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LotjaGi3g1v0099700.5

Overview

Field Value
Gene ID LotjaGi3g1v0099700
Transcript ID LotjaGi3g1v0099700.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description 8-amino-7-oxononanoate synthase; TAIR: AT5G04620.2 biotin F; Swiss-Prot: sp|Q8GW43|BIOF_ARATH 8-amino-7-oxononanoate synthase; TrEMBL-Plants: tr|I1KFQ1|I1KFQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0099700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:12389427..12393691) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGATACCACATGGGTGTTGGGAAATGTGGGTCGAAGAGGCACTTGGGACACTTAATTCTCTCAAAGTACTTCGGTC TCTGAGACCCATTTGCCTCCGGAAGGATGAGCCACCTTCACATTGTCTGGAATCTGCGGTTGGTGAAGGTGCACTCCAGG TGTTCGATGAAATGCAGCAGTGGGATAGGTCATCTGTGGAAGTGGAGATGAGTGAGGCCACGTTTAGTAGATGGATGAAT GACACCCCAAGTTCTGGTACTGCTTTCAAATTACGTGTGTTTTATTATGGATTAATTAAAGGGTAAATAAAGGGTGTTTG TGAACCTTATTGGACATTACTATGCTTGTTACGAGAATTAAAAGATACTTGTAGGTATTATTGATTCCAAACAAAGCTAA ATACATAAGTTTTCCTTGCCTCACTTCATTCTTGTGACTTGCACAAATTGGGATTGCTTTGTTTTCTCAAGTTTGTTGGA ATATATATTGTGTTCTGTTCTGGTTACAGATGCTAATGTTACACCTTTTTTTTGGTATAGGTGATGACATTATTCATAGT GCAGTTGCTGGTGATGATGAACCAAGGGCATTTTGTGACAAGTTTAAAAAATTAATTTTGTTTTCCGGAAATGATTATCT AGGATTGAGTTCCCATCCGACTATTGGAAGGGCTGCTGCAAAGGTGTGTTTGTGAATTTGAAATAGTTTTTGGTTCTCTT CTGAGTTTTTATCTTTAGAGTCTTGTTTCTTCAGTTTTCTTAATTAAAGATAATTGCCATTATTTTTATTGTTCCAAATC AGGCAGCTCAAGAACATGGGATGGGACCAAGGGGTTCTGCCCTTATTTGTGGATATACCAATTATCATAGGCTGCTAGAG TCAAGCTTGGCAGATTTGAAAAACAAAGAGGTAAAGACAACTTTCAAGAACTCCTTAAACTGTTCTGGTTTTGTTATTAG CTCTGCTTTGTACCTTGACTAAAGAATACTTAATTGATGGTTATGATTAAACTTGGGAATCAAGAATCATATGCTGATAT TTGCTACAATGGAATACTGTGAATTGACTCAGTGGACAAGTTTATGCATACTTGTAATTGGTCTTTTCTCCTAGTTTGAA CATTACTTGATCTTAGTGATTTAGTCAAGGATATGGAGAAAAAGTGGTGTCCATAGTGATATGCTTTGTTGATGTGGAAG AGAGTTCTGCAAAAGCTTGAAATACATTTATGGCTGGTTGAGTACTTGAGTTAGGGAAACTGTAATTATTTTGTCAATGT CCCTCACTATTTATAATTATTGCTTCAATAAATGATCACATCTACTAATGGGTTGCTATTAATCGCACTAGAATCACCTA TTTTTTCTCTGTCCACCTTCCTTCAATTGTGAGGAACTTATGGGCTACATTCTTCTGAGACTCATCTATTGTATAACGAA TTGAATAACCGACCCATATGTGATAATAAGTCTTAATTGTATGAAATGCTGACCCATTTTTGGTTTAAAATCCATGCTAT AGGATTGCCTTCTTTGTCCCACAGGGTTTGCTGCTAATATGGCCTTCATGACAGCATTAGGAAGCATAGCTTCTCTCTTA GCTGGGAATAAATTACCTTCAGATGATGAAATGATTGCAGTATTTTCTGATGCATTAAACCATGCGTCAATAATTGATGG TCTTCGTCTTGCTGAGCGGCAAAAAGGTGTTAAAGTGTACATATATAAACATTGTGACATGTCGCACCTCAATGTGCTCT TGTAAGTATCTTTTACTGAATTTTATATATTCCCCTTCTGGCAGTCTCTCCAAATATTAGCATTATTTTTATATCTATGA TTTCAACAGATCTCAATGCAGAATGAGGAGGAAAGTTGTGGTGACTGACAGGTTAGTCATTTGCTTCTAGCAAAAGAGAA CTGGAAAAATGATCAAGATTTGAAATAACTGGTGTTACCTGAATCTCAGTCTTTCACATAGCCTAAACACTATTTGCATG TTGGGTGCTGCATAAATTTTCTCCTACTTTTGTCTCTAGAAAATCTCTGGGTTGACAAATTTTTAAAAGTATATGAATTA TGAAGAATTAGTCAATCCTACATTATGACTTGAATTAGTGAATCATATTTTTAAGTTCCTTAATGACAAATTCCAATGCT ACACTATCTTGTTATTTTTGTTTGTACTGCTGACAGCTATGACATTAACTTAATTCTTTGGATATAATTTTTCATGTGCA TTATGGATCATCTGGTTTATTGCAGTTTGTTTAGCATGGATGGAGACTATGCACCAATGGTTGAGCTTGCAGAACTTCGC AAGAAGCATGACTTTTTGTTAGTCATTGATGATGTAAGACCTCCCATATGTTTTAGCAAATGTCTTTTTCTTCATAAAGA CTCTTATATGTTGTTATTTACATGGTTCTGATCCTTGTATTAAGTTAATACTTAAGAAGATCTTAAGATAATATTCATAG AACAGTGATAGCATACCATCAACGTTCCTAGAAACGAACCACCCATTCACTCTACCATATACTGTCTTCCTGATTGAATG TTTATGTGATACAAGCAAAATATGGCTTCTCTCCACTACAAAGTCTAGTGCAACTATAAACTGTGAAAATAAAACCTGCG TAATATGTGTATATCCAGGCTCATGGAACATTTGTTTGTGGACAAAACGGTGGTGGTGTTGCTGAGGAGTTCAACTGTGA AAAGGATGTTGACGTATGCATTGGTACTCTAAGTAAAGCTGCTGGCTGCCATGGAGGATTTATAGCATGCAGGTAACCAT TTGAGTGCACTTGCTCCTCAAATTAACTCTTTAACAGTAAGGAAGATTAGTTTCACGCTTTTCTAAGTTTCTGCACAACA ATGTGTTAGGACTCTTCTGAATTTTCCGGTTTCTATCACAATGGCACTACACTGTTTACATTTCATGAATAGTTCACCAT TGACTTTTACTATTCTATGAATTATTATAGCAAAAGCTGGAAGCTATTAATACAGTCAAGAGGTCGTTCATTCATATTTT CAACTGCTACACCAGTCCCAGTTGCTGCTGCTGCTCACGGTGAGCTCCAGTGTTGTTACTAGTTCCTATTTTTAAGTATT TATTGCTTGCCCTGGACCTTCATCTACATCAAGTTATATCACACAATTAAAACCATTCATGTGGTTCTTACCTAACAGCT TAAGCTCTTGGGATAATTGGTTTTTTGACATGATGTAGGAGCCTCTATGACCAAGCGATCTAGAGTTTGATCCTTGCCGC CCCCAATTCTTCTAATAAAAAGTTGAATATCAGCATATGGTAGGTGAGCTTGTGCATTGTCCACGCTTCAAGCTCAAATA GACTCTTGCGTGAGGGGGCGTGTGAGAAATGATAATATAAAACCATTCATGTGGCCCTTACCCAAAAGCTTAAGCTTTTG GGGTAATTGGTTGTCTGACAGTAACATCATCTTCTTATAATCCAGTGTAGTGTTATTTACCTGACTATTGCATTAAAAAT GTTGCTCAGCCATGTAATTTGAACAGGGAAAGTGTTAAATTGGAACCACCTGAATTCTAATGCCGAAATTGATCCAAATA TGCATATTTGTAAATACAAGAGTCATTTAGATAAGAGTTGGTAATTTTTATCTGATGCAAATGAAGAATTGTTCTGTACA CCCATGATTATATTGTTGGTCTTCTACCTTTCTTGGAATGTTTGTTCAGAGATTCAAAATATATATTATCATTTCTCTTT CTTTTGCTTTAGCTCCAAAAATCTTGTTGGAATCACTCATTTGTTAAAAATGCGATTTTCCAGCTGCTGTTGGAGTAGCA AAACTTGAGACATGGCGTAGAAAGGCTATATGGAACCGTGTGAAAGACTTTCATTCACTTACAGGAATCCCTGTTACAAG TCCCATTATATCTCTAATAGTAGGCAGTGAAGACAAAGCACTGCAAGCAAGCCGGTAAATTCCCACCACTCCCCTCCCTT TCTCTCTTATTTAATAATAGTTAAAATTAATTTCTGTGCCTTGATTTTTCAAGATCTCCCTCATTTAACTTCTCCACAGG GACTTATAAAATTACAAGTACTATTTCTTAAGTTCGGAACCAAATATTTATTTTATTTGAAAAAGCTCCCATAAACTAGA ATCTAATCAAACTGGGCATCAGAAGCTGATCTTGCATGCTTTGAAACACTAAGCATTTTTAGTCTGTCTTGAGCAGGTTT TTATTGCAATCTGGATTCCACGTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0099700.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGATACCACATGGGTGTTGGGAAATGTGGGTCGAAGAGGCACTTGGGACACTTAATTCTCTCAAAGTACTTCGGTC TCTGAGACCCATTTGCCTCCGGAAGGATGAGCCACCTTCACATTGTCTGGAATCTGCGGTTGGTGAAGGTGCACTCCAGG TGTTCGATGAAATGCAGCAGTGGGATAGGTCATCTGTGGAAGTGGAGATGAGTGAGGCCACGTTTAGTAGATGGATGAAT GACACCCCAAGTTCTGGTGATGACATTATTCATAGTGCAGTTGCTGGTGATGATGAACCAAGGGCATTTTGTGACAAGTT TAAAAAATTAATTTTGTTTTCCGGAAATGATTATCTAGGATTGAGTTCCCATCCGACTATTGGAAGGGCTGCTGCAAAGG CAGCTCAAGAACATGGGATGGGACCAAGGGGTTCTGCCCTTATTTGTGGATATACCAATTATCATAGGCTGCTAGAGTCA AGCTTGGCAGATTTGAAAAACAAAGAGGATTGCCTTCTTTGTCCCACAGGGTTTGCTGCTAATATGGCCTTCATGACAGC ATTAGGAAGCATAGCTTCTCTCTTAGCTGGGAATAAATTACCTTCAGATGATGAAATGATTGCAGTATTTTCTGATGCAT TAAACCATGCGTCAATAATTGATGGTCTTCGTCTTGCTGAGCGGCAAAAAGGTGTTAAAGTGTACATATATAAACATTGT GACATGTCGCACCTCAATGTGCTCTTATCTCAATGCAGAATGAGGAGGAAAGTTGTGGTGACTGACAGTTTGTTTAGCAT GGATGGAGACTATGCACCAATGGTTGAGCTTGCAGAACTTCGCAAGAAGCATGACTTTTTGTTAGTCATTGATGATGCTC ATGGAACATTTGTTTGTGGACAAAACGGTGGTGGTGTTGCTGAGGAGTTCAACTGTGAAAAGGATGTTGACGTATGCATT GGTACTCTAAGTAAAGCTGCTGGCTGCCATGGAGGATTTATAGCATGCAGCAAAAGCTGGAAGCTATTAATACAGTCAAG AGGTCGTTCATTCATATTTTCAACTGCTACACCAGTCCCAGTTGCTGCTGCTGCTCACGCTGCTGTTGGAGTAGCAAAAC TTGAGACATGGCGTAGAAAGGCTATATGGAACCGTGTGAAAGACTTTCATTCACTTACAGGAATCCCTGTTACAAGTCCC ATTATATCTCTAATAGTAGGCAGTGAAGACAAAGCACTGCAAGCAAGCCGGGACTTATAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0099700.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEIPHGCWEMWVEEALGTLNSLKVLRSLRPICLRKDEPPSHCLESAVGEGALQVFDEMQQWDRSSVEVEMSEATFSRWMN DTPSSGDDIIHSAVAGDDEPRAFCDKFKKLILFSGNDYLGLSSHPTIGRAAAKAAQEHGMGPRGSALICGYTNYHRLLES SLADLKNKEDCLLCPTGFAANMAFMTALGSIASLLAGNKLPSDDEMIAVFSDALNHASIIDGLRLAERQKGVKVYIYKHC DMSHLNVLLSQCRMRRKVVVTDSLFSMDGDYAPMVELAELRKKHDFLLVIDDAHGTFVCGQNGGGVAEEFNCEKDVDVCI GTLSKAAGCHGGFIACSKSWKLLIQSRGRSFIFSTATPVPVAAAAHAAVGVAKLETWRRKAIWNRVKDFHSLTGIPVTSP IISLIVGSEDKALQASRDL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13693
8 419 412 4.3E-161 –
PANTHER
PTHR13693:SF89
8 419 412 4.3E-161 –
SUPERFAMILY
SSF53383
107 417 311 5.78E-70
IPR015424
Pfam
PF00155
109 416 308 3.7E-38
IPR004839
Gene3D
G3DSA:3.90.1150.10
113 419 307 2.1E-96
IPR015422
Gene3D
G3DSA:3.40.640.10
124 375 252 2.1E-96
IPR015421

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0099700.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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