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LotjaGi3g1v0099700.1

Overview

Field Value
Gene ID LotjaGi3g1v0099700
Transcript ID LotjaGi3g1v0099700.1
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description 8-amino-7-oxononanoate synthase; TAIR: AT5G04620.1 biotin F; Swiss-Prot: sp|Q8GW43|BIOF_ARATH 8-amino-7-oxononanoate synthase; TrEMBL-Plants: tr|A0A0B2R2H1|A0A0B2R2H1_GLYSO 8-amino-7-oxononanoate synthase; Found in the gene: LotjaGi3g1v0099700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:12388946..12392871) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGACCAAGGGGTTCTGCCCTTATTTGTGGATATACCAATTATCATAGGCTGCTAGAGTCAAGCTTGGCAGATTTGAA AAACAAAGAGGTAAAGACAACTTTCAAGAACTCCTTAAACTGTTCTGGTTTTGTTATTAGCTCTGCTTTGTACCTTGACT AAAGAATACTTAATTGATGGTTATGATTAAACTTGGGAATCAAGAATCATATGCTGATATTTGCTACAATGGAATACTGT GAATTGACTCAGTGGACAAGTTTATGCATACTTGTAATTGGTCTTTTCTCCTAGTTTGAACATTACTTGATCTTAGTGAT TTAGTCAAGGATATGGAGAAAAAGTGGTGTCCATAGTGATATGCTTTGTTGATGTGGAAGAGAGTTCTGCAAAAGCTTGA AATACATTTATGGCTGGTTGAGTACTTGAGTTAGGGAAACTGTAATTATTTTGTCAATGTCCCTCACTATTTATAATTAT TGCTTCAATAAATGATCACATCTACTAATGGGTTGCTATTAATCGCACTAGAATCACCTATTTTTTCTCTGTCCACCTTC CTTCAATTGTGAGGAACTTATGGGCTACATTCTTCTGAGACTCATCTATTGTATAACGAATTGAATAACCGACCCATATG TGATAATAAGTCTTAATTGTATGAAATGCTGACCCATTTTTGGTTTAAAATCCATGCTATAGGATTGCCTTCTTTGTCCC ACAGGGTTTGCTGCTAATATGGCCTTCATGACAGCATTAGGAAGCATAGCTTCTCTCTTAGCTGGGAATAAATTACCTTC AGATGATGAAATGATTGCAGTATTTTCTGATGCATTAAACCATGCGTCAATAATTGATGGTCTTCGTCTTGCTGAGCGGC AAAAAGGTGTTAAAGTGTACATATATAAACATTGTGACATGTCGCACCTCAATGTGCTCTTGTAAGTATCTTTTACTGAA TTTTATATATTCCCCTTCTGGCAGTCTCTCCAAATATTAGCATTATTTTTATATCTATGATTTCAACAGATCTCAATGCA GAATGAGGAGGAAAGTTGTGGTGACTGACAGGTTAGTCATTTGCTTCTAGCAAAAGAGAACTGGAAAAATGATCAAGATT TGAAATAACTGGTGTTACCTGAATCTCAGTCTTTCACATAGCCTAAACACTATTTGCATGTTGGGTGCTGCATAAATTTT CTCCTACTTTTGTCTCTAGAAAATCTCTGGGTTGACAAATTTTTAAAAGTATATGAATTATGAAGAATTAGTCAATCCTA CATTATGACTTGAATTAGTGAATCATATTTTTAAGTTCCTTAATGACAAATTCCAATGCTACACTATCTTGTTATTTTTG TTTGTACTGCTGACAGCTATGACATTAACTTAATTCTTTGGATATAATTTTTCATGTGCATTATGGATCATCTGGTTTAT TGCAGTTTGTTTAGCATGGATGGAGACTATGCACCAATGGTTGAGCTTGCAGAACTTCGCAAGAAGCATGACTTTTTGTT AGTCATTGATGATGTAAGACCTCCCATATGTTTTAGCAAATGTCTTTTTCTTCATAAAGACTCTTATATGTTGTTATTTA CATGGTTCTGATCCTTGTATTAAGTTAATACTTAAGAAGATCTTAAGATAATATTCATAGAACAGTGATAGCATACCATC AACGTTCCTAGAAACGAACCACCCATTCACTCTACCATATACTGTCTTCCTGATTGAATGTTTATGTGATACAAGCAAAA TATGGCTTCTCTCCACTACAAAGTCTAGTGCAACTATAAACTGTGAAAATAAAACCTGCGTAATATGTGTATATCCAGGC TCATGGAACATTTGTTTGTGGACAAAACGGTGGTGGTGTTGCTGAGGAGTTCAACTGTGAAAAGGATGTTGACGTATGCA TTGGTACTCTAAGTAAAGCTGCTGGCTGCCATGGAGGATTTATAGCATGCAGGTAACCATTTGAGTGCACTTGCTCCTCA AATTAACTCTTTAACAGTAAGGAAGATTAGTTTCACGCTTTTCTAAGTTTCTGCACAACAATGTGTTAGGACTCTTCTGA ATTTTCCGGTTTCTATCACAATGGCACTACACTGTTTACATTTCATGAATAGTTCACCATTGACTTTTACTATTCTATGA ATTATTATAGCAAAAGCTGGAAGCTATTAATACAGTCAAGAGGTCGTTCATTCATATTTTCAACTGCTACACCAGTCCCA GTTGCTGCTGCTGCTCACGGTGAGCTCCAGTGTTGTTACTAGTTCCTATTTTTAAGTATTTATTGCTTGCCCTGGACCTT CATCTACATCAAGTTATATCACACAATTAAAACCATTCATGTGGTTCTTACCTAACAGCTTAAGCTCTTGGGATAATTGG TTTTTTGACATGATGTAGGAGCCTCTATGACCAAGCGATCTAGAGTTTGATCCTTGCCGCCCCCAATTCTTCTAATAAAA AGTTGAATATCAGCATATGGTAGGTGAGCTTGTGCATTGTCCACGCTTCAAGCTCAAATAGACTCTTGCGTGAGGGGGCG TGTGAGAAATGATAATATAAAACCATTCATGTGGCCCTTACCCAAAAGCTTAAGCTTTTGGGGTAATTGGTTGTCTGACA GTAACATCATCTTCTTATAATCCAGTGTAGTGTTATTTACCTGACTATTGCATTAAAAATGTTGCTCAGCCATGTAATTT GAACAGGGAAAGTGTTAAATTGGAACCACCTGAATTCTAATGCCGAAATTGATCCAAATATGCATATTTGTAAATACAAG AGTCATTTAGATAAGAGTTGGTAATTTTTATCTGATGCAAATGAAGAATTGTTCTGTACACCCATGATTATATTGTTGGT CTTCTACCTTTCTTGGAATGTTTGTTCAGAGATTCAAAATATATATTATCATTTCTCTTTCTTTTGCTTTAGCTCCAAAA ATCTTGTTGGAATCACTCATTTGTTAAAAATGCGATTTTCCAGCTGCTGTTGGAGTAGCAAAACTTGAGACATGGCGTAG AAAGGCTATATGGAACCGTGTGAAAGACTTTCATTCACTTACAGGAATCCCTGTTACAAGTCCCATTATATCTCTAATAG TAGGCAGTGAAGACAAAGCACTGCAAGCAAGCCGGTAAATTCCCACCACTCCCCTCCCTTTCTCTCTTATTTAATAATAG TTAAAATTAATTTCTGTGCCTTGATTTTTCAAGATCTCCCTCATTTAACTTCTCCACAGGGACTTATAAAATTACAAGTA CTATTTCTTAAGTTCGGAACCAAATATTTATTTTATTTGAAAAAGCTCCCATAAACTAGAATCTAATCAAACTGGGCATC AGAAGCTGATCTTGCATGCTTTGAAACACTAAGCATTTTTAGTCTGTCTTGAGCAGGTTTTTATTGCAATCTGGATTCCA CGTGACTGCAATCAGACCACCAACTGTGCCACCTAACTCTTGCAGGTTAGTATCCGTTATTTACTTGAATTTATACATGA CGGCTCAGGATCCTCTCACACATAAACTTCACATTACATTGTCATATTAAAATTTGATGTCTATCTCTCTGTTCATATGT ATTAAATAGGTGATACCTTTGAAATATTTATGAGGAGACAGATAGATACAATGTTTCACTTGACATTGTCATGTGACTTG GAAAGATTCTAATCCACAATATAAGAGTTAAATAGAACAAATTCTCAGTGTTCAATTAGCTATATTTGATTATATTGTTT CCATGTGTACATCTCTTATTTCTCATAATGTCTATTTAGGCTGCGAGTGACCCTAAGCGCAGTTCATACAAGGCAAGATT TGGAAAATCTCTCAGCTGCACTCTCCCGTTGCATAAATTTTCAGGACACCCGCATATATAGCAGCAATGGCTATGCAAGA TTGTAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0099700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGACCAAGGGGTTCTGCCCTTATTTGTGGATATACCAATTATCATAGGCTGCTAGAGTCAAGCTTGGCAGATTTGAA AAACAAAGAGGATTGCCTTCTTTGTCCCACAGGGTTTGCTGCTAATATGGCCTTCATGACAGCATTAGGAAGCATAGCTT CTCTCTTAGCTGGGAATAAATTACCTTCAGATGATGAAATGATTGCAGTATTTTCTGATGCATTAAACCATGCGTCAATA ATTGATGGTCTTCGTCTTGCTGAGCGGCAAAAAGGTGTTAAAGTGTACATATATAAACATTGTGACATGTCGCACCTCAA TGTGCTCTTATCTCAATGCAGAATGAGGAGGAAAGTTGTGGTGACTGACAGTTTGTTTAGCATGGATGGAGACTATGCAC CAATGGTTGAGCTTGCAGAACTTCGCAAGAAGCATGACTTTTTGTTAGTCATTGATGATGCTCATGGAACATTTGTTTGT GGACAAAACGGTGGTGGTGTTGCTGAGGAGTTCAACTGTGAAAAGGATGTTGACGTATGCATTGGTACTCTAAGTAAAGC TGCTGGCTGCCATGGAGGATTTATAGCATGCAGCAAAAGCTGGAAGCTATTAATACAGTCAAGAGGTCGTTCATTCATAT TTTCAACTGCTACACCAGTCCCAGTTGCTGCTGCTGCTCACGCTGCTGTTGGAGTAGCAAAACTTGAGACATGGCGTAGA AAGGCTATATGGAACCGTGTGAAAGACTTTCATTCACTTACAGGAATCCCTGTTACAAGTCCCATTATATCTCTAATAGT AGGCAGTGAAGACAAAGCACTGCAAGCAAGCCGGTTTTTATTGCAATCTGGATTCCACGTGACTGCAATCAGACCACCAA CTGTGCCACCTAACTCTTGCAGGCTGCGAGTGACCCTAAGCGCAGTTCATACAAGGCAAGATTTGGAAAATCTCTCAGCT GCACTCTCCCGTTGCATAAATTTTCAGGACACCCGCATATATAGCAGCAATGGCTATGCAAGATTGTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0099700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGPRGSALICGYTNYHRLLESSLADLKNKEDCLLCPTGFAANMAFMTALGSIASLLAGNKLPSDDEMIAVFSDALNHASI IDGLRLAERQKGVKVYIYKHCDMSHLNVLLSQCRMRRKVVVTDSLFSMDGDYAPMVELAELRKKHDFLLVIDDAHGTFVC GQNGGGVAEEFNCEKDVDVCIGTLSKAAGCHGGFIACSKSWKLLIQSRGRSFIFSTATPVPVAAAAHAAVGVAKLETWRR KAIWNRVKDFHSLTGIPVTSPIISLIVGSEDKALQASRFLLQSGFHVTAIRPPTVPPNSCRLRVTLSAVHTRQDLENLSA ALSRCINFQDTRIYSSNGYARL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13693:SF89
1 325 325 6.4E-160 –
PANTHER
PTHR13693
1 325 325 6.4E-160 –
Gene3D
G3DSA:3.40.640.10
2 236 235 1.4E-100
IPR015421
SUPERFAMILY
SSF53383
2 326 325 8.2E-75
IPR015424
Pfam
PF00155
6 321 316 1.5E-40
IPR004839
Gene3D
G3DSA:3.90.1150.10
237 313 77 1.4E-100
IPR015422

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0099700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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