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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0100600 |
| Transcript ID | LotjaGi3g1v0100600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein RESTRICTED TEV MOVEMENT 2; TAIR: AT5G04890.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|D9UBX6|RTM2B_ARATH Inactive protein RESTRICTED TEV MOVEMENT 2; TrEMBL-Plants: tr|K7LZA7|K7LZA7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0100600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12483285..12487149) extracted from Lotus japonicus Gifu genome v1.2.
CCTTATTAATTTATTAAAATTCTACTATTACCCTTATATATTTATAAAAACACTAAACCTATTTTTCATCACACTTACGT ATGCAGTTCCCGCCACACCGCTGCGCACCACAAGTATTAAAAATATTATATTAAGATGATAAATAACTTGAGTTAATAAA AATATTTAAAGTGATATTAATTTTAATATTAATATCATATAGATATTAATGTGAAAATAAAGTAATGTTAAATATAAAAA TAATTATACACGTATGTCCTTTTATGTCATTTTACAATTTCAGCTTGTTTAACAGCTAGTTTTTCCAAACACTTTTGTTT TAATCATGTAGCTTTTCAGTTTTCAGTTATCAGTTTTCAGCTAGCTTATCAGCTTTCAGCTATCAGCTAGCTTATAAGCT TTCAGCTAGCTTATCAGCTAAACATGCCAAACATAGCGTTGATATTCCGCCATCAAAATAAATTCTTGATCCAATAGCAT GTCCAATCCAGCCTAGACAAACATTGGACTGGAAGTAACAATGCATGATTAATTTAACAATATTATGACAACATAAATCA CTTTCCCCCCTCTTCATGGAACTTAAAGTGTATGAGCCAAACAAGGAACTTTCACTTTATTTATTAGAGAAGTTATACCT CACAATGACTAAGTGGAATTCATCAAGTTAGGTCACGTTTGAATCAAATTTGAAGTGGCCGAAAAGGATGACCTTCATTT TAAAGAAAACCCAACATAACAACAATCTCTCTTAAACTGTTCACTATAAATATAGGAACCAACAAATCCAATTCAAGTCA AGTTCCATTGTATATCATTAATTGCAATATAGTTTGCTGAAATTGAAAAACAAACAAGAAAAAATTAACAGTTGGAAATT AATCTCTACCATGTCATCTACAGATAAAGATGTGCAGGTGCAATGTGAAACACAGGAAACTCCAGAATCACACCTTCTGC TTGTTAATATTCCTGATGGTTTGTTATTTTATCTCATCAAATTTCATATTCTTATTCTTTTATGTATTTGAAACATCGCT TTTCTGAGTTTCCATTAAAAGAGTTTTACTTTCATTCATTTAGAAAACCATATCAGTATTTTTTGGGTAGAAACATTAAA AAATGCACATTGCCATGCATTATTCAATTACCTCTCCATAAAGAATTCGTTCATATGAGAAGTTGATGGATTTTGAAGTG GTCCACCAATTAACCACTATTAATATTCGTTAATATAGTAATAAAAAAATCGAATCAAATACAATTATTAGTAAATTACC GGTAGACCACTTCAAAATTGGTCCACCCTAGTCCCTACCGATACTTTTTAAAACTAATAGAAAATATTTTTAAAAAGTTA TTAAAATATGTTATTATTTTTATTGAATCATTTCTTTTATTTATTTTTGATAAGTGCATGTTGTTTCCTTTGATGTGCTT ATGCATAGGTTTTGCAAGAGAACATATTGGGGCTAAGGTTGAGTATGATTTTGGAAGGGTTAGAGTTTATGGTGAAAAAC CACTTGGAAATAACAAAAGCAGCCGTTTTGATGAAAGGTATAAAGTTCCAGCACACTGTGATATTAGCAGAGTTAGAGGA AGGTTTGATGGAAAAACCATCACCATCATAATGCCAAAGATTCCAGGCCTAGTCCCTGAAACAACTGAACAAGAACCACC CAAACCTGCAGTGCAAGAAACACAACCAAACCAAGGGAATGACAAGGATGAAACTCCTCAACAATCTGCAATTGGAGATG ATAAAGAAAAAGCCACTGCTTCTGAGGTGAAAGATCAAAAGGGTACTCAAGAAGGAACTTCTTCTGAGCAGGATCCAAAA TCAACAATTGAAGGTAAAGAAGAAGGTAAGGATCATGAGGCTTCAACTTCAACCTCGGCACCGGAAGCTACAGAAGAGTC TTTGCCTCAAAAGGGTACTCAAGAAGCAACCCCTCAGAATGCAACAGCTACAAGAGATGCCAAACTTCAAACAGAAGCAA AATCTGCTGATGAAAATAAGAAAAAGGAGAAGGCTGAGAAGGAAGAGTCTTTGCCTCAAAAGGGTACTCAAGAACCAACC CCTCAGAATGCAACAGCTACAAGAGATGCCAAACTTCAAACAGAAGCAAAATCTGCTGATGAAAATAAGAAAAAGGAGAA GGCTGAGAAGGAAGAGTCTTTGCCTCAAAAGGGTACTCAAGAACCAACCCCTCAGAATGCAACAGCTACAAGAGATGCCA AACTTCAAACAGAAGCAACATCTGTTGATGAAAATAAGGAAAAGGTTGAAAAAGAAGAAATTAAGGATAATCCTAATAAC AAGACTTCGGAGAAAGGAAATACACCTGAAGAAAAGGCTGTTGTGGCTGATTCCTCTCCTACCCCTGAAAAGGAAAGCAA GGAAGAAAGAAAAGAATCTTCCATGGTTGAAAGTTCTCTTCCAAAGAGTACAGAGAAAGTAAAAGGAAAGGAAATTAATG GTAAATCTGGTGCTGATGAAAATGAAACAAAGAGTGACAAGAAGGCCATGGTTGAATCAACAAGGACAAAAATCAAGGAG AAGGCTTCTTCTGCTTATCAAGCTCTTACTAGTATGACAAATAGGTTCAATGAAGAGGATAAACAAAAGCTGATATACAT GGGTGCTGCAGTTGTTGTTCTGACACTAAGTGTTTATGCTTCCTACAAGTTTCGTTCCTCGCGTAGACCATAGGCAATGA CACCATACCTGTTTTCTTTCACATGGTTTCTCATAGAAGTTTCGTTTCAATAATGACATATATTGTAGAACAAGCTTGCT AAACTCTACTCATGAATCATGATCAAGTTGTATTTCAGGGATGTAGTCCCCATGCTTGAATCAACGAAAAAAACAGATCA GGGAAGTTTGGAGATGTAAAAGCTATCGGGCAACTCATATATTTGATCAATAACTGAAAAATACATTGTGATTAACATTG TCTTTTGCATATATTGCTCCTAAACTTGTTTCTATGACTTTATGTTTATATGTAAAAAGCAATTGGAAACACTTTTTAAT GACTTTATGCAAACAGTTTTTCTTTCTCATGTTGAAAAATAAATGAAAATAGGAAAGGAAGAGTTAGTGGAACTATGCAT GTAGTGGGAGGGCTCAAGATCTTATATCCTCAAATGGTGTCTCAATTTCCTGTCCCACCAATGAAATCTTGTCACATCAA TCAAAAAACATATGAGTGAGCCAGTTACAAAATTACATGTTGATTTTCAACTGACATGCAAAAAAATTATTAGAGGGACA GGAAATTGATACCATGTGAGGACAGAAGATTTCAATCCGAAGTAGATGATAGGATACACTAGATATAACAGAATACTATT TGGTGAGAAGGCTTATGTACTTTTTACTAAAACTATGATGAATCTCATCATTCAAAATGAAGTTAGAGATTATTCTACTG CTCTAAATTTCTCAATTCTTCCAAGTAGATGAATTATCAAAACAAGATTACCTTCTATTGCTTCTAGCCATTTATCATTC CTGCATTCTCCAAATAGGTACACAGTATATTAAGATCCCTAAAAAGTAAGAGGCACATATTGTGATCATAGCATATGCAT ATGCTCTCCAAGGGTGCATGCTTTCTCTCATCGCATTGAACTCGGCAACAAAGGTAGAGACAGTACTCAAACAACCCAAC AGGCCAAACTGTATGCCTGTGATAATAGTATCACAATTCCTGGTGTCCACCTGCATCAGATCACAATCTCCATTATCATG ATATAGATTCTTGAATCTTTTTATATGAAATATATAATATCACAATAATAAATAATAAAGGAAGAGAAACATAAGAGTAA ATGGGCAAATAGCCACATTCCCCTG
CDS sequence (LotjaGi3g1v0100600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCTACAGATAAAGATGTGCAGGTGCAATGTGAAACACAGGAAACTCCAGAATCACACCTTCTGCTTGTTAATAT TCCTGATGGTTTTGCAAGAGAACATATTGGGGCTAAGGTTGAGTATGATTTTGGAAGGGTTAGAGTTTATGGTGAAAAAC CACTTGGAAATAACAAAAGCAGCCGTTTTGATGAAAGGTATAAAGTTCCAGCACACTGTGATATTAGCAGAGTTAGAGGA AGGTTTGATGGAAAAACCATCACCATCATAATGCCAAAGATTCCAGGCCTAGTCCCTGAAACAACTGAACAAGAACCACC CAAACCTGCAGTGCAAGAAACACAACCAAACCAAGGGAATGACAAGGATGAAACTCCTCAACAATCTGCAATTGGAGATG ATAAAGAAAAAGCCACTGCTTCTGAGGTGAAAGATCAAAAGGGTACTCAAGAAGGAACTTCTTCTGAGCAGGATCCAAAA TCAACAATTGAAGGTAAAGAAGAAGGTAAGGATCATGAGGCTTCAACTTCAACCTCGGCACCGGAAGCTACAGAAGAGTC TTTGCCTCAAAAGGGTACTCAAGAAGCAACCCCTCAGAATGCAACAGCTACAAGAGATGCCAAACTTCAAACAGAAGCAA AATCTGCTGATGAAAATAAGAAAAAGGAGAAGGCTGAGAAGGAAGAGTCTTTGCCTCAAAAGGGTACTCAAGAACCAACC CCTCAGAATGCAACAGCTACAAGAGATGCCAAACTTCAAACAGAAGCAAAATCTGCTGATGAAAATAAGAAAAAGGAGAA GGCTGAGAAGGAAGAGTCTTTGCCTCAAAAGGGTACTCAAGAACCAACCCCTCAGAATGCAACAGCTACAAGAGATGCCA AACTTCAAACAGAAGCAACATCTGTTGATGAAAATAAGGAAAAGGTTGAAAAAGAAGAAATTAAGGATAATCCTAATAAC AAGACTTCGGAGAAAGGAAATACACCTGAAGAAAAGGCTGTTGTGGCTGATTCCTCTCCTACCCCTGAAAAGGAAAGCAA GGAAGAAAGAAAAGAATCTTCCATGGTTGAAAGTTCTCTTCCAAAGAGTACAGAGAAAGTAAAAGGAAAGGAAATTAATG GTAAATCTGGTGCTGATGAAAATGAAACAAAGAGTGACAAGAAGGCCATGGTTGAATCAACAAGGACAAAAATCAAGGAG AAGGCTTCTTCTGCTTATCAAGCTCTTACTAGTATGACAAATAGGTTCAATGAAGAGGATAAACAAAAGCTGATATACAT GGGTGCTGCAGTTGTTGTTCTGACACTAAGTGTTTATGCTTCCTACAAGTTTCGTTCCTCGCGTAGACCATAG
Protein sequence (LotjaGi3g1v0100600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSTDKDVQVQCETQETPESHLLLVNIPDGFAREHIGAKVEYDFGRVRVYGEKPLGNNKSSRFDERYKVPAHCDISRVRG RFDGKTITIIMPKIPGLVPETTEQEPPKPAVQETQPNQGNDKDETPQQSAIGDDKEKATASEVKDQKGTQEGTSSEQDPK STIEGKEEGKDHEASTSTSAPEATEESLPQKGTQEATPQNATATRDAKLQTEAKSADENKKKEKAEKEESLPQKGTQEPT PQNATATRDAKLQTEAKSADENKKKEKAEKEESLPQKGTQEPTPQNATATRDAKLQTEATSVDENKEKVEKEEIKDNPNN KTSEKGNTPEEKAVVADSSPTPEKESKEERKESSMVESSLPKSTEKVKGKEINGKSGADENETKSDKKAMVESTRTKIKE KASSAYQALTSMTNRFNEEDKQKLIYMGAAVVVLTLSVYASYKFRSSRRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 114 | 114 | 10.312 | ||
| Phobius | 1 | 423 | 423 | - | – | |
| PANTHER | 6 | 159 | 154 | 2.1E-106 | – | |
| PANTHER | 6 | 159 | 154 | 2.1E-106 | – | |
| SUPERFAMILY | 11 | 98 | 88 | 5.75E-5 | ||
| CDD | 16 | 93 | 78 | 1.25088E-5 | – | |
| MobiDBLite | 93 | 404 | 312 | - | – | |
| MobiDBLite | 107 | 126 | 20 | - | – | |
| MobiDBLite | 127 | 144 | 18 | - | – | |
| PANTHER | 130 | 229 | 100 | 2.1E-106 | – | |
| PANTHER | 130 | 229 | 100 | 2.1E-106 | – | |
| MobiDBLite | 145 | 159 | 15 | - | – | |
| MobiDBLite | 160 | 175 | 16 | - | – | |
| MobiDBLite | 176 | 209 | 34 | - | – | |
| Coils | 206 | 228 | 23 | - | – | |
| MobiDBLite | 210 | 233 | 24 | - | – | |
| PANTHER | 226 | 272 | 47 | 2.1E-106 | – | |
| PANTHER | 226 | 272 | 47 | 2.1E-106 | – | |
| MobiDBLite | 234 | 252 | 19 | - | – | |
| Coils | 249 | 271 | 23 | - | – | |
| MobiDBLite | 253 | 276 | 24 | - | – | |
| PANTHER | 269 | 446 | 178 | 2.1E-106 | – | |
| PANTHER | 269 | 446 | 178 | 2.1E-106 | – | |
| MobiDBLite | 277 | 296 | 20 | - | – | |
| MobiDBLite | 297 | 356 | 60 | - | – | |
| MobiDBLite | 363 | 399 | 37 | - | – | |
| Phobius | 424 | 442 | 19 | - | – | |
| TMHMM | 425 | 442 | 18 | - | – | |
| Phobius | 443 | 450 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0100600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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