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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0076600 |
| Transcript ID | LotjaGi3g1v0076600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT5G54200.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9XSC3|WDR44_BOVIN WD repeat-containing protein 44; TrEMBL-Plants: tr|A0A072VAE7|A0A072VAE7_MEDTR Transducin/WD-like repeat-protein; Found in the gene: LotjaGi3g1v0076600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8383939..8389169) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAATGCCCGCTATTCCCGACCACCGCCGTGAACCATGAGCAGAGCCACCGTTGGGGACGACGGCGAAGAAGAAACT GAGTGCTTCTACGAATCCCACGACCGCTTGCTCTCTCTTTCTTCCTCTTGCTCTTGCTCCAACTCCAACTCTGATAACGA AGAACAAGATAACACCACCACCGCCACCGCCACCGCCACCAATTGTAATTACAATTTCGCCCTCAACAGTTACGACGTAT GGATCTCTCAACCCTCCTCCGTCGAAGAACGCCGCTCCCGCCTCCTCCAAAACATGGGCCTCTCCTCCGACCCTTCCCTC TCCCGCCGCTCCAACCTCAATTCCATCTTCCGATCCAAATCCGACGGTGGCGCCACCGCCAACAATATCAACAACCTGTC TTCTTCTTCTTCTTCTTCTTCTTCTTTTCATTCTGCTACCTCATCCTCCTCTGTGAATAATGGTATCAGGGGGAACGGCG GCGGCGGTGGTGGTGGCTCCCCGGGGAAGCCGCCGTCCGGGAAGAATTGCCGGAGGAGTCGGTCGTCGTCGGATTCTGGT GATGCGGCGGAGAAAGGGTGGGAGCGGGCTTGTACGATAAGAGATCTTGACAACGGGAAGGAGTTTGTGGTGAAGGAGGT GACGGAGGATGGGGTGTTGGATGAGGTGAAGGAGGTTGGGACTGGGAGGCAGCTTACTATGGAGGAGTTTGAGATGACGG TGGGGCACTCGCCGATCGTGCAGGAGTTGATGCGGCGGCAGAATGTGGAGGAGAATAAGGACGGTGTTGATTCCGGTGGA GGGAGTTCTAATGGTGGTGGAAGTGGTAGTGGTCATGGTCATGGTAATGGTGGCGGTCATGGTAATGGGAGTAAGGTGAA GAAGAAAGGAGGGGGTTGGTTGAAGAGTATTAAGAGCGTTGCGAGCTCGATGGCGGGGCATAAGGAGAGGAGGAGCAGCG ATGAGAGGGATACGTCGTCGGAGAAAGGCGGGAGGAGGTCGAGCTCCGCCACGGATGACAGCCAGGATGGTACATTTCAT GGACCGGAGAGGTTGAGGGTGAGGCAGTATGGGAAATCATGTAAGGAGGTAACTGCATTGTACAAGAGCCAAGAGATTCA GGCTCACACTGGATCCATTTGGAGCATCAAGTTCAGTTTGGATGGGAAGTACCTTGCTAGTGCTGGTGAGGATTGTGTGA TCCATGTTTGGCAGGTTGTGGAATCTGAGAGGAAAGGGGAGCTGCTGCTCATGGAGAAACCGGAGGATGTGAGTGTCAAT ATGCTGTTTCTTGTCAACGGGTCGCCGGAGCCGGCTGCGGCCCTGCTGTCTCCTGGGTTGGACATCAACCCTGAGAGGAA GAGGAAGGGGAGGTCATCAGTTAGTAGAAAGTCAATGAGCTTGGACCAGTTGGTTGTTCCGGAGAACGTGTTTGGACTCA CTGAAAAACCCATTTGCTCCTTTCAGGGCCATCTCCATGATGTGCTTGATCTGTCTTGGTCCAAGTCTCAGGTTAGATTC TCTCTTTTAAATGGGTCTTCTTGTGCTGTTATTCCGTCCGGTGTGATCAATCCCTGGTATATTTATAAAGTTGGCACCAG CTGATCTTATGTTGGATATAAGTTGTTGTTACGGGTAGTTCCTACTAAATGATGGATGAATGTGGTTTTACTGAGCAGTT TGAGTAAGTTTTTCTACTTTGTTTCTATAGCAACTAATGCAATATTCATGATATAATTGGTTGGAACGAGATAGTTTTCG GGTGGCTGAATAGGCACAAAGAAAAAACATTGGTTTCGAATTGCAGTAAAATATATTTCGTGTTAAGAATATCCATTTCT CATTTGTAGTCTACGCTACGACTAATGTTATTTCAGGGTGATGCTGGGAGCCTGGGACTATTTTGTTTATTGTTTTCTGG TTATTATGTTGTGGAAAATATTTATGCAAAGTGGACAAGCTACTAGGCTGTTGCTGGTTTTGGTTACTTTAAGGTTGAGT TATTGTAGTCTTAAAATGTGTTATAGGAACTAGTAAAAAAAATCTGTTTGAGTGTGAAGGTTTCTGGATCTTTTCTTTTT TCCTACTCCCTGTCTGATCCAAATTTGTGTTTATGAATTTTTTGTGATAGGCCTAAAATTGTTTATTTTTCCTACAGAGT TAATTTGTTATTCTAGGCCTTCCTTCCTTCTTGGAAGGAAGACATTAAAAAAATGATGAGTTTAAGGAGTTAACATACAG ACAACAGGATGGCAGTATGTTTTAAGATTTATGGTTATATCCAATTTATGGTTAAATACTCTATGGTTATTTCCAATTTT TCCAGCAATTACTATAGTGAACGTTGATAAAGAGATAGTTTTGCTGGGCTCTAAGGAAAAGGGAACTAAAGTTTACTACT TGAAAGGCAGACATAATGTTTTCAGGTCTGTAACTTATTAGGAGTTAGGATGCTTGTTTTTAGTTTTTACTTAGGAGTTA GGAGCACTAATTAGATGACTTGTTGATGTCTTTATGATGAAAGGTTGAGAGATTATCTTGTTATCAGCTTACTTTCAGGT CAATTTATCATTATTCCCTATGTAAATTTTAGCAGTGCTTGCTAAACCTGAAAAAATAGATAGTTTTTGAACTGATTTTT TAGTTTACTAAACTTTCCCTATTGTCTGCATAGGAGTAGAAGCATGCCTAAGCATATTTTAACATCTCTACTATATACAT TCCTTATAAATAGGGCAACGCTGGTGGGCTTTATTGAGCACGCTTCAGAGTGACTAAATATGAAGAATGAATTGTCATTA TCCATATTTTTGCAAGCTCAGATCACTTTGAAAAGCTTTGGGAGGGTTTTTTTTTTTCTTTCTGAGGGGAGGGGGGCCTT TTTATTCATCCAAAATTTTATTGATTAATGTCTTTGCGTGATATTTAAAACTATGTGATTAAAGCAGTGCATGTGTTTTT ATTTTGAAGCATCCTTTGTAATATTTTTAGTCCCTTTTTTGTACAGCACTTGCTTTCATCTTCAATGGACAAAACAGTGC GGCTGTGGCATTTGTCTAGCAAGACTTGTTTGAAAATATTTTCACACAGTGACTATGGTGAGTAAATGCAACTATAACAT CTTTGCTCTCTCTTAATCTCGTAGCATGTTTGGATCAACTTCTATTTTATCATAACCAATTCTAGCACACTCCTATCAAC AACAACAAAAAAATCAATTCTAGCACACACAAGCTTCTCCCTAGAATTGATTTTGGCTTTAGAATCAATTGTAGAAAGAT TTCTAAACATGCACTAAATCATATATAGGCCACTGCTTTGGACACAAAATATTCTTTTGTTAAATATGACTAAATGGCAG AGCACCCATTCTTTTATGTTATTAAAATTTATTTATTCTGCCTCTTCCCAACTAAAAATTGAATCAGATTCCATATCAAT CATGTTCCTCCAATCTAGCCCATCTTTGAGGATGGGCATTATGGAACGCAGGAACCGTTTTATGAAAATACTTGTCTTTG CTGCACATAGGAATAATTATACAAGACTTTTTTTATATCCAATAGGATGGTTAACTTTAGAATGAAGTCCCTTTTAGTTC TTTGCTAATTATACCCTTTGCTTCAATCTACTTTTTTTCTGGCACAGTAACTTGCATCCAGTTTAATCCTGTTGATGATA GCTACTTCATTAGTGGATCTTTAGATGCTAAGGTTCGCATTTGGAGCATTCCTGATCGACAAGTTGTTGATTGGATTGAT CTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGTTGGTACAAGATTAATGTGCTTTGAATTCAACAC TTGAAGTTCGATTTTTAAGTGTAAACTCAGTTAAATTTGCGATGCAGGGTGCACTAGTTGGTTCATACAAGGGTAGCTGC CACTTATATGATACGTCCGGTACTGTTCTAGTCTTTTTCCCCTAATAACTGTGTTTATCCATCTACAATCCATTCTGATG ATTGTGGGGTCACTGATTATCATAATGTTTTTATATTTTGTTCAGAAAATAAATTGCAACTGAAAAGCCAGATCAATCTG CAGAACAAGAAGAAGAAATCCCATCACAAAAAAATTACCGGTTTCCAGGTAATATAAGGATTTACTCCAGTTCTATTTTA TATTTATGTGTGCCCATCTAAAAGGAGGGTATTTGACCAATTGACCATAAATGATTTGCTTTGACTAAGTCACAATGCTT ATGCTTGTCTTCCTTATTGAATTTTATGAACAGTTTGCCCCAGGAAGTTCGTCAGAAGTACTTATCACATCTGCTGATTC ACGAATTCGGGTTGTTGATGGTGTTGATCTGGTTCACAAGTTTAAAGGTATGTAATACTAATTATATATCAAGTAATTTA GTTAAAAGATAATATAGCAAGTTTATTTGGTCAAAGCAATCCTCACTACTTTTTTCCATGTTTTATCGGAGTGTGGGGAG TGTTCTCCTAATGCTGAAAAAAAGATATATTGTAAATTTATGTGGACGAATAAAAATAAAGATGTGGTCTTGTTAGCTCT GCAACTTTGCTCAAATGGAAACAGGTTTCAGTATATTTTCTTGCTGATGAAACTGATGCAAATTTTGTGCAGGCTTTCGA AATGCAACTAGCCAGATTTCAGCCTCCCTCACAGCTAATGGTAAATACATCGTCGCAGCGAGTGAGGATTCCCATGTATA CATCTGGAAAAATGAAGCTGATTGCAGGCCTAACAGGAGTAAAGGCGTCACTGTCACAAGCTCATACGAACATTTTCACT GTAAAGATGTGTCGGTGGCCATTCCCTGGCCTGGAATGGGTGATGCATGGGACATGCATGATACATTCTCAGCAGAACAG CCTGAGCTCGATAGCAATGCTGACGAAGTTGTATCAACCAATCATCCTCCTACCCCTGTAGAGGAAAACTTCGGTACCGA GGGTTCACGATCTGCTTCAGGTTACCATAATAGTCCACGCCACGCAACCATCGCAAGCGCGACGAACAGTTACTTTTTCG ATAGAATTTCTGCAACATGGCCTGAAGAAAAACTTGTTCTAGCTGCGAGAAATCGAAGCCCTCGTGTCAGCGTGGATTTC TCTAACGGGGTAAGTCAAAAAATGTCAGCGTGGGGTATGGTGATTGTAACTGCTGGCCTTCGAGGCGAAATCAGAACTTT TCAGAATTTTGGATTACCACTTCGAATATAA
CDS sequence (LotjaGi3g1v0076600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAGGAGAATAAGGACGCATGGTCATGGTAATGGTGGCGGTCATGGTAATGGGAGTAAGGTGAAGAAGAAAGGAGG GGGTTGGTTGAAGAGTATTAAGAGCGTTGCGAGCTCGATGGCGGGGCATAAGGAGAGGAGGAGCAGCGATGAGAGGGATA CGTCGTCGGAGAAAGGCGGGAGGAGGTCGAGCTCCGCCACGGATGACAGCCAGGATGGTACATTTCATGGACCGGAGAGG TTGAGGGTGAGGCAGTATGGGAAATCATGTAAGGAGGTAACTGCATTGTACAAGAGCCAAGAGATTCAGGCTCACACTGG ATCCATTTGGAGCATCAAGTTCAGTTTGGATGGGAAGTACCTTGCTAGTGCTGGTGAGGATTGTGTGATCCATGTTTGGC AGGTTGTGGAATCTGAGAGGAAAGGGGAGCTGCTGCTCATGGAGAAACCGGAGGATGTGAGTGTCAATATGCTGTTTCTT GTCAACGGGTCGCCGGAGCCGGCTGCGGCCCTGCTGTCTCCTGGGTTGGACATCAACCCTGAGAGGAAGAGGAAGGGGAG GTCATCAGTTAGTAGAAAGTCAATGAGCTTGGACCAGTTGGTTGTTCCGGAGAACGTGTTTGGACTCACTGAAAAACCCA TTTGCTCCTTTCAGGGCCATCTCCATGATGTGCTTGATCTGTCTTGGTCCAAGTCTCAGCACTTGCTTTCATCTTCAATG GACAAAACAGTGCGGCTGTGGCATTTGTCTAGCAAGACTTGTTTGAAAATATTTTCACACAGTGACTATGTAACTTGCAT CCAGTTTAATCCTGTTGATGATAGCTACTTCATTAGTGGATCTTTAGATGCTAAGGTTCGCATTTGGAGCATTCCTGATC GACAAGTTGTTGATTGGATTGATCTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTAGTT GGTTCATACAAGGGTAGCTGCCACTTATATGATACGTCCGAAAATAAATTGCAACTGAAAAGCCAGATCAATCTGCAGAA CAAGAAGAAGAAATCCCATCACAAAAAAATTACCGGTTTCCAGTTTGCCCCAGGAAGTTCGTCAGAAGTACTTATCACAT CTGCTGATTCACGAATTCGGGTTGTTGATGGTGTTGATCTGGTTCACAAGTTTAAAGGCTTTCGAAATGCAACTAGCCAG ATTTCAGCCTCCCTCACAGCTAATGGTAAATACATCGTCGCAGCGAGTGAGGATTCCCATGTATACATCTGGAAAAATGA AGCTGATTGCAGGCCTAACAGGAGTAAAGGCGTCACTGTCACAAGCTCATACGAACATTTTCACTGTAAAGATGTGTCGG TGGCCATTCCCTGGCCTGGAATGGGTGATGCATGGGACATGCATGATACATTCTCAGCAGAACAGCCTGAGCTCGATAGC AATGCTGACGAAGTTGTATCAACCAATCATCCTCCTACCCCTGTAGAGGAAAACTTCGGTACCGAGGGTTCACGATCTGC TTCAGGTTACCATAATAGTCCACGCCACGCAACCATCGCAAGCGCGACGAACAGTTACTTTTTCGATAGAATTTCTGCAA CATGGCCTGAAGAAAAACTTGTTCTAGCTGCGAGAAATCGAAGCCCTCGTGTCAGCGTGGATTTCTCTAACGGGGTAAGT CAAAAAATGTCAGCGTGGGGTATGGTGATTGTAACTGCTGGCCTTCGAGGCGAAATCAGAACTTTTCAGAATTTTGGATT ACCACTTCGAATATAA
Protein sequence (LotjaGi3g1v0076600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRRIRTHGHGNGGGHGNGSKVKKKGGGWLKSIKSVASSMAGHKERRSSDERDTSSEKGGRRSSSATDDSQDGTFHGPER LRVRQYGKSCKEVTALYKSQEIQAHTGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLLMEKPEDVSVNMLFL VNGSPEPAAALLSPGLDINPERKRKGRSSVSRKSMSLDQLVVPENVFGLTEKPICSFQGHLHDVLDLSWSKSQHLLSSSM DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDSYFISGSLDAKVRIWSIPDRQVVDWIDLHEMVTAACYTPDGQGALV GSYKGSCHLYDTSENKLQLKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSQ ISASLTANGKYIVAASEDSHVYIWKNEADCRPNRSKGVTVTSSYEHFHCKDVSVAIPWPGMGDAWDMHDTFSAEQPELDS NADEVVSTNHPPTPVEENFGTEGSRSASGYHNSPRHATIASATNSYFFDRISATWPEEKLVLAARNRSPRVSVDFSNGVS QKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 81 | 81 | - | – | |
| PANTHER | 20 | 591 | 572 | 1.2E-276 | ||
| PANTHER | 20 | 591 | 572 | 1.2E-276 | – | |
| MobiDBLite | 40 | 65 | 26 | - | – | |
| Gene3D | 58 | 154 | 97 | 2.7E-10 | ||
| SMART | 95 | 134 | 40 | 9.4E-8 | ||
| SUPERFAMILY | 97 | 427 | 331 | 1.15E-55 | ||
| Pfam | 101 | 133 | 33 | 3.2E-5 | ||
| ProSiteProfiles | 102 | 143 | 42 | 12.948 | ||
| ProSiteProfiles | 102 | 143 | 42 | 12.077 | ||
| PRINTS | 121 | 135 | 15 | 1.4E-5 | ||
| Gene3D | 190 | 451 | 262 | 1.9E-50 | ||
| SMART | 210 | 248 | 39 | 2.0E-8 | ||
| Pfam | 212 | 247 | 36 | 3.6E-6 | ||
| ProSiteProfiles | 217 | 434 | 218 | 16.717 | ||
| ProSiteProfiles | 217 | 257 | 41 | 12.614 | ||
| PRINTS | 235 | 249 | 15 | 1.4E-5 | ||
| SMART | 251 | 290 | 40 | 4.1E-9 | ||
| Pfam | 253 | 290 | 38 | 5.6E-4 | ||
| ProSiteProfiles | 257 | 291 | 35 | 12.58 | ||
| PRINTS | 277 | 291 | 15 | 1.4E-5 | ||
| SMART | 293 | 331 | 39 | 0.81 | ||
| SMART | 344 | 383 | 40 | 7.8 | ||
| SMART | 384 | 425 | 42 | 0.47 | ||
| Pfam | 388 | 425 | 38 | 0.12 | ||
| MobiDBLite | 483 | 512 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0076600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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