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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0079400 |
| Transcript ID | LotjaGi3g1v0079400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB transcription factor; TAIR: AT4G21440.1 MYB-like 102; Swiss-Prot: sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4; TrEMBL-Plants: tr|K7M2E6|K7M2E6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0079400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8734127..8735115) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCAAGTCGAATTCTGGTGAAAAGAATGGAGTGAAGAAAGGTCCATGGACTCCAGAGGAAGATCAGAAACTCGTCGA TTACATTCAGAAACATGGGCATGGGAAATGGAGAACCCTTCCCAAGAATGCAGGTACAAACTTTGTGCTAGGCTGCTAGC TATTTCTGGCCTTCTCATGAAAGCCACTTCAATTAATCATTAAGAAATTTGTACATGTTTTGGAAATTTTGTGCATATGT TCGGATACACGTTGAAAAATTACAGTGAAATTAAAATCATGGCGAATAGTCGCAATAGTTTAAAAAAATTGCTTCCTTCC ATCTGATTGTACGTTTGCTCTAGTTTCTTACCAAAAATCAAGACATACACTTGTATAAATAATTTTGGAGTCAAAATTTA TGAAGTTTCTAGTAGCTTGTAAGCTTCAAAATTATTTCTGAGAAAATAAAGGTTGATGCAAACATGTTATGGTGATGAGT TTTTTTGAAAGCAGAAGGATATATAATATATATAGTGTTGAGAAATAACTCATTCTCAACATGAGTACAGTAACCTAGCT AACAGCCCAAACTGCTGATAAAACCTGCGACTGTAGTGCCTAGCCCACTAAAAAGGTCCCCATTGAAATTGAGAAAACGG TAACCAGTTCAACCAACATGATGATGAGTTTGTTTACTTTCATTACTAATTAGTTGTTTTTCTCTTCTCATAATACACTC AAGCACACATATTCTTCTATGTACAAAGTTCCTACACATATATATGTATTATAGTAGCAGTTAATTATCATAAATATTCT TAATTTGTGCTTGCTTTAATTTCCATCGTTTACAAATAATAGGACTTAAAAGATGTGGAAAGAGTTGCCGGCTTCGCTGG GCTAACTATTTGAGGCCAGATATAAAGAGGGGGAAATTCTCTTTAGAAGAAGAAGAAGCCATCATCCAATTACACAGTGT ATTGGGTAACAAGTAAGTGATAAAGCTAA
CDS sequence (LotjaGi3g1v0079400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAGTCGAATTCTGGTGAAAAGAATGGAGTGAAGAAAGGTCCATGGACTCCAGAGGAAGATCAGAAACTCGTCGA TTACATTCAGAAACATGGGCATGGGAAATGGAGAACCCTTCCCAAGAATGCAGGACTTAAAAGATGTGGAAAGAGTTGCC GGCTTCGCTGGGCTAACTATTTGAGGCCAGATATAAAGAGGGGGAAATTCTCTTTAGAAGAAGAAGAAGCCATCATCCAA TTACACAGTGTATTGGGTAACAAGTAA
Protein sequence (LotjaGi3g1v0079400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKSNSGEKNGVKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGKFSLEEEEAIIQ LHSVLGNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 2 | 88 | 87 | 1.6E-56 | – | |
| PANTHER | 2 | 88 | 87 | 1.6E-56 | ||
| ProSiteProfiles | 9 | 65 | 57 | 25.43 | ||
| Gene3D | 12 | 67 | 56 | 4.6E-22 | – | |
| SMART | 13 | 63 | 51 | 3.3E-15 | ||
| Pfam | 14 | 61 | 48 | 1.6E-17 | ||
| SUPERFAMILY | 15 | 88 | 74 | 2.94E-25 | ||
| CDD | 16 | 61 | 46 | 5.7512E-12 | ||
| ProSiteProfiles | 66 | 88 | 23 | 8.282 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0079400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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