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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0085200 |
| Transcript ID | LotjaGi3g1v0085200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sterile alpha motif (SAM) domain-containing protein; TAIR: AT3G07170.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|Q9Y6Y8|S23IP_HUMAN SEC23-interacting protein; TrEMBL-Plants: tr|I3T340|I3T340_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0085200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:9603308..9611450) extracted from Lotus japonicus Gifu genome v1.2.
GCCGTTTCCAACGTTTTCTGGTGGGGCGCCAAAGCTAATAGCCGAAATCAGACAAGTCCCTTTCACTTCAACCCTTCCGC ACCCAACCCAATTTCCTCTCTCAAACAAAAACCTCTCTTTTGGATCTTTTGATTCCAATCTTCTTCCCCTTTTCCCTGAA ACTCTATCTCCCATCACAAAACACGGTGTTGTTTTCCCTTCAATTTCCATTTCCTTTTCTCGAGAAACTGAATGCGGTGT TGTTAGGGTTTCGATTCTCCGCACCTCTTCCACCGTTCGTTCGGGTTCCCTGCACCTTCTTCCTCCGCGAATCTCACACA CTCCGCTTCCGTTTCCGCTCTCCTTTGCTTCGAAATTAGGGTTTATAGGTTTGGGGCTAATTCTTCTCTCGGTTTCGAAC CAGTTAGATCGTAGAAGATGTATGCTGATCGGGTGGAGAGTGGAGCAAGGAGGTCCGTCAAGGAACGACTGAATGGGACT GATGCCAGTGGCTCTACTCGCCAGCATCGCCAAATCACCGGCAAGAGGTTCGCAATTCTCATTCAATCATTCTTTCATGT TATAGTGATAATAATTGGTTGAATTTTGATGATTTTGTTTTGGTTTTACCGTTTTAGTGTATTTAGCTGTTAGCTGAATG ATGTATTAGGGATGGATTGTATAGAGGTTATGTAATTGTTAATTGTGAATTGAACATTTTTCATGGGCATTTGTTTACTT CCCCAATACTGAAGTTTTTAGAAAATTTGTAACTAGAAATGTTAGTTTTAGTCAACTTAAAGAACATTTTTCGTGTTTGA TTAACGTTTATATGTTTTGGTCATGTTTCTCTAAATTGAAATGTTGGGAGGAAGAAGTGGGAGTGGTTTTAGTGAATTAT TCATATCTAGCTGCTGAATAGACCAACATTTGGTGACGGGGTGAGAATAACTCGAATTGTCACTGGTTGGATCAATAGAG AAAATGTCTATGTAATTGAATTAGGGCTGTTGATGGAATTCCTGATCCACTTGATGGGCTTTATGCTCAGTATAGAACCA TTTAGGCTTTACTTTACCTGAAACACTCATTTATAGCCAATTGCAGTTATGTTAGAAGGTAGAGGGACTAAACCAAGTCT GATCAGCCCAAAAACAGGACGCTCTTATTGTGATACTATTTTTCAGTGGGTTCTGACCAGTGACTTTTAACGCTTGAGGT TCCCTTGTTAGTGATCACAAAAGTAGGATGCAGTTGAGGCTTAAGAATGTATAATTTGAAGCGAGTTTGCATGGGGTAGA AAGAGTTAGACTGGAGTGTGAGAGGTTATGTAGGACTAGAAGAAAAAGTGTGACTGCTAGCAACTGATGACAGTAAAGAT AGTTGAGCGGAATTTCCAAGACTTGGGGGAGTGTAGATGGGGCAGAAAAAGAAGGGTTGGATAGACCGATAGAGGTACAG AGGTTGGAGTGGGAGAAAACAGAGGGGAGAATTGGAAGAGCAACAGAAATAGGGATGGAGGAGAGAGGGGCAATGTGGTA GAGGATAACCATTCATTTGTTTACCATTCAGACAGAGATATTCCCAAATATGACATGGGCGAGGAAGGGGTTTAGTGAAC TACGAATCTAGAACCCATACGAGGAGTTGGCGATGCATCAACAACGAGGTTGTCTAGAACCAACTATCCTAGAACTAGAA GCTTAAGCTGTTGGGTGACGACACATGAATGATTTTATATTATATTTCTAACATATCCCTTCACACAAGAGCCAATTGAA CTTGAAGCGTGAACAATGCATCGGTGCATCTACCATGTGCTGAAATTGAACTTTTTATTAGAATAATGGGGGCAACAAGG ATCAGACTGTAGATCACTAAGGCATACACCTAATACCATTTAATCTAAGCTTTTGGGATGGTTGGTACATCAGAAAGGCA TAGCTCAAGAGTATGCGCCCTAAACCTTAAAACCTGAACAACAGTCTATGTGATACTCTTTGAATGGTTTGACGGAGAAG ATTCGCTGCTGGGTACAAATTTGTAATTGTGAGGCACCTCTGCTGGCCATGCAATTGGTTTAGAGTTGGCTATAAAGATA AGGTTAATGCTACAATTGGCAATAGTTTTAGAGTTGGCTATAAAGGTAACACGTAGAATACATCCTATAACGAGTGGCCA ATGTGGATTTGTGGGAAAGGAGAAGGAAGAGCCTCTGCTATCACTGGGATTTCGCTAGACAAATGCTGGAGAGGATGAGG TTATCATCTAGGAAGGAGAGATATTCGCGGCAGAAGTTACAGAGTTCAAAGATAATGAAGTCTCTCAAGAAGGTAAAGTT AAGATTTTTGTATATTTATGTGGTAGATTTATTTCAGAATTAGTACGGGAGTTGTCATCCTTGAAGGCTGATGGCCGAGT TGGTGGGATTCCCATTATTATTTAATAGACAGTGGTGGTGCCTCTCAAAATTTCATTTCTCTCAGGCTTAGTCAATATTT GGGACTTGCTGCTCAGGAAACTAACGGTGGGTATTAAATTAGTTCATGGATATCAGGTGTTTCTCATGGGATCTGTAGTA AACTCAAATCAATGTGGTAGGCTATAGTTGTACCACTGATGCGTATGTTCAGGATGTAGGTGGCCTGGAGGTAATTATAG ACATTGCTTGCTTACAAACTTTGGGAGAAGTGCTAACAAACTTGAGTACGATCACCATGTAGTTCTACACAAATGGGGGT GATGTAGAATACAGGGGACTCAAATGGGGTGATATAGATACCATGTAGTTCTTCCCTGCACACCACTTTGAGGACTCAAA TCCCCTACTTCGTAGCGGATGTGGAGAAAATTGGAATGCCTTTTTCAGACTTGACTCCATCTCAACAAAGAGCGTTTAAG GAGCAATAAAACTTCACTCGGGACAACGGCTTGTAACTGTGCGTCCATATAGATACCCACATTTCTAAAAGAATGAAAAT TGAGAGACTGGTGCAGGAAATACTGCAAATGGGCATACAAGGCCTAGTAGTACACGGCCTATTAATAATGCTTATTCAAG TTCGGTTTTACTTGTGAAAAAGAAAGATGATACTTGGAACCTGTGTTGATTTTCGGGCTCTCAAGAATGTCATCATTCTT GATTCATTTCCATTCCTGTTGTAGATGAATTTTTCGATGAATTACATGGAGCTGCTTAATTTACAAAGCTGGATTTGAAG TCAGGGTATGAAGACATTGAGAAGACAGCTTTTCGCACACATAGCTGTTATGAAAACTTACTAATGCCTTTTGGCCTCAC AAATGCACTTCCATCCATGTTTCAAGCTACAATGAGTGAAATATTTTGGCCTCCTCTTAGAAAGTATGTGCTGATAATTT TTGATGATTATTGACATATAGTATGGATTGGGAGTCTGAAAGGTGCTTCAATAGAATCAGGTTTTTCTAATCACAAAAAG TGGGTTTAGGAATGACATTGTACCTCTTCTCTGTCCAATTCCTCCCTTCCTTCTCTCTCTCATTATCTGCTTTTAAGCAT TTTTTCTTACTAAATTTTCACCGTCCTCACTTCTCTCTCTCCTCTGCTTCCAAGTGTCTTGGTAGTCACAAGAAATCCCT TATTCATATTCCCTTCCAGCTCACCTCTCTTGCTCATGTGAGTCAAAACCCACTGCCTTCCTTTTATTTTTTGTGGCATC ATATGCTGTGATGGTTATCACCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAAGAACTATAGT GATAATTTGATTCTTCGTAGAAACATTGTATTCGGAATGCACATTTTAATGTTTTGTAGTTTTTACTTATGAGAAGTTGA AACTAAGGATCACCCATCTGTTGAGTTACTGCTTTTTGTATACTCGTAAAAAGCTACTGTTTCTGTACATCTCTTATGTA TCGTGTTCATCTTAGGTGCTTGAATGCCTATTGAAACAAAACATGATGATAAATTTGAAGTCTTTATTTGTTTTTCCTTT TTTTGCAGATCGAGGCAAGATGACAAGTGGGAACATGATCTATATGACAATGATGAACCCCGGATCACTAGTATGGGTTG ATTCTGTTATTCTCATATCCAAGTATAAGTTACCACTATTGTTGGGTTCCATTAGTTCTTTTTAATGGGTTCTGATTGTT TGTTAATGGCTTGTGAAGATCGCAAAGTTACTGCCCAAGATCTTCGTCATAAGCTTCAAAAGAAAGGTCTTCAACCAGCA GCTCCAAGTGGAAAGAGTTCTGTTCCAAACATGCGGGATCTCCGTGAAAGGCTATCAGGGACAATGACTGCACAACCTAA AAATTCTGACCCTCCAAAGTCAAAAGTGATGGGTAAACCAAGCAATAAAAGCGTCGGTGTCGAGGCTCCTGCAGCAAAGA TTAAAAGATCCACTAACCCTGCTCCTAAAACTTTGGCACGAAAGGTATTATTGTTATTATTTGTATTTAAATATTTAACT AGAACATTTTTTTAATGTGGTAGGTAAGTGACATCAGTCTCAGTACATGTCATGTCATATCATATCTGTACATGTGTATG TTCTACTGTATTTACTGTCAAACAGATTATGACTATTTAGTGCTTTGAGAGGGTATATTGAATGGTCAGCTAGTATATGC AATGAGTCTGTTTATGAAGTAGAAATATTTTAATGAAGTACTAGAGTACCAAATTTGCAAAGATGTGTGTGTATTATAAA CATATATGTATTTTTTTATTGATTTATTATTATATATGAACCAATGTTATCATCATTTATCAAGTACATTGGCCCAATTG GTCCAACTCCTAGAATACCATGATTTCAAAACTGAGGCATTGGTAAATTGATTACCATGGTAGCTATGTGCTTATCATAA AGAAAACCATGGCAGTTATGTGAAAGATGGTTTTACATATAATGATTACTGTCTGTTCCAACTGCCAAGTTATATGGTAT AGCTGGTGAGCTTAATATTGCTAAAGACAACATTTGCTATAGTAATGGTGGTATTTGAAAATTTCTAGTTGAAAAAGCTG AAAGGGAATCTAGCGTTGGTTTAGAATTCAATCCACATCACTGGGTTGGTTATGATATATGCTTTTAGATTCCTGTAATA GTGATTTCAGTTGTTAAACTATTAAGATGATCGTTGGTGGCCATTTTGTGTTCAATTTCCTTAAGTAGATGAAATTTTCT TAATTTTTAGTCAAAAGAATGTTCTTTTTAATTTTCTTGTTTTGTTATTATTTTCTTTACTGAATAGAAGAAAATTAGAA GGGAATAAATTCGTATTCTTGTTTTGCAGGCTGAGACTTCAGTGGATGAATTTTTGCAGTCGTTGGGTCTCGAAAAGTAT CTCATATCTTTCCAGGCTGAAGAAGTATGCTGTGCATTACTTATCTTTTTCCTGCATTAGAGAAAATTCATTATCTTAAC TGGGTTTTATTTTGAATGTCAAGTGATAATATTTGCATCTAAAAGCTGTTATTTCAGGTTGATATGACAGCTCTCAATCA TATGACCGATGAAGATCTCAAAGCTATGGGTATACCAATGGTACGCATAAACCTACCTAGCCTTGGATTTGTGTACTTTT TTCTGTTTTCGTCAGTTATATCTTGCAGTTCTATTGGTATTGTGACACATGTTCAATATGGAACGGGCCCTCTAACTTTT AATGGTGCTATAGTCTCTGCATCTCTCAATGACATTTGATATATTAAATTGACCCTTTTATTTTGACATTGAGCAATATT TGCTACGCTTTGGTGCATCTGGATGAAGTGTAACTCACAGTTTTAAGATTTTTCTATGGATAAACAGCTGCTTTGGGATA AGATTAGGTATTTGACTGCCATATGGTATAATGCACATGGCAGTTTTAGGGAGAGGCTCTTTCAAGTTGAGAGTTTTGGA GCCTTGAGTTCGTTTATGGTGTTTATTTTACCTTCCTCTTTTTTAAGGAGGATTTTTTATCATCCTTACCCTTTTATATA ATTCTTTCTCTTCCTAAATTTCTTCTTTTATCAAAGAAGAAAAATGAATATTATTTCTTACTCCCTCCGTTCCTAAATAT AAGACCTATTCCAAAAAATTGCGCTTATTAAGAAAGCATTTAATGTGACTAATTAGTGTATTGATTTTTTAAAAATGCAT ACATTCTTCCCTATTTACCCTTTGTCATTTTCTCTCACTAATAATCATTGCATTTATACCAAAAGTCATAGTTAGTTGGA TTAGTAGTAATTAATGGTAGGTGGTAACTTTGGAATTGAAAACATACAATTAATGTGAGGGGTAAATATGGAAGAGTATA AAACCTTTTGCTAGATTATTTTAAGAGGTCTTATATTTAGGAACATGAAAATTTTGAAACAAGGTCTTATAATTAGGAAC GGAGGGAGTATTGTTTTACAAGAAACAGCAAATATATGGTCAATAGTCAGTGAACTAACATTTCTTCATCCATTTTTTTA ACCACTCACTAGGGAATTGTTGGGTTAAGGTGGGACATCGATTGGTTTCTATTACCATCACAAGCTGCTTGTGCTTGGAT ACTGTGTACCAAGTTGCTTAATGTTTTTGTCCTGAATTTCTAGTATTGTGTATGTAGTTTATAATTAATAAGATTTGGTA GTTTGTGTTGACACTCCGACATGTCCCATTTATCTCCTTGTGTTATATGTATGTTATCAATTGTGTATAAATTTTAGTTG AATGGCAGTAAACTGAGATCAGACCTTGTGCCTAAGTCGATGAGATCATGACCCTGTTAAAAACACAAAATTGGAAATTC CCATGTCGGCAAGACGTAAGGTCATGAGTGCACCTTCCAAACTCATGGTTGGTGGCCCAAATCTAAGAATCTGACTTTAA TTTCCCTTTACTCTTGTCTTGTCCATAAAGGGTCCCTGAAGTTTTAATGATGTCACACAAAATGATTTTCCTCTAAAAAA ACTAGGTGTGTTAAAAAGGTTTTGTTTCCCACAATACTTCAATACTTCTTGATGGCTAAACTTACCCTGACTATCGTATG TTATTAACTTATCTAATGTGGGGGTCTTGGGTCCTTGATTAGTACGGGAGTTTACACAGGGTTTTTTGTGTTTTATTGAT ATGGTAACTTGTAAGTGTGACTAATATTTTCATGTTATAACTTGTAAAACATTTCAGTTTCACCGTACTTTTGCTTCGGT CAAGCATATGCTTTGTTTTTGTTTGTGATCCATTCAGTATGTTCCTTTTTGATTTTGTTACACATCATGAATATGTTTTG CTGGTTCCAGGGGCCAAGAAAGAAGATACTTTTAGCGTTGGAGTCTAAAGTCTGACATGTAGTTTTGGAATTGATATCAT TAGCTGGATGGACCAGTTGTTTATGGACAGTGGTGGAAGATGGATCAGCTTCTTAAAACAAAGTGTAATAGCATAGCTCT TTTGACTATCTTTAATTGTTATTATTTTCTTTTGGCTTAAATATACTCTGGAGGTCCCTAGAATTGTATGACGTACGAAA ATAATTGTTATGATTAAATCTAGTTCAGGCTCAAGAATGTGTAAGTTTCCTACACAGGTTTGAATCAAGTAAATACCCAA GGGGATCAACCTAAGAAATAGCATGAAGCATAAGAGAAAACCATTGATTATTTAACATTGAAACACTGAGAAATAGATTA TATGAGTATCAAAACAATTAGTTCAAATCCCAGCAAATGAGAAATTAGCTATCCATTTCCATGGATATCTTTACAATCAT AAAAGAGAAGAAAGATGAAAAATTGACTGTTATGGTTCCCAAACGATGAAATCAGCTCCAAAGGATCTAGCCTCCTAGGT CTCCCTTGATGTTTTCCCTTGTGTTCTCTTTGTTTTTGGGTGAGTTTCAAAGTGATAGAGATCTGTTTTTGTGTTTATAG TGCTTCAGATCTGGTCAGAGTGGTTAGCACTCCATTATGTGCGCTTAACACCTTGTTTCTTCAAGCTAAGGAAACGTCCA CTGCCTTAGGGCGCTTAGCATGAAAATGGCAGCAAACATGATTTCTTTCTCTGTTGAAAAGGTGGTAAGCACATTTTTTC CAGCAAGCTTCAAAACCTCCATTCTTCACCAAATCTTGTGCATTCCCTTGGACCTTCATCCCT
CDS sequence (LotjaGi3g1v0085200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGCTGATCGGGTGGAGAGTGGAGCAAGGAGGTCCGTCAAGGAACGACTGAATGGGACTGATGCCAGTGGCTCTAC TCGCCAGCATCGCCAAATCACCGGCAAGAGATCGAGGCAAGATGACAAGTGGGAACATGATCTATATGACAATGATGAAC CCCGGATCACTAATCGCAAAGTTACTGCCCAAGATCTTCGTCATAAGCTTCAAAAGAAAGGTCTTCAACCAGCAGCTCCA AGTGGAAAGAGTTCTGTTCCAAACATGCGGGATCTCCGTGAAAGGCTATCAGGGACAATGACTGCACAACCTAAAAATTC TGACCCTCCAAAGTCAAAAGTGATGGGTAAACCAAGCAATAAAAGCGTCGGTGTCGAGGCTCCTGCAGCAAAGATTAAAA GATCCACTAACCCTGCTCCTAAAACTTTGGCACGAAAGGCTGAGACTTCAGTGGATGAATTTTTGCAGTCGTTGGGTCTC GAAAAGTATCTCATATCTTTCCAGGCTGAAGAAGTTGATATGACAGCTCTCAATCATATGACCGATGAAGATCTCAAAGC TATGGGTATACCAATGGGGCCAAGAAAGAAGATACTTTTAGCGTTGGAGTCTAAAGTCTGA
Protein sequence (LotjaGi3g1v0085200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYADRVESGARRSVKERLNGTDASGSTRQHRQITGKRSRQDDKWEHDLYDNDEPRITNRKVTAQDLRHKLQKKGLQPAAP SGKSSVPNMRDLRERLSGTMTAQPKNSDPPKSKVMGKPSNKSVGVEAPAAKIKRSTNPAPKTLARKAETSVDEFLQSLGL EKYLISFQAEEVDMTALNHMTDEDLKAMGIPMGPRKKILLALESKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 18 | 18 | - | – | |
| PANTHER | 1 | 205 | 205 | 6.1E-34 | – | |
| MobiDBLite | 1 | 144 | 144 | - | – | |
| PANTHER | 1 | 205 | 205 | 6.1E-34 | – | |
| MobiDBLite | 34 | 72 | 39 | - | – | |
| SMART | 143 | 206 | 64 | 1.9E-8 | ||
| ProSiteProfiles | 146 | 206 | 61 | 10.752 | ||
| SUPERFAMILY | 148 | 203 | 56 | 2.27E-14 | ||
| Gene3D | 148 | 206 | 59 | 5.9E-22 | ||
| Pfam | 149 | 203 | 55 | 2.9E-16 | ||
| CDD | 150 | 203 | 54 | 3.06715E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0085200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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