Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0100700 |
| Transcript ID | LotjaGi3g1v0100700.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retinoblastoma-binding protein 5; TAIR: AT3G21060.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q5E915|RBBP_ARATH Protein RBL; TrEMBL-Plants: tr|I3SQI4|I3SQI4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0100700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12492976..12495288) extracted from Lotus japonicus Gifu genome v1.2.
CCAGCTGGATGCAATGATGGAAGTTGTGTTATTTGGGATTTTATAACCAGGGGGATTGCTAAGGTGCTTTCTGATGATGG CTGCTCTTCTCCCATAACCAGTATCTGTTGGTCAAAATTTGGTCATCGAATTCTTGTATCTGCTGCTGATAAGTCATTAA CATTGTGGGATGTTATGAGTGGTAAAAAGATAACACGAATAGTTTTGCAACAAACCCCTCTACAAGCTCGTCTTCATCCA GGTTCCTCTACCCCATCTGTCTGCTTAACATGCCCTCTCTCTTGTGCACCAATGATTGTCGACCTGAATACGGGAAACAC AACTTTGCTTAAAGTTTCTGTCTCAGAGACATGCAATGGGCCAACACCTCCTCTACGCAATAAGTGCTCCGATGGGGTTA CCTCCTTCACACCAACTGCTGCTTGTTTTAATAAATATGGGAATCTGGTTTATGTGGGAAACTCAAAAGGGGAAATTCTC ATCAGTGATTACAAAGATGGCAAAGTGCGTGCCCTAGTTCCGACCTCGGGTGGTTCTGTCATAAAGAACATTGTCTTCAG CAGGAATGGACAGTATCTTCTTACGAATTCAAATGATCGAGTGATAAGGATCTATGAAAACCTTTTGCCTCTGAAAGGTG AAGTTAAAGCCCTTGATGACATGGGTGAGAACCTCACTGATCTAAGCAGTATTGAGGCTCTGAAGGCTGTTGGATCTAAA TGTTTAACTTTATTCCGGGAGTTTCAAGATTCCATCACAAAGGTGCACTGGAAAGCACCTGGTTTCAGTGGTGACGGTGA GTGGGTAGTTGGTGGTTCTGCTAGCAAAGGAGAGCACAAGATTTATGTATGGGATAGAGCTGGACATCTTGTCAAAATCC TTGAAGGACCTAAAGAAGCACTTGTAGATTTAGCATGGCATCCTGTACATCCTATTGTCGTATCTGTTTCGCTGAATGGC TTAGTTTATATATGGGCAAAAGACTATACTGAGAACTGGAGTGCATTTGCTCCTGATTTCAAAGAGCTCGAGGAAAATGA GGAGTATGTAGAGCGTGAAGATGAATTTGATCTGATTCCTGAGACTGAGAAGGTAAAAAGGGCATTACAATGGTCATGCA CTTCCTAATTTCTTTTCACCTGTCCTTTTCTTTTCTGACATCATATGCTTGCAGGTGAAAGGATCTGATATTAATGAAGA CGAGGAGGTTGACATTATGGAATTCGATAAAGATGCTGCTTTCAGTGATTCCGACATGTCTCAAGAAGAGCTGTGTTTCT TGCCAGCAACTCCTAGCCGGGATTCTCCTGAGCAGCAAGAGAAGTGTGTGGAAAGTTCTTCAAAATTGGTAGACAGCAAT AACACTGGATCCCCTCTTTCAGAAGAAGCAGGACCAAATGGACATGCGATGGATCACGCGTCAAGTCCTCTTGCAGGTAA CATCATGATGTGCATTATATGCTTATAACAAAGTATTTTAATTCTCAAGAACTCCAAATTCTAAACCCCTTCCCTCTAAT AAATAAACGGTATAACATAACACAAGCCATTCTCAATTCGAGATCAAACACGCCATAATGCCCTCATAAATCAAAGCTAA TAAATCATAATTTTGTGATTTTGCCATAAAATTTATCTCCTTGGTTTTAGTTTGGAATTTGCAACTTTCAACTACACTAA CTCTAATTTAAAAGAAATGGAAAATTTACATTTATGTTTGATGTGTTAGTTACAGTCTAGGGCCAAATAACATCTTAGAG TGATTATCATGTTTGGTCTCAATTGTGATTATAGCAATGAATGAGTTTCACTGTGTTACCAGTGGTTGATAGAGTTGTGA ATGTGTTGTGTATACATTTTTCTGATATGATTGTGACTCTTGTGAGGCCTTCTATAATAATATATATTTTTCTGTTTCAA AGATGATGCTGGAGGTCGCATGAAAAGAAAGCGGAAACCTTCAGAGAAGGTGTTGGAGTTGCAAGCAGAAAAAGTTAAGA AACCCTCAAAATCTAGCAAATCTGCAAAATCTAAGAGCAAACCTTCGGTTGATCAGGATGATGGTAATGGTTTTTATGGT GATGGGCTTTATGATGATTAATTGTAAAGCGTATTATATTGCTGCTGTAGGTATATTGCGCAAAATTCTGTATGAAATGA TATCATTTAGCACAATATGATTAGCTATGCGCTCTTTTGTCTTGTTAAAGGATTACAAATTTCAGCAAACTGTTGACACA AAAGTGCTTAGTTAAGTATGAGCAAAAAATAGCAATTGAAATTCATTGCAAACCTCTATTAAGCAAAGTAACT
CDS sequence (LotjaGi3g1v0100700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGGTAAAAAGATAACACGAATAGTTTTGCAACAAACCCCTCTACAAGCTCGTCTTCATCCAGGTTCCTCTACCCC ATCTGTCTGCTTAACATGCCCTCTCTCTTGTGCACCAATGATTGTCGACCTGAATACGGGAAACACAACTTTGCTTAAAG TTTCTGTCTCAGAGACATGCAATGGGCCAACACCTCCTCTACGCAATAAGTGCTCCGATGGGGTTACCTCCTTCACACCA ACTGCTGCTTGTTTTAATAAATATGGGAATCTGGTTTATGTGGGAAACTCAAAAGGGGAAATTCTCATCAGTGATTACAA AGATGGCAAAGTGCGTGCCCTAGTTCCGACCTCGGGTGGTTCTGTCATAAAGAACATTGTCTTCAGCAGGAATGGACAGT ATCTTCTTACGAATTCAAATGATCGAGTGATAAGGATCTATGAAAACCTTTTGCCTCTGAAAGGTGAAGTTAAAGCCCTT GATGACATGGGTGAGAACCTCACTGATCTAAGCAGTATTGAGGCTCTGAAGGCTGTTGGATCTAAATGTTTAACTTTATT CCGGGAGTTTCAAGATTCCATCACAAAGGTGCACTGGAAAGCACCTGGTTTCAGTGGTGACGGTGAGTGGGTAGTTGGTG GTTCTGCTAGCAAAGGAGAGCACAAGATTTATGTATGGGATAGAGCTGGACATCTTGTCAAAATCCTTGAAGGACCTAAA GAAGCACTTGTAGATTTAGCATGGCATCCTGTACATCCTATTGTCGTATCTGTTTCGCTGAATGGCTTAGTTTATATATG GGCAAAAGACTATACTGAGAACTGGAGTGCATTTGCTCCTGATTTCAAAGAGCTCGAGGAAAATGAGGAGTATGTAGAGC GTGAAGATGAATTTGATCTGATTCCTGAGACTGAGAAGGTGAAAGGATCTGATATTAATGAAGACGAGGAGGTTGACATT ATGGAATTCGATAAAGATGCTGCTTTCAGTGATTCCGACATGTCTCAAGAAGAGCTGTGTTTCTTGCCAGCAACTCCTAG CCGGGATTCTCCTGAGCAGCAAGAGAAGTGTGTGGAAAGTTCTTCAAAATTGGTAGACAGCAATAACACTGGATCCCCTC TTTCAGAAGAAGCAGGACCAAATGGACATGCGATGGATCACGCGTCAAGTCCTCTTGCAGATGATGCTGGAGGTCGCATG AAAAGAAAGCGGAAACCTTCAGAGAAGGTGTTGGAGTTGCAAGCAGAAAAAGTTAAGAAACCCTCAAAATCTAGCAAATC TGCAAAATCTAAGAGCAAACCTTCGGTTGATCAGGATGATGGTATATTGCGCAAAATTCTGTATGAAATGGATTACAAAT TTCAGCAAACTGTTGACACAAAAGTGCTTAGTTAA
Protein sequence (LotjaGi3g1v0100700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGKKITRIVLQQTPLQARLHPGSSTPSVCLTCPLSCAPMIVDLNTGNTTLLKVSVSETCNGPTPPLRNKCSDGVTSFTP TAACFNKYGNLVYVGNSKGEILISDYKDGKVRALVPTSGGSVIKNIVFSRNGQYLLTNSNDRVIRIYENLLPLKGEVKAL DDMGENLTDLSSIEALKAVGSKCLTLFREFQDSITKVHWKAPGFSGDGEWVVGGSASKGEHKIYVWDRAGHLVKILEGPK EALVDLAWHPVHPIVVSVSLNGLVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPETEKVKGSDINEDEEVDI MEFDKDAAFSDSDMSQEELCFLPATPSRDSPEQQEKCVESSSKLVDSNNTGSPLSEEAGPNGHAMDHASSPLADDAGGRM KRKRKPSEKVLELQAEKVKKPSKSSKSAKSKSKPSVDQDDGILRKILYEMDYKFQQTVDTKVLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 429 | 428 | 1.8E-141 | ||
| Gene3D | 16 | 160 | 145 | 9.1E-9 | ||
| SMART | 64 | 105 | 42 | 490.0 | ||
| SUPERFAMILY | 73 | 272 | 200 | 3.4E-23 | – | |
| SMART | 107 | 148 | 42 | 0.68 | ||
| Gene3D | 162 | 377 | 216 | 1.7E-9 | ||
| SMART | 180 | 227 | 48 | 110.0 | ||
| Pfam | 182 | 227 | 46 | 0.16 | ||
| SMART | 229 | 268 | 40 | 0.0028 | ||
| MobiDBLite | 343 | 442 | 100 | - | – | |
| MobiDBLite | 347 | 376 | 30 | - | – | |
| MobiDBLite | 396 | 423 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Set1C/COMPASS complex | A conserved protein complex that catalyzes methylation of histone H3. In Saccharomyces the complex contains Shg1p, Sdc1p, Swd1p, Swd2p, Swd3p, Spp1p, Bre2p, and the trithorax-related Set1p; in mammals it contains the catalytic subunit (SETD1A or SETD1B), WDR5, WDR82, RBBP5, ASH2L/ASH2, CXXC1/CFP1, HCFC1 and DPY30. |
Expression pattern of LotjaGi3g1v0100700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…