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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0079400 |
| Transcript ID | LotjaGi3g1v0079400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB transcription factor; TAIR: AT4G21440.1 MYB-like 102; Swiss-Prot: sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39; TrEMBL-Plants: tr|K7M2E6|K7M2E6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0079400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8734004..8736733) extracted from Lotus japonicus Gifu genome v1.2.
CAACCTTTTCCTATATTTTCGTGTTTTCTTCTCTCTAATTTTCTGAGACACAAAATTAAGCACTCCATATTTAATTTCAT CAAAGCCCTTATTGAGAATCCCAATTTGGTGCACTTTTTCATCATGGCCAAGTCGAATTCTGGTGAAAAGAATGGAGTGA AGAAAGGTCCATGGACTCCAGAGGAAGATCAGAAACTCGTCGATTACATTCAGAAACATGGGCATGGGAAATGGAGAACC CTTCCCAAGAATGCAGGTACAAACTTTGTGCTAGGCTGCTAGCTATTTCTGGCCTTCTCATGAAAGCCACTTCAATTAAT CATTAAGAAATTTGTACATGTTTTGGAAATTTTGTGCATATGTTCGGATACACGTTGAAAAATTACAGTGAAATTAAAAT CATGGCGAATAGTCGCAATAGTTTAAAAAAATTGCTTCCTTCCATCTGATTGTACGTTTGCTCTAGTTTCTTACCAAAAA TCAAGACATACACTTGTATAAATAATTTTGGAGTCAAAATTTATGAAGTTTCTAGTAGCTTGTAAGCTTCAAAATTATTT CTGAGAAAATAAAGGTTGATGCAAACATGTTATGGTGATGAGTTTTTTTGAAAGCAGAAGGATATATAATATATATAGTG TTGAGAAATAACTCATTCTCAACATGAGTACAGTAACCTAGCTAACAGCCCAAACTGCTGATAAAACCTGCGACTGTAGT GCCTAGCCCACTAAAAAGGTCCCCATTGAAATTGAGAAAACGGTAACCAGTTCAACCAACATGATGATGAGTTTGTTTAC TTTCATTACTAATTAGTTGTTTTTCTCTTCTCATAATACACTCAAGCACACATATTCTTCTATGTACAAAGTTCCTACAC ATATATATGTATTATAGTAGCAGTTAATTATCATAAATATTCTTAATTTGTGCTTGCTTTAATTTCCATCGTTTACAAAT AATAGGACTTAAAAGATGTGGAAAGAGTTGCCGGCTTCGCTGGGCTAACTATTTGAGGCCAGATATAAAGAGGGGGAAAT TCTCTTTAGAAGAAGAAGAAGCCATCATCCAATTACACAGTGTATTGGGTAACAAGTAAGTGATAAAGCTAATATCTTTT TTCCTCATGTATGTAACAAAAAAAAAAAGTAACAAAAAAAAGTGATAAAGCCAATATGATTCATTTCAAATTTCAATACC CCCCACCCTCCTATTTTGCTTATCCGATCCTCACTTTTTGTTAGGTAGGTACATGCGTTTTCCTCATTCACTTTAAAAAT ACATTAAAAGGGAATCTTTTCTTGAAATTTCCACATATGCTATGCACAATCGCCAACTAATTCAAAGACCTCAAATTAAT TGAAGCATTGAAATCTATTTTATACTAGTTTGAATGGTACAGCTAAGAAACATTGCAAAGTCAATGGCTATCAAACTTAA TTTTCTTTTGTCACTTTATGTAGCGTGGAAATTATAGGTCATGAGGATGAAGTATTTATTCCTCCACAAATCATACTTTT ACTACTGATATTTAATACATGTTATTTATAATATGTTTCTCAACTATCAAAATTAATTTGTAAATGATTTTTTTTTTTTA ATTTGTGAATCCAATTTTTCTTAATTGATGAAACTTTTACTATATCTAAATGGAAATTTTGTGTACGTTATGCACAGATG GTCTACAATTGCTGCCAACTTGCAGGGAAGAACAGACAATGAGATCAAGAATTATTGGAACACCCACATCAAAAAAAAGC TTTTGAAGATGGGGCTTGATCCAGTGACTCACACTCCACGCCTTGATGTCCTACAATTAGCTTCCATTCTAAACTCATCT TTATACAATAATTCAGCCCAGTTTAACAACCCTGGTCTTTTTGGAATGGAAAGGGTAGTGAATCCAAGCCAGCTTCAGCT ACTAAATTTAGTCACCACTCTTCTATCATGTCAAAATACAAACCAAGATGTTTGGAATACTAATAATTACCAGCAAAATC AACTTGGTGGGAGCACACAATGGCAACATCAAACACAATGCTCCCAACCAATGCAGCTTGATAATTCTATCCATGCCTTC CAACCAAACCAGGTCAATGAAGAAAACCATTGTACTACATCTAATCCATTGCATATATTGGAACCACCCCAGCTCATGAA AACCAACTTAGAGCATCAAATATCTCCAATTGCTAGTCCTTTTAACCATCAAAACTCAATGCAAAATTTGTTGCAGTACA ATGGAGGTTTCACATCGAATCGAAAACGGCCTGAACCATCATCAGCTACACAATCTTTCTCTTCGCTTTTATGTAATAGC GAGGGAATGCCGAATTTCAATTTAAGCTCACTTTTATCTTCCACGCCTTCATCTTCTAGCCCTAGTACCTTGAATTCATC ATCTTCCACAACATTTGTCAAAGGAACCAATGAAGATGAAAGAGACACTTACGGCAACATGTTCATGTATAACATTTCAA ATGGCTTGAATGACTCTGGACTTTTGTGATTGAACTTGGTTGCAAGTTGGGCCGGCTGTAATATGAGTTTGGTTATTCAG TTTAGACTATTCCGTTTGTATTAACATGCATGAGTTTATTATTTATCAACAATACCTTTTTTTTTCCTTTTTCTAAACAT CTTTATCAACAACACCTTATTAGAGAGTTTTTTTTTGTCAAAACTTATTAGAGAGTTTTCAAAAGTAATAGGCTTAATTG CACTTTTGTT
CDS sequence (LotjaGi3g1v0079400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAGTCGAATTCTGGTGAAAAGAATGGAGTGAAGAAAGGTCCATGGACTCCAGAGGAAGATCAGAAACTCGTCGA TTACATTCAGAAACATGGGCATGGGAAATGGAGAACCCTTCCCAAGAATGCAGGACTTAAAAGATGTGGAAAGAGTTGCC GGCTTCGCTGGGCTAACTATTTGAGGCCAGATATAAAGAGGGGGAAATTCTCTTTAGAAGAAGAAGAAGCCATCATCCAA TTACACAGTGTATTGGGTAACAAATGGTCTACAATTGCTGCCAACTTGCAGGGAAGAACAGACAATGAGATCAAGAATTA TTGGAACACCCACATCAAAAAAAAGCTTTTGAAGATGGGGCTTGATCCAGTGACTCACACTCCACGCCTTGATGTCCTAC AATTAGCTTCCATTCTAAACTCATCTTTATACAATAATTCAGCCCAGTTTAACAACCCTGGTCTTTTTGGAATGGAAAGG GTAGTGAATCCAAGCCAGCTTCAGCTACTAAATTTAGTCACCACTCTTCTATCATGTCAAAATACAAACCAAGATGTTTG GAATACTAATAATTACCAGCAAAATCAACTTGGTGGGAGCACACAATGGCAACATCAAACACAATGCTCCCAACCAATGC AGCTTGATAATTCTATCCATGCCTTCCAACCAAACCAGGTCAATGAAGAAAACCATTGTACTACATCTAATCCATTGCAT ATATTGGAACCACCCCAGCTCATGAAAACCAACTTAGAGCATCAAATATCTCCAATTGCTAGTCCTTTTAACCATCAAAA CTCAATGCAAAATTTGTTGCAGTACAATGGAGGTTTCACATCGAATCGAAAACGGCCTGAACCATCATCAGCTACACAAT CTTTCTCTTCGCTTTTATGTAATAGCGAGGGAATGCCGAATTTCAATTTAAGCTCACTTTTATCTTCCACGCCTTCATCT TCTAGCCCTAGTACCTTGAATTCATCATCTTCCACAACATTTGTCAAAGGAACCAATGAAGATGAAAGAGACACTTACGG CAACATGTTCATGTATAACATTTCAAATGGCTTGAATGACTCTGGACTTTTGTGA
Protein sequence (LotjaGi3g1v0079400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKSNSGEKNGVKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGKFSLEEEEAIIQ LHSVLGNKWSTIAANLQGRTDNEIKNYWNTHIKKKLLKMGLDPVTHTPRLDVLQLASILNSSLYNNSAQFNNPGLFGMER VVNPSQLQLLNLVTTLLSCQNTNQDVWNTNNYQQNQLGGSTQWQHQTQCSQPMQLDNSIHAFQPNQVNEENHCTTSNPLH ILEPPQLMKTNLEHQISPIASPFNHQNSMQNLLQYNGGFTSNRKRPEPSSATQSFSSLLCNSEGMPNFNLSSLLSSTPSS SSPSTLNSSSSTTFVKGTNEDERDTYGNMFMYNISNGLNDSGLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 357 | 357 | 5.7E-106 | – | |
| PANTHER | 1 | 357 | 357 | 5.7E-106 | ||
| MobiDBLite | 1 | 21 | 21 | - | – | |
| ProSiteProfiles | 9 | 61 | 53 | 19.025 | ||
| SUPERFAMILY | 11 | 108 | 98 | 4.87E-31 | ||
| Gene3D | 12 | 67 | 56 | 8.8E-21 | – | |
| SMART | 13 | 63 | 51 | 3.3E-15 | ||
| Pfam | 14 | 61 | 48 | 2.5E-16 | ||
| CDD | 16 | 61 | 46 | 1.37665E-12 | ||
| ProSiteProfiles | 62 | 116 | 55 | 26.718 | ||
| SMART | 66 | 114 | 49 | 3.5E-15 | ||
| Pfam | 67 | 111 | 45 | 1.6E-13 | ||
| Gene3D | 68 | 128 | 61 | 1.3E-18 | – | |
| CDD | 69 | 112 | 44 | 2.53018E-11 | ||
| MobiDBLite | 314 | 336 | 23 | - | – | |
| MobiDBLite | 314 | 341 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0079400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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