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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0083200 |
| Transcript ID | LotjaGi3g1v0083200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT4G13100.3 RING/U-box superfamily protein; Swiss-Prot: sp|Q6FPI4|RAD18_CANGA Postreplication repair E3 ubiquitin-protein ligase RAD18; TrEMBL-Plants: tr|I1MME7|I1MME7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0083200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:9259539..9263663) extracted from Lotus japonicus Gifu genome v1.2.
AATTAACTCATTTCATCTTTCAAATTTAAGGTTGGCGATTCTCACTAATAAAAATAGAGCGCAACCGGGGTATCCAAGGC ATTCTCTGTCTCACTCCCTTTAAATTTTGTCTGTCTTTGCTTTGGGCCTCTCTCGAATGGTCCCACTCACCAAATTAATG ATCCCACCCTCAATGTTTTTACTTTGCTGTCGTTTCTTTCCGCAAACATCTTGTCGTTTTCTGCTGTAACTCTTCACTTT CCCATCTTTTATTTTTCTTTCTCTTCTTTTCTTCTCATTTTCTCAGGAAAAAGAAAGTTTAACGTTGACCCATTGTTTCC TATTACTAACTCCTTTGCTCCCGGGCCTGCTCTTCCATCCCACAACTTTCCTTAATTTCTACTCCATAAATTCTCCATTG TAGAAACAAACATTCCATTCCATAGATTCATTCGATTAACTTCCTTCAACTGGGCTGCAACCAATTGATCCATTCAACAT TCTTCCAGGACTCCTTCTGAGTTCGACGGACAACGGAGCACCGTGAAGACCATCATCTTACAGTCCTTTCTCACAAGAAT TTCATCGGTTCTCTTCAATCAACACAATTCCAGGTGATTTGATCAGATACTAGAAAACGAGAATTTTCTTTGATTATGGA AGGTCGTAGGAGGATGACACTCTATGATCAGATGGCAGCTGGGGAAACAAGCAGTCGTAGCTCACTAGCTAGCTTGATCT TCGGCGATGTTGTTATGGCTAACCAGAATTCCGAGGCTGGAGGTGAAGCAGAAGCCACCATGAACCGGAATCGAACTCTG TTAGATGTCATCCGAGAAGATGAGCCCAACAACATCAAGGTAACTTTTGTTGTCAAATGTCAATAGTTTTAGGTAAATGA TTTTTAAATCATCCTGATCTTTATTTTGAAAATAATTTCATTTTAATAGTTGACCTTTAATTTATTTTGTGCAAAACATT CCTCACTATTTATTCATTTCAATTGTTTTGATAAAGTTCAGTTTTCAATAAAATATATAAAAAAACACATTTTGAGAGAA TCAATCCAAACTAAATTCGGTGGCACATTCCTCTCCAGCCTTCTTCTAACAAAAATTAACAAATAATTTATGAGTTTAAT CATTATGCACAGGCAGTATAATTTTCTTACATAATTATACAATAAAAATCACCAATTTATCATGTTATAATTAAAAGTGA TATGATTAAATTTATGTGTAAAACTCTTTACAAGTATGAGTGTTCTTTAATTTATATGTCAAGTAACTGGTTTAAGTTAA AAGAAAATTAATTTATTATGTCAGTTGTACTGGCCAGGCCAAAATGTGACTTTTCAAAATTAGGAATTGAATTAAAAACA TGTTTTTTTAATTTAAAAAAATTAACCTTAATTTTATCTTTCAATACAAATATTTATTTTTAATATGTTAACTTTTATTT ATCAAACCTTATTAAAGGATCGAAGGTCATGGAAAGCCTTGAAGGACAAGCTTTGGCTCAAGCGCGCTGGTGGCTCCGAC TCGGCTTGGACTTCTACCACAGTTCACATTCCCATCCACAATGTTGATAGCCACGGCGGAGCCTCATCCCAATCCACCCG TCGCAACTCGGTTTCCTTCCAAGAATACCTTGACTCAGACGAGTCGACTCAGCCAGGCATGGATCACCAACAACCCAACG ACGTCGTCCAAGAAAACCTTGACAATCCTCCAGTCGTTGGCGTCGCTAATTCCTCCGGCGAGGCTACGACGACGGTTGGG CTAGTGAACATGTCGCTAATGGAGATGTTAGAGGAGACAGAGGTGGATTTTGAAGTACGAGTCAATGGTGATGATGAAGA TAATGATGACGAGTGTCAAAAACAAGGAGGAGGAGAAGAAGGAGAAGAAGAACAAGGGGGAGTTGAAGAAACGGGTGTGG TAGCGTATAATTGTTGTGTGTGCATGGTGAGGCATAAAGGTGCGGCGTTTATACCGTGTGGCCACACGTTTTGCAGGATG TGTTCAAGGGAGCTTTGGGTGAATAGAGGGAATTGTCCTCTTTGCAATCATTTTATATTGGAAATTCTTGATATTTTCTA ACCACAATTATATTCATTCTCATCGTTATTTTTACACATCTAAATACCTCCATCTTCTACCAATTGTGGTTAGGTTTATG TGGTAAGTACAATATTATTCTTTTTAAGTAATGGCTCGTGTTTTATTTAAAAAAACTCGGGGACAAAACTTGGTTAGACA GAGGTTTTACTCTTACTTTGCCTCCTGAAATTCCAAGTGCACATGCTTATTACATTACAATAATGATGACTAAAGGGAAT TACATGATAATATAATGGTAATGTAAATGGTGGAGTGGAATTTGAATCTTCCTTATTCTTTTTTTGGTTACAGGAGGAAG ATAATCTTCCTTATTCTGATTATGAATAGAGTGAATTAAAGAGACAATCTTAGTTTGCTTTTGATAAAAATTACCAGTTA TTTTGATCCTTAGGATGAATCCGGCTACCAAGTTGATCATTGCGATGAATCTGGCTACCGAATTGGTAGAGTATCATTAC ACAACCCACATTGCTTTAGAGCTACAAGGCAATGCTGCAAGCTTTGAAAGAGTGATGCTTAGAAGCTAGAGCTACAAGGT AGCGATGCAAGCTTTTAATGCTACAAGTATTAGGGATGTGGTTTTCCCTTTATCAGAGCTTGAGTTTCTTCTCTTAAAAG ATTCTTTAATCGTCCCCTATTTTGTTCCTTGTGCTTGTCTATTGTTAATTTTTAATTTGTTCATTGTGCTTGTCTGTTGT AAAACAAGTTCAATATCCAAAACCCTTGCAAAAAAAATTACAGGGTCAAAATACCAATTCAGCCATATTTTACATGACTA CAAATATAGTTAACCCTTCAAGTATTTTACAGTAAATTGTCTTAATCACTCACATAAGTAACTTTACCAATAGAATTATT TATAAATAATAAATATTATTTTATAAAATTCTAAATCCACTTATTTTAAATATGATTGGTTTATTAGACTTGGGTAAAGT TAGACAATAAGACAACCCCTAACATAAAACACTTAATCTTAGTATTAGTATAGGTGATCAACTATTTTTGCTGCTCTAAT TAATTAAAAAAAATTATACAATTATAAGAAAAAATAAATATAACAGGACATATAGATACCTACACTGGAAATTATATTGT ACAAATTTTACAAAATTGCACATGTAAACAAATGTACATATGCAAACGCGACATATATGAGATAAAGACACGTGGTCCTA AAACTGAGGATACATTGAACTTGATTCCAAACTTTATCATCATAGATTCATAACAATAAACAAACCACTAGCTCCCCCAA AACCAGTAGCTAGCTATACCACTTTATGCCACTGGTTTCCCCAATCTTTTGGCACATCATCAAGCACAATCTTAGTATAT ATAAGAATAAGAACACCTTTCACTTCAACTTCCTCAATTCAATCCAAAATCTCCAAATTAAGACGACTTCTTATATCAAG GTTCATTATTTCTTGTGTAATCTGAAAAGCAAAGCAAGAATTTGTTTAATTTCAAGATGAGTTCAGCAAGCAGAGCTTGG ACAGTGGCAGCAAGTGTTGGAGTTGTGGAGGCCTTGAAGGACCAAGGCTTGTGCAGGTGGAACTATGCTCTAAGATCAGC TCAACATCATGTCAAAAACCATTTGAGATCCTTGTCTCAGGCAAAGAAGCTTTCTTCTACTTCCTCCTCTTATGCTATGG TTTCCAAGTTCCAACAGATCATTAAAAGAAGAGGAAGCAAAGAAGTCAGAGGAATCATTGAGGACAGTCATGTACTTGAG CTGTTGGGGTCCCAACAACTAGCTAGAGACACCGGGGCAATCACAAAAGACTGATTCTGATTGAACCTGTAATGGTGCAA TTGTATATAGTAGTATCCAGAACTGCTTTTCCATTATCACAGAAATTGATGTAAATTTTGATAAATGGAAAATGAAAGAG AATTAATTCCAATTTTATGTGTTTTCTTTAGTAGTAGCATATCATTCTTCACTTTGATCATACCACTAATGCTTAAATCA TTGTGTTATGATTTCTCTGTTTCTATATGTATAAAGGAATAAAGC
CDS sequence (LotjaGi3g1v0083200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGTCGTAGGAGGATGACACTCTATGATCAGATGGCAGCTGGGGAAACAAGCAGTCGTAGCTCACTAGCTAGCTT GATCTTCGGCGATGTTGTTATGGCTAACCAGAATTCCGAGGCTGGAGGTGAAGCAGAAGCCACCATGAACCGGAATCGAA CTCTGTTAGATGTCATCCGAGAAGATGAGCCCAACAACATCAAGGATCGAAGGTCATGGAAAGCCTTGAAGGACAAGCTT TGGCTCAAGCGCGCTGGTGGCTCCGACTCGGCTTGGACTTCTACCACAGTTCACATTCCCATCCACAATGTTGATAGCCA CGGCGGAGCCTCATCCCAATCCACCCGTCGCAACTCGGTTTCCTTCCAAGAATACCTTGACTCAGACGAGTCGACTCAGC CAGGCATGGATCACCAACAACCCAACGACGTCGTCCAAGAAAACCTTGACAATCCTCCAGTCGTTGGCGTCGCTAATTCC TCCGGCGAGGCTACGACGACGGTTGGGCTAGTGAACATGTCGCTAATGGAGATGTTAGAGGAGACAGAGGTGGATTTTGA AGTACGAGTCAATGGTGATGATGAAGATAATGATGACGAGTGTCAAAAACAAGGAGGAGGAGAAGAAGGAGAAGAAGAAC AAGGGGGAGTTGAAGAAACGGGTGTGGTAGCGTATAATTGTTGTGTGTGCATGGTGAGGCATAAAGGTGCGGCGTTTATA CCGTGTGGCCACACGTTTTGCAGGATGTGTTCAAGGGAGCTTTGGGTGAATAGAGGGAATTGTCCTCTTTGCAATCATTT TATATTGGAAATTCTTGATATTTTCTAA
Protein sequence (LotjaGi3g1v0083200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGRRRMTLYDQMAAGETSSRSSLASLIFGDVVMANQNSEAGGEAEATMNRNRTLLDVIREDEPNNIKDRRSWKALKDKL WLKRAGGSDSAWTSTTVHIPIHNVDSHGGASSQSTRRNSVSFQEYLDSDESTQPGMDHQQPNDVVQENLDNPPVVGVANS SGEATTTVGLVNMSLMEMLEETEVDFEVRVNGDDEDNDDECQKQGGGEEGEEEQGGVEETGVVAYNCCVCMVRHKGAAFI PCGHTFCRMCSRELWVNRGNCPLCNHFILEILDIF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 275 | 274 | 3.4E-70 | – | |
| PANTHER | 2 | 275 | 274 | 3.4E-70 | – | |
| MobiDBLite | 128 | 149 | 22 | - | – | |
| MobiDBLite | 190 | 217 | 28 | - | – | |
| Gene3D | 194 | 275 | 82 | 4.4E-12 | ||
| SUPERFAMILY | 226 | 271 | 46 | 1.86E-13 | – | |
| Pfam | 226 | 268 | 43 | 1.5E-9 | – | |
| SMART | 227 | 264 | 38 | 7.6E-5 | ||
| ProSiteProfiles | 227 | 265 | 39 | 10.97 | ||
| CDD | 227 | 264 | 38 | 1.06643E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0083200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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