTGCCACAGCCTGCAACTAGAGCAGCAATGCTAGTG AGGATCAACACTCTTCTCCAAGGGTACTCAGGCATTAGATTTGAGATCCTTGAAGCCATCACCAAGCTCCTAAACAACAA TATCACACCATGTTTACCACTTCGTGGTACCGTCACAGCTTCTGGTGATTTGGTCCCACTATCATACATTGCTGGACTGC TTACTGGCAGACCAAACTCCAAAGCTGTTGGACCCTCTGGAGAGGTACTTAATGCCAAGGAAGCTTTCGAATTGGCTAGC ATCGATTCAGGATTCTTCGAACTGCAGCCTAAGGAAGGGCTTGCCCTTGTTAATGGCACTGCTGTTGGTTCTGGCTTGGC TTCTATTGTTCTCTTTGAGGCTAACATATTGGCTGTGCTGTCTGAAGTCTTATCAGCAATTTTTGCCGAAGTGATGCAAG GAAAACCTGAATTTACCGACCATTTGACACACAAGCTTAAGCACCACCCTGGACAAATTGAGGCTGCTGCTATCATGGAG CACATTTTGGATGGAAGTTCCTACATCAAAGCAGCAAAGAAGTTGCACGAGATGGATCCCTTGCAAAAGCCAAAACAAGA TCGATATGCACTTAGAACTTCACCTCAGTGGCTTGGTCCTCTGATTGAGGTGATTCGATTCTCAACCAAGTCGATCGAGA GAGAGATTAACTCCGTGAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCCTTACATGGTGGTAATTTCCAAGGA ACCCCAATTGGAGTTTCCATGGACAACACACGACTAGCTCTTGCAGCAATTGGCAAACTCATGTTTGCTCAGTTCACTGA GCTTGTCGATGATCATTACAATAATGGGTTGCCTTCAAATCTCACTGCTAGTAGAAATCCTAGCTTGGATTATGGTCTCA AGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCCGAACTCCAATATCTTGCGAATCCAGTCACAACCCATGTTCAAAGT GCTGAGCAGCACAACCAAGATGTGAACTCCTTGGGTTTGATTTCTTCTAGAAAAACAAACGAAGCCATTGAGATCCTTAA GCTCATGTCATCCACATTCTTGATTGCACTTTGCCAAGCAATTGATTTGAGGCATTTGGAGGAGAACTTGAGATACTCAG TGAAGAACACCGTAAGCCAGGTTGCGAAGAGGACTCTTACCACAAGTGTCAGCGGAGAACTCCATCCTTCAAGATTTTGT GAAAAAGATTTGCTGAAAGTGGTTGATAGGGAGGATGTATTTGCCTATATTGATGACCCCTGCAGTGCTACATACCCATT GATGCAAAAACTAAGGCAAGTACTTGTGGATCATGCATTAGTAAATGCAGAGAACGAGAAGAACCAGAACACGTCAATCT TTCAAAAGATTTCAACTTTTGAAGATGAGTTAAAGAGTCTCTTGCCAAAGGAGGTTGAAAGTGCAAGGAATGCATATGAG AGTGGCAATCCAGCAATTCCAAACAAGATCAATGAATGCAGATCTTATCCACTATACAAGTTTGTGAGAGAGGAGTTGGG AACTGAGTTGCTAACTGGAGAAAAGGTCAGGTCACCAGGTGAGGAGTGTGACAAACTGTTCACAGCGATATGTCAGGGTA AAATAATTGATCCTCTTCTGGAATGCCTTGGGGAGTGGAACGGTGCCCCTCTTCCAATATGTTAA
Protein sequence (LotjaGi3g1v0071500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATTNSQNSSLFCTAKGGSDPLNWGVAAESMKGSHLDEVKRMVAEYRKPVVRLGGETLTIAQVAAVAAHDQHNGVSVEL CESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKQGNALQQELIRFLNAGIFGNGTESSHTLPQPATRAAMLV RINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFELAS IDSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIME HILDGSSYIKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQG TPIGVSMDNTRLALAAIGKLMFAQFTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTHVQS AEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLRYSVKNTVSQVAKRTLTTSVSGELHPSRFC EKDLLKVVDREDVFAYIDDPCSATYPLMQKLRQVLVDHALVNAENEKNQNTSIFQKISTFEDELKSLLPKEVESARNAYE SGNPAIPNKINECRSYPLYKFVREELGTELLTGEKVRSPGEECDKLFTAICQGKIIDPLLECLGEWNGAPLPIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 714 | 707 | 0.0 | – | |
| PANTHER | 8 | 714 | 707 | 0.0 | ||
| Gene3D | 20 | 260 | 241 | 3.2E-97 | ||
| SUPERFAMILY | 21 | 714 | 694 | 5.34E-262 | ||
| TIGRFAM | 21 | 703 | 683 | 0.0 | ||
| CDD | 57 | 524 | 468 | 0.0 | ||
| Pfam | 59 | 528 | 470 | 3.4E-152 | ||
| ProSitePatterns | 196 | 212 | 17 | - | ||
| Gene3D | 261 | 703 | 443 | 1.1E-218 | – | |
| Gene3D | 527 | 641 | 115 | 1.1E-218 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | L-phenylalanine catabolic process | The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. | ||
| Molecular function | Ammonia-lyase activity | Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate. |
Expression pattern of LotjaGi3g1v0071500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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