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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0094100 |
| Transcript ID | LotjaGi3g1v0094100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TATA-box-binding protein; TAIR: AT1G55520.1 TATA binding protein 2; Swiss-Prot: sp|Q42808|TBP_SOYBN TATA-box-binding protein; TrEMBL-Plants: tr|K7MHA4|K7MHA4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0094100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:11556554..11562683) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTCTCTCTCTCTCTCTCTCTCTCTATAAACTCCAGATCTTTCCACACAAACGAAACGAACCACCCCCTTCTCTCTCT TTATATCTCACACAATCTGCAGACAAACACTCTCTCTTTCTCTCTCTTCACCTCACATCGCAACATCGCACATACAAATC TCAAAACCTTCTTCATTCATCATATAAAAGACACCCTTCTTTCGAATCCTTCCCGCTCTCTCTCTCTCTCACTCCAATTT CCAAAACCCTAATTTTTCCTCTCAATTCCAAGGTCTCATTCTTTCATTTCTCAATTGCAAAATCTAATTCATCCTATATA ATTCCCCAAATTTCATCTCCATTTTTCAATATCAAATTACAATTGCTTCAATTTTTAGCTTTTAATTTTACTAAGACAAC ATTGGGATTCTTTCTTTCTTTTTTGTGTTTGAATTTTTATTTATAAAAATTGATTCTTTTTCATGTTAAGATCAAAAGGG GTCATTTATTTTTTTAATTTGTTTTTGGGGGAGGTTTGTGATTACTGATTAGTGTATGATATATATATGTTAGGGTTTAT GGCTGACCAAGGATTGGAAGGAAGCCAGCCGGTTGATCTACAGAAGCACCCTTCTGGGATTGTGCCTACCCTCCAGTGAG TACCCATTTTATTATTTGATTACAAGTGCTGGCTTCATGGGTTGCATTTTTTTAGCATCGGATTGATTACCCTTGCGTTT CGTTTGCTTTATTGAATGATTAGACAGTTTTGTGTTGAGAACTGACTTGGTGTTGTTTGTATCCAATTGAGGCGGTTTCC CTGTGCTGTCTTGTCTTTTGACATGTATGATGATGATGATGTTGTTGTTGTAAATCTAGCTTTTAAATAGTGTTGTTAAT GTTGGAGAGCCAAAAACCCACTATATTTGACAAATAGTGGCGGATTATATATATTGGCCATGGCGAAGAGCTAAAAACCT GCTATGGTGGATATTTGATGACACTGCTTTTGAATAATAATGGAGGATGTTGAGTGCTGTCACTGTGACTGATATTGTTG CTGGTTACATTGTGGTTTCAAAAGGGGTGAATCAGGTATGGCCTGATGGGTTTACCTAGACTTACAATAGTGATAATTAG GTTGCCATTTGTCCAATCCTAGTGGCTTGGATTAAGGGAAAAGGTCTTATCTGGTTAGCGCCTCTATTATTTCAAATTTC ATTCATGGTAATTACCATTTATAACCGGAAATAGCAATGGGTGTGGCTACTTAACCTTATTGGAGCTGATGAACCGAATA TGGGATGAGTTGTAACACAGGCTGACTGGTTTAATTTTAAATTTTTGGAAGTCCATATATCCATTGAATAACCAGTAAAT ACTTGACAAATCTTGCTAGGTATAGAGCCCATGTAAGACGGTTTCACCGTCAATGCACTCACAAATTTAATATTGCTGGG GTTTTAGTTTCTACCTTGTTATATTGTGCATAGTATTTATATATCTTCCTATAAGATTATCCATATTGCTGCAAAAAGAT AGGTGATCGGTTCCTACTTTGATCTACCACTAGCTACTTTTGATCAATAACCTTTGCCTATAAATGCATTGGAATATTTG ATAACTTTTCTTCTATTCGCATTGGAATTCAGAATTTTGGAGATTGTACCATATTTCAAGCTTCATGGTTTAAGTATCTT GGATCCATCATACAATGATGGAGAAGTAAATGCAAACCATAGTATTCAATCCTAGTGCCTGAAATGAAAGTGTGCTTTAG TTATTATTTGTGATACGAAATATTATTCAAGATTAAGGAATTTTTTTACTGAACATCTATAAAACCTATGTCACATGGAA GTGATGGAACAAGAGATAGGATGATGAGTACAGACTTGTACAGTTTCATCGAGAGCATAAGCTCAATTTTGAAAAAATAA AACAGAAAGTTTTGGTGGGTGAATGAACACGAAAGATAAGATGGGATTATGAGTACTTTGAGCTAGTTGGACAGCTTCTC TAATGTAAGAGATGTTAGAATGTTTTTGTAACTAGTTTGAGCTTTTATGGAGAAGACATGCAAAAGCCTCAGCAAGGAGA GTAATTTTGAGGGAGGTTAGCTTAATAGTTACAAGTATAGGGAGATAACAAAATTTTAGTCCTAACCATTAAGATATGAA TCAACATCAGATATTTTGTCATTGTTTGATTCATATTAGCCGACCTCACCTTATGGGACATGACTTTTATTGTTGCTTCT ATTCACATTGGAATATCTCATAATGTTTATATTTATAATTTTCTTGGGCATAAGTAATAAATTTGATTCTATTTAGATTG GCATATCTAGAAACTTTTCTTTTTGCATTGGAATTATCTAATAATCAAATTGTTTGTAATACCAGAAATATAGTGTCAAC TGTCAATTTGGACTGTAAGTTGGACCTCAAAACCATTGCACTTCAGGCTCGTAATGCAGAGTATAATCCCAAGGCAAGTA TCAATTGCTGATAGTGAATTTCACTTAAATTCATGTATATCCTGCACTGTGAAGTTTAACTTGTTGGTCGTTTATATCCT ACTTTGTGAAAATCATTGCTTTTCTATCTGGGCAAGAGAAGCTCGGTTGATCTAATACTACTATTTTATATTAATATCAC TTTTGATATCAGCTACTTGTGGCTTCTCTCCTGTTATTCAAAATAATAATGAGCCAATGTGGTAGATGCACTTGTTCTAG CTTGTCATTTGTAATTTTATGCAGTGCTGATATATGTGATATATTTGCTTTCAGCGTTTTGCTGCCGTCATCATGAGGAT CAGGGAACCAAAAACAACTGCACTTATCTTTGCTTCTGGCAAGATGGTATGGTTCTTTGCTGCTAGTGCTACTTCTGTCA TAGAAGTACATTTTGTTCTTCTTGTTCGCATTGTCCTCATAAAAGTGTATATGCAGTTGTATGTTTGTTATGAACTTATG ATAGTTCCGAGTTGTATGGTTCTCTTATTGAATCCCATTTTCTTATCTCCTACATTTTAATTAACTGCAATTGAAAGATC AATAGATGGTCTGGTGTGAATTGGTTACTATATCAAATTTGGATTTGTGCATTTGCCTCTAGTTTATCATTGGAGATGAT TGTAGCATGTTTGCAGACACAATTGTCATAATTGCGATAGTAGCAAGAATTAAGATACGATTCATATAATTTTTTATGTT GGTCTTCACCCAATCGGTACAGATCACATGTATTATTGTCACTAGAACGATAGGAATGTTGATTCTTCTGTGATTCTGGC TTTTCAAATCTTGGAGGGATAAGGAGCTGAATAGCCACCATACGGTGACAAATTTGAGGTGTTGATGGCTGGATGTGGCA CGGTTAACATTGGTGCAGAGGTTTGCAGCTCTGCGTAAACTAGGAAAGGACTTGGATACCCTGTAACTCTGCCTAGATGA AAGTGCCCAGAGAACCAGTAATCAGGGCATGGGGCTGCTCCATTGATAGTGAGCCCCAGGTGGGATGAGGGTCTGTCACT GTTAATGAGGGTAGTGGGATCAGTATGTGGTAAAATGCGCCTCAGGTTTGTAAATCAGAGATGGGTAGTGGCCCTGGAAA GAGGAGTAAAACTCGCAGCTATAGAAATACTGGGTTTTGCGGAAAGAAATGTAGTGGAGAAATCCAAATTATTAATGTAT ATTAAAGAAAATAGTGAGATTATTATTTTATTTCTATATTCAGTTGTACTATATGGGAAAAATATATGTTATGCTACTTC AATAATTGATCACGAACCTTACAATTCACAATTTGGAGAATGGCCTTCTGATAACTTGACAAAATTTATCTGCTTTTTGC TTAAAGGTCTAATGTTTCTTTTTCAAATCCAAATTAATCAGCATGGTGCTTGTAAAGGGCTTTTATTTCTTACTGTGTTA AACTTTAACTGGTATGACCAGGTTTGTACTGGAGCTAAGAGTGAGCAACAGTCGAAATTGGCAGCAAGGAAGGTATGTTA TGAATCTTGTTGGTTTTTTTTAATCTCATTCATCCTGTATATATCATTGATGTTTTCCAAGTGGAGGACTTTGAGGTTAA TTATAATTAGACCGGAGAACAAGCCTTTTGTGTTGGCTTGGTTTTGGAGTTGAAGGAGCTTCTTATACTAATGGAGGAGG ATGGATGGTTTTGTAGTACTCATTTGTTTTGTAAAAGCTTGATGCAACATGTTGCTATCTTTAGTTGGATTTGGGAAGTT CTTTAGGCTTCAAAATCATAGTATATCTAAATTTTTTTCGCTTTCCCCTTGCTTTTCAGTATGCTCGTATTATTCAAAAA CTTGGTTTCAACGCTAAATTTAAGGTACTACTACTACTACTCATTCTCTTTGCTGAGATTATTTCGTTCTTTATATTTTA TTTGCTATTTTTCTTATACCACCAATGGAGTGCTTGATTACCAATTCGTTCCTTTTGTATCATGCTTTAGGATTTCAAGA TTCAGAACATTGTTGGTTCTTGTGATGTCAAGTTCCCAATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCC AGTGTAAGTTATTTGTTTATTTTTCATAGAATTCTGAGGGTTGGTTTGGGCTTGTACTTAATTTTACGTTAAAACTAATC TTTATTTCACAATTGATGTTGGGCAATTGTATGTTTGTTTAGTGATATAATCTAATTTGTATGGGTGTTTTATTGAGCTT TCTTCCTGAGGCGAAATTGTCTACAGAGAAACTGTATTTTGTCCAAAATACCATGTTGCAAAAATATCTAACACATTTAT TGACTCGTACTGAGATACAGATGCATAGCCAAACACTATATACATATATGATGAATGGTGATTCTTAACAAGCAGTTTTA TGAATCATTATGCTTCGTGGTAAAGGAAGTGTAGATGATGGAAAAGACCATCTTCTCTGTGCATGTGCATATAGTTTCCT CTAGTCTTTTTATATGTGCGTTAAAGTCTAGAACTTGAGGAAAATATATGCTGAACTTGCTTGTTTGGGGTGTTAGTATG AACCAGAGCTGTTTCCAGGGCTTATATACCGTATGAAGCAACCCAAGATTGTCTTGCTTATATTTGTCTCTGGAAAAATT GTTCTAACAGGGGCTAAGGTATTTTTTTTACTTTCAATTCCTCTTTATAATCTTCCCCTCCCTCCCCCATTTTTTCCCGG TTTGCTTTATTTTTTATGTTTGTTGTTTTCTTTTTATTTTTTAGGTGAGAGATGAGACTTACACAGCCTTTGAGAACATA TATCCTGTGCTTACTGAGTTCAGGAAAAACCAACAATGGTATGAATATGACTTGATGCAGTTTTTTTTCCCTCATTTTTA TAAATGTGAGCTTCTGATGTCATATTTGGGATATTTGGTGTGGCAGATAATTGTCAAGAACAGGAGCAGTGTGGTCTCGC AGAGAACTTCGTGAAACTGTAAATATTAAGACAAAGGAGACATCTGAATCTGAATTGATATAAAATTAAGACAACCTTTT GTGTTGTTCTGTCTCTGTTTTTGATAGGTCTTGAACTCTTGATATAGTCTTAAGTGAAGGGTATTGGTCTATTGAATTGA CATTTAAAAAGATGATATTCAAGAGGCAGAAGGGAAAAAAGAAGTGGGGTAGAGCTTGAAGGAAAGAGCATGTTGCGTTC TGATAGCTGGGCAGTTGGGCATCTGATGAAGTTTTAAACTCTTGATTTGGTTCCTTAAAGTTTTGATGGTTATTGTCGAT CAGATCTTAGTAGTCATATACTTAAGGAGTATGGAATGTCTTAAACAACAAATAAAAGCTTAGTTGCCACCATTTCTTGG CACACCTGGTCGTCAGGACTTAGGTTTGAGCCCTCACCCCAATGGTGTGGATTTGAATCCCCTTATTGACAGAAATCCAA GTTGAAGGGCATTCCTACTTAGGCAAAATTCACCCCCCCCGGTTTTCACTATGTTATTTGCGCTCTGTCAGGTAGGCCTG GAACTGCATCTCCGAGCCTGCCACCTTTTTTTTACCAAAAAAATTAAATAAAAGCTTAGTTGCTACAATTTCTACCGTTG TATGTAATGTGTTAGCCATCTAATATTAGACTTGATGAAGTAGTCCTGAA
CDS sequence (LotjaGi3g1v0094100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGACCAAGGATTGGAAGGAAGCCAGCCGGTTGATCTACAGAAGCACCCTTCTGGGATTGTGCCTACCCTCCAAAA TATAGTGTCAACTGTCAATTTGGACTGTAAGTTGGACCTCAAAACCATTGCACTTCAGGCTCGTAATGCAGAGTATAATC CCAAGCGTTTTGCTGCCGTCATCATGAGGATCAGGGAACCAAAAACAACTGCACTTATCTTTGCTTCTGGCAAGATGGTT TGTACTGGAGCTAAGAGTGAGCAACAGTCGAAATTGGCAGCAAGGAAGTATGCTCGTATTATTCAAAAACTTGGTTTCAA CGCTAAATTTAAGGATTTCAAGATTCAGAACATTGTTGGTTCTTGTGATGTCAAGTTCCCAATACGGCTGGAGGGTCTTG CATATTCCCATGGTGCTTTCTCCAGTTATGAACCAGAGCTGTTTCCAGGGCTTATATACCGTATGAAGCAACCCAAGATT GTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGGGCTAAGGTGAGAGATGAGACTTACACAGCCTTTGAGAA CATATATCCTGTGCTTACTGAGTTCAGGAAAAACCAACAATGA
Protein sequence (LotjaGi3g1v0094100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMV CTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKI VLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 200 | 196 | 1.2E-151 | – | |
| PANTHER | 5 | 200 | 196 | 1.2E-151 | ||
| Hamap | 19 | 198 | 180 | 27.893 | ||
| SUPERFAMILY | 21 | 114 | 94 | 6.91E-34 | – | |
| CDD | 22 | 195 | 174 | 7.80962E-131 | ||
| Pfam | 24 | 103 | 80 | 4.8E-33 | ||
| PRINTS | 25 | 40 | 16 | 6.8E-69 | ||
| Gene3D | 30 | 111 | 82 | 1.6E-43 | ||
| PRINTS | 49 | 68 | 20 | 6.8E-69 | ||
| PRINTS | 68 | 86 | 19 | 6.8E-69 | ||
| SUPERFAMILY | 112 | 198 | 87 | 5.5E-31 | – | |
| Pfam | 112 | 194 | 83 | 2.1E-32 | ||
| Gene3D | 112 | 198 | 87 | 8.0E-41 | ||
| PRINTS | 115 | 131 | 17 | 6.8E-69 | ||
| PRINTS | 139 | 154 | 16 | 6.8E-69 | ||
| ProSitePatterns | 143 | 192 | 50 | - | ||
| PRINTS | 158 | 174 | 17 | 6.8E-69 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | DNA-templated transcription, initiation | Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription. |
Expression pattern of LotjaGi3g1v0094100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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