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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0075900 |
| Transcript ID | LotjaGi3g1v0075900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein, putative; TAIR: AT5G17200.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720; TrEMBL-Plants: tr|A0A072TLD8|A0A072TLD8_MEDTR Polygalacturonase; Found in the gene: LotjaGi3g1v0075900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8310996..8314885) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTCCTAAAGAAATTCAGAAAGAAAAATTTCTTCGTTTAATGATTTCATTCTTATTAAATATGAAGAGCTTAATCACT GGCATTTTACTTCTTGGTTTTATTTCATCCTGTGTATGCCAAAACACTATTTATAATGTGATGGACTTTGGTGCTCGTGG CAATGGCAAATTTGATGATTCACATGTATGTGTTTCTATTTTGTCTTTCTGATTTTTTACTTCCTCTGAATCTTGGACGT TTTTATTCACTTTCATCTTTTACTTTTTGTTTCAATTGAAAAATGTCCTATTATTTTCATTTTATTTTCTAGTTTATAAT GTTAAACCTAAAATAATAAAAAGAATGAAAGATGTTAGTTTTTAATATTTTTTATACAAATTTTATAACCAAAAAAGTTT ACAATTACAATAAAACACGAAAAAGAATGAAAAATAAACAAACTAGAGTTATGATTTTTATTTAATAGAAGATTTCATAA ATTATTTTACATTGTGATCTTTAAAAAAATATTTTCATTACGATTTTCTTTGGCAGGCATTTTTGAGTGCATGGCATACA ACGTGTAGGACTTCAGGGACAACAACTCTAGTTATACCAGCAGGAAAAACGTTCCTTGTGACCAACACAGTTACGCTAAC AGGTCCTTGCATGAGCACAAGAATTAACATTGAGGTATAGCTAATATTTAACATGGGGATTGGGGTGCTGTTAATTTTTT TTTCAAGTCATATATGATTTTATTACATTAAATTAAATTAATTATGGGGATTGAGGTACTGTTGATTTTATTGTCCCCGA ATGATAGCTCAAGTGGTAAGAGCTAGAAGACATCTGGGTTGGTGGGGAAGGTCCAATGATCAATCCCTGGAGGGTGCATT TTATCTTTCCAATGTACCAAAAAAAAAAATTAAATTAATTATGGTTGGTTAATTAGTTTAGACTAATCAGTAACATATTT GACTCATATTAATGAGCTGATAACACTAATTAAAGGGAGATTTTTTAATAAAATAAATGGATAATTTATGTAATTACTTA TTGACTTAGGCTTAGTTTGGGAGTTTTTTGAGAGAGGAAAGGGGAAGGCTTTTAGGGGAATGGAAGGGAATGGGAGAAAA AAATAGAGAAAAGTTATGGAGGGTTTAAAGGAAATCAAACTCATTACTGCCTAGTGAAAAAAATCTATAATAAGGGGCGA ACTTCTCATAAATCTCTATTAATTGTCCCTTCCTCCTCTCTATATCAAACTTTCAAATAAATTCTTGGAAGAAATTATTA ATTAAAAAATATAATGGCATACAATAAATAAATGTCTATCAAAAGTCAAAACTTCTGAACGCAATATAAACATATAAATG ACTTTTTTGTGTTTTTCCTCCACCCTTGCAGATTCAAGGGGAAATTGTTGCACCTTCTTTTGATGAATGGGGGCCTGCTG ATAAATCCAAATGGATTTCAATTTATTATGTCAACCATCTCACAATCAATGGCGCCGGAGGGAAAATCGATGGCTTGGGT TTTACATGGTGGGAAAGATGCAGAAATTGTTTCCGACCCAGAGTATGATAACTCATCCTTTATTTTTGTGATTGTTAATT AATTTTTTAAATTACTTTAAAACTATACTCCTACTTTCACAAGATACCTAAACAACATGTTGATTAATAGAGGAAGACAT TTTGACCATCCACTCATTTAGATTTGACTGTCCACTCATTTTGTATTAGTCATTTATAACTATTAACATTATTTAAAGAA AATAAGAAATTATTTATAATTCAATTTTTTTACAAGCTACCTTTTATATTAAAGTTTGAAATTTCTTAATAAATAAAAGA TTGGAACAAACTAATCCTTTTGCGGGTGATACAGACCTTGAGTTTCCATGGTTGCAATGATCTTACTGTAAGCCATCTGC ACCTCGTTAATAGTCCTGGAGGTCACATAGCTCTAGATGGTTCCATTGGTGCAAGTTTCTCTCATATTCACATTCAAGCT CCTGCTAACAGCCCCAACACTGATGGCTTTGACATTGCTAATTCTAGAAATATCTTGATACGAAATTCCAACATAGAAGC TGGTAACCCAAATTTTCAACTCATTAAATAAAATCACAACATGTACAATTTTATCATGCACTAACTTCCTAATTAACAGG TGATGATTGTATTGCCATTAATGGTGGTACATCTTTCATCAATGTTACTCGAGTTGCTTGTGGACCAGGTCATGGGATAA GGTGTGTATCTTGTAAAGTACAGCATTACCTTTATTTTTGTTTTATTTCTTATTTTTAAAGAATTATATAAGAAATAGTA TTCAACATAAAATAATTACTTTAATTGTTTCCTACATAAATATGACGAAATGGGAAATAAAGAAATGTAAATGCAAATGA TCATTTAAAAACTACGAAAATGAAACTAAAAAACATTTTGTCAATTTAAAAAGGTCCTTAGTTTCTTTGAATTTAAATTG GAGTTTATTATATTCTTATAGTCAAATTAGAGTCAAGTGATATCTTTAATTTCTTATTTTACTTAAAAATATTGATTAAA TATTTAATAAATTAAATTGCATGTGACATTCAATTGTAAAAAACTTCCTTGATTTATTATTAATATTTATATCATCGTAA TTTCTTATCCTTGTGTATGATTAATCAGCATTGGCAGTCTTGGAAGAGGTGGTGCTCATGAGATCGTCGAAGAGGTTTAT GTATATGACTGCATTTTCACGGGGACTTCAAATGCAGCAAGAATCAAAACAGTTTCAGTAAGTAACAAAAATATGACTGG GAAATGGAATTGCACACTTTTGTAAATAATACTGACTACATGCATTTTCACATTCTATTTAACATTTTTTTTTGTATTAT TGATTGATATTGGAAGAATAATTACATATATTTCGTTACGTACAAATTGATCATTTTGAATAAAAAGTATGTTGATGTTT TCAAAAATTAAAGCATGATTTTAAGAGAGTATTGGCCTTACTCTCTTAGTACATACCAAATTTGAGATAAAAACAAATGG GTATGTACTAAGAGCCGAATAAAAGACACAAATTTGAGATAAAAATAAAATCATAAATAGAACGGAGAATTTATGGGTGA TAATATAATATGTGTGGAAATTAAAACCCAAAAAAAAAAGGATTACTTCCTTTATTATTCCTCAATTTTGATTTTAGTAT ATTGTAATTCTTTTGTAGGGTGGATCGGGTTATGCAAGGAAGATAACTTTCGAGAAAATAACACTTATAAGGGCCGGCAA CCCAATAATTATAGACCAGCACTACGGTCTAAATCCAACGGTACCCATTTATGATTTTAACTGCTTGGGGTTCCTGGACT CTTTTGACCCTTTGCTTGCCTGTACCTTCTCTTTATTGTTGTTATATTGTTGTTATATAATTCAGTTTTCTAAAAAAAAT AGTTAATTATATGTTTTTATTTTGAATTTGACCTAATTTTTAGGCGGATACATCAGTGGTGGTCAGTGATGTGACATATC GTGGAATCCATGGAACTTCTACGGCTGATTTAGCTATCAAGTTAGATTGCTCCACATCGGGATGTTTCAACATTGTGTTG GATCAAATTAACATTGTCTCTGCCATACCAGGAAGAAAGACTTATGCTTCTTGCCACAATGCCCATGGTACAGTTAGATC TTCTATTCCAAGTGTCCCTTGCTTGTTGAGGTGAATTTATACGTTACCCTCAAATACCAAAAGCTATGTATTCAAATTAT AAAGAGTGTATTCAAATTATAAAGAGTGTACCATTAATAAAGGTTTGAACCCAATGAATTTTAAGTGCACTCTATCTCTC CATCTCTCAAGTGTAACATCTCGATTTTTCATCTACTTCGTCAATGCGTA
CDS sequence (LotjaGi3g1v0075900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTCATTCTTATTAAATATGAAGAGCTTAATCACTGGCATTTTACTTCTTGGTTTTATTTCATCCTGTGTATGCCA AAACACTATTTATAATGTGATGGACTTTGGTGCTCGTGGCAATGGCAAATTTGATGATTCACATGCATTTTTGAGTGCAT GGCATACAACGTGTAGGACTTCAGGGACAACAACTCTAGTTATACCAGCAGGAAAAACGTTCCTTGTGACCAACACAGTT ACGCTAACAGGTCCTTGCATGAGCACAAGAATTAACATTGAGATTCAAGGGGAAATTGTTGCACCTTCTTTTGATGAATG GGGGCCTGCTGATAAATCCAAATGGATTTCAATTTATTATGTCAACCATCTCACAATCAATGGCGCCGGAGGGAAAATCG ATGGCTTGGGTTTTACATGGTGGGAAAGATGCAGAAATTGTTTCCGACCCAGAACCTTGAGTTTCCATGGTTGCAATGAT CTTACTGTAAGCCATCTGCACCTCGTTAATAGTCCTGGAGGTCACATAGCTCTAGATGGTTCCATTGGTGCAAGTTTCTC TCATATTCACATTCAAGCTCCTGCTAACAGCCCCAACACTGATGGCTTTGACATTGCTAATTCTAGAAATATCTTGATAC GAAATTCCAACATAGAAGCTGGTGATGATTGTATTGCCATTAATGGTGGTACATCTTTCATCAATGTTACTCGAGTTGCT TGTGGACCAGGTCATGGGATAAGCATTGGCAGTCTTGGAAGAGGTGGTGCTCATGAGATCGTCGAAGAGGTTTATGTATA TGACTGCATTTTCACGGGGACTTCAAATGCAGCAAGAATCAAAACAGTTTCAGGTGGATCGGGTTATGCAAGGAAGATAA CTTTCGAGAAAATAACACTTATAAGGGCCGGCAACCCAATAATTATAGACCAGCACTACGGTCTAAATCCAACGGCGGAT ACATCAGTGGTGGTCAGTGATGTGACATATCGTGGAATCCATGGAACTTCTACGGCTGATTTAGCTATCAAGTTAGATTG CTCCACATCGGGATGTTTCAACATTGTGTTGGATCAAATTAACATTGTCTCTGCCATACCAGGAAGAAAGACTTATGCTT CTTGCCACAATGCCCATGGTACAGTTAGATCTTCTATTCCAAGTGTCCCTTGCTTGTTGAGGTGA
Protein sequence (LotjaGi3g1v0075900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISFLLNMKSLITGILLLGFISSCVCQNTIYNVMDFGARGNGKFDDSHAFLSAWHTTCRTSGTTTLVIPAGKTFLVTNTV TLTGPCMSTRINIEIQGEIVAPSFDEWGPADKSKWISIYYVNHLTINGAGGKIDGLGFTWWERCRNCFRPRTLSFHGCND LTVSHLHLVNSPGGHIALDGSIGASFSHIHIQAPANSPNTDGFDIANSRNILIRNSNIEAGDDCIAINGGTSFINVTRVA CGPGHGISIGSLGRGGAHEIVEEVYVYDCIFTGTSNAARIKTVSGGSGYARKITFEKITLIRAGNPIIIDQHYGLNPTAD TSVVVSDVTYRGIHGTSTADLAIKLDCSTSGCFNIVLDQINIVSAIPGRKTYASCHNAHGTVRSSIPSVPCLLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| SUPERFAMILY | 15 | 393 | 379 | 7.11E-106 | ||
| PANTHER | 16 | 391 | 376 | 1.5E-147 | – | |
| PANTHER | 16 | 391 | 376 | 1.5E-147 | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Gene3D | 25 | 389 | 365 | 2.8E-107 | ||
| Phobius | 27 | 394 | 368 | - | – | |
| Pfam | 58 | 379 | 322 | 3.9E-74 | ||
| SMART | 181 | 207 | 27 | 1500.0 | ||
| SMART | 208 | 229 | 22 | 8.6 | ||
| ProSitePatterns | 238 | 251 | 14 | - | ||
| SMART | 261 | 282 | 22 | 1500.0 | ||
| SMART | 290 | 311 | 22 | 3900.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0075900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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