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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0100700 |
Transcript ID | LotjaGi3g1v0100700.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Retinoblastoma-binding protein 5; TAIR: AT3G21060.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q5E915|RBBP_ARATH Protein RBL; TrEMBL-Plants: tr|I3SQI4|I3SQI4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0100700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12493034..12495327) extracted from Lotus japonicus Gifu genome v1.2.
GTCAATTTTCTCATATTTGATCTTATTTTTTCAACTGAACCAGCTGGATGCAATGATGGAAGTTGTGTTATTTGGGATTT TATAACCAGGGGGATTGCTAAGGTGCTTTCTGATGATGGCTGCTCTTCTCCCATAACCAGTATCTGTTGGTCAAAATTTG GTCATCGAATTCTTGTATCTGCTGCTGATAAGTCATTAACATTGTGGGATGTTATGAGTGGTAAAAAGATAACACGAATA GTTTTGCAACAAACCCCTCTACAAGCTCGTCTTCATCCAGGTTCCTCTACCCCATCTGTCTGCTTAACATGCCCTCTCTC TTGTGCACCAATGATTGTCGACCTGAATACGGGAAACACAACTTTGCTTAAAGTTTCTGTCTCAGAGACATGCAATGGGC CAACACCTCCTCTACGCAATAAGTGCTCCGATGGGGTTACCTCCTTCACACCAACTGCTGCTTGTTTTAATAAATATGGG AATCTGGTTTATGTGGGAAACTCAAAAGGGGAAATTCTCATCAGTGATTACAAAGATGGCAAAGTGCGTGCCCTAGTTCC GACCTCGGGTGGTTCTGTCATAAAGAACATTGTCTTCAGCAGGAATGGACAGTATCTTCTTACGAATTCAAATGATCGAG TGATAAGGATCTATGAAAACCTTTTGCCTCTGAAAGGTGAAGTTAAAGCCCTTGATGACATGGGTGAGAACCTCACTGAT CTAAGCAGTATTGAGGCTCTGAAGGCTGTTGGATCTAAATGTTTAACTTTATTCCGGGAGTTTCAAGATTCCATCACAAA GGTGCACTGGAAAGCACCTGGTTTCAGTGGTGACGGTGAGTGGGTAGTTGGTGGTTCTGCTAGCAAAGGAGAGCACAAGA TTTATGTATGGGATAGAGCTGGACATCTTGTCAAAATCCTTGAAGGACCTAAAGAAGCACTTGTAGATTTAGCATGGCAT CCTGTACATCCTATTGTCGTATCTGTTTCGCTGAATGGCTTAGTTTATATATGGGCAAAAGACTATACTGAGAACTGGAG TGCATTTGCTCCTGATTTCAAAGAGCTCGAGGAAAATGAGGAGTATGTAGAGCGTGAAGATGAATTTGATCTGATTCCTG AGACTGAGAAGGTAAAAAGGGCATTACAATGGTCATGCACTTCCTAATTTCTTTTCACCTGTCCTTTTCTTTTCTGACAT CATATGCTTGCAGGTGAAAGGATCTGATATTAATGAAGACGAGGAGGTTGACATTATGGAATTCGATAAAGATGCTGCTT TCAGTGATTCCGACATGTCTCAAGAAGAGCTGTGTTTCTTGCCAGCAACTCCTAGCCGGGATTCTCCTGAGCAGCAAGAG AAGTGTGTGGAAAGTTCTTCAAAATTGGTAGACAGCAATAACACTGGATCCCCTCTTTCAGAAGAAGCAGGACCAAATGG ACATGCGATGGATCACGCGTCAAGTCCTCTTGCAGGTAACATCATGATGTGCATTATATGCTTATAACAAAGTATTTTAA TTCTCAAGAACTCCAAATTCTAAACCCCTTCCCTCTAATAAATAAACGGTATAACATAACACAAGCCATTCTCAATTCGA GATCAAACACGCCATAATGCCCTCATAAATCAAAGCTAATAAATCATAATTTTGTGATTTTGCCATAAAATTTATCTCCT TGGTTTTAGTTTGGAATTTGCAACTTTCAACTACACTAACTCTAATTTAAAAGAAATGGAAAATTTACATTTATGTTTGA TGTGTTAGTTACAGTCTAGGGCCAAATAACATCTTAGAGTGATTATCATGTTTGGTCTCAATTGTGATTATAGCAATGAA TGAGTTTCACTGTGTTACCAGTGGTTGATAGAGTTGTGAATGTGTTGTGTATACATTTTTCTGATATGATTGTGACTCTT GTGAGGCCTTCTATAATAATATATATTTTTCTGTTTCAAAGATGATGCTGGAGGTCGCATGAAAAGAAAGCGGAAACCTT CAGAGAAGGTGTTGGAGTTGCAAGCAGAAAAAGTTAAGAAACCCTCAAAATCTAGCAAATCTGCAAAATCTAAGAGCAAA CCTTCGGTTGATCAGGATGATGGTAATGGTTTTTATGGTGATGGGCTTTATGATGATTAATTGTAAAGCGTATTATATTG CTGCTGTAGGTATATTGCGCAAAATTCTGTATGAAATGATATCATTTAGCACAATATGATTAGCTATGCGCTCTTTTGTC TTGTTAAAGGATTACAAATTTCAGCAAACTGTTGACACAAAAGTGCTTAGTTAA
CDS sequence (LotjaGi3g1v0100700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGGTAAAAAGATAACACGAATAGTTTTGCAACAAACCCCTCTACAAGCTCGTCTTCATCCAGGTTCCTCTACCCC ATCTGTCTGCTTAACATGCCCTCTCTCTTGTGCACCAATGATTGTCGACCTGAATACGGGAAACACAACTTTGCTTAAAG TTTCTGTCTCAGAGACATGCAATGGGCCAACACCTCCTCTACGCAATAAGTGCTCCGATGGGGTTACCTCCTTCACACCA ACTGCTGCTTGTTTTAATAAATATGGGAATCTGGTTTATGTGGGAAACTCAAAAGGGGAAATTCTCATCAGTGATTACAA AGATGGCAAAGTGCGTGCCCTAGTTCCGACCTCGGGTGGTTCTGTCATAAAGAACATTGTCTTCAGCAGGAATGGACAGT ATCTTCTTACGAATTCAAATGATCGAGTGATAAGGATCTATGAAAACCTTTTGCCTCTGAAAGGTGAAGTTAAAGCCCTT GATGACATGGGTGAGAACCTCACTGATCTAAGCAGTATTGAGGCTCTGAAGGCTGTTGGATCTAAATGTTTAACTTTATT CCGGGAGTTTCAAGATTCCATCACAAAGGTGCACTGGAAAGCACCTGGTTTCAGTGGTGACGGTGAGTGGGTAGTTGGTG GTTCTGCTAGCAAAGGAGAGCACAAGATTTATGTATGGGATAGAGCTGGACATCTTGTCAAAATCCTTGAAGGACCTAAA GAAGCACTTGTAGATTTAGCATGGCATCCTGTACATCCTATTGTCGTATCTGTTTCGCTGAATGGCTTAGTTTATATATG GGCAAAAGACTATACTGAGAACTGGAGTGCATTTGCTCCTGATTTCAAAGAGCTCGAGGAAAATGAGGAGTATGTAGAGC GTGAAGATGAATTTGATCTGATTCCTGAGACTGAGAAGGTGAAAGGATCTGATATTAATGAAGACGAGGAGGTTGACATT ATGGAATTCGATAAAGATGCTGCTTTCAGTGATTCCGACATGTCTCAAGAAGAGCTGTGTTTCTTGCCAGCAACTCCTAG CCGGGATTCTCCTGAGCAGCAAGAGAAGTGTGTGGAAAGTTCTTCAAAATTGGTAGACAGCAATAACACTGGATCCCCTC TTTCAGAAGAAGCAGGACCAAATGGACATGCGATGGATCACGCGTCAAGTCCTCTTGCAGATGATGCTGGAGGTCGCATG AAAAGAAAGCGGAAACCTTCAGAGAAGGTGTTGGAGTTGCAAGCAGAAAAAGTTAAGAAACCCTCAAAATCTAGCAAATC TGCAAAATCTAAGAGCAAACCTTCGGTTGATCAGGATGATGGTATATTGCGCAAAATTCTGTATGAAATGGATTACAAAT TTCAGCAAACTGTTGACACAAAAGTGCTTAGTTAA
Protein sequence (LotjaGi3g1v0100700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGKKITRIVLQQTPLQARLHPGSSTPSVCLTCPLSCAPMIVDLNTGNTTLLKVSVSETCNGPTPPLRNKCSDGVTSFTP TAACFNKYGNLVYVGNSKGEILISDYKDGKVRALVPTSGGSVIKNIVFSRNGQYLLTNSNDRVIRIYENLLPLKGEVKAL DDMGENLTDLSSIEALKAVGSKCLTLFREFQDSITKVHWKAPGFSGDGEWVVGGSASKGEHKIYVWDRAGHLVKILEGPK EALVDLAWHPVHPIVVSVSLNGLVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPETEKVKGSDINEDEEVDI MEFDKDAAFSDSDMSQEELCFLPATPSRDSPEQQEKCVESSSKLVDSNNTGSPLSEEAGPNGHAMDHASSPLADDAGGRM KRKRKPSEKVLELQAEKVKKPSKSSKSAKSKSKPSVDQDDGILRKILYEMDYKFQQTVDTKVLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 429 | 428 | 1.8E-141 | ||
Gene3D | 16 | 160 | 145 | 9.1E-9 | ||
SMART | 64 | 105 | 42 | 490.0 | ||
SUPERFAMILY | 73 | 272 | 200 | 3.4E-23 | – | |
SMART | 107 | 148 | 42 | 0.68 | ||
Gene3D | 162 | 377 | 216 | 1.7E-9 | ||
SMART | 180 | 227 | 48 | 110.0 | ||
Pfam | 182 | 227 | 46 | 0.16 | ||
SMART | 229 | 268 | 40 | 0.0028 | ||
MobiDBLite | 343 | 442 | 100 | - | – | |
MobiDBLite | 347 | 376 | 30 | - | – | |
MobiDBLite | 396 | 423 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Cellular component | Set1C/COMPASS complex | A conserved protein complex that catalyzes methylation of histone H3. In Saccharomyces the complex contains Shg1p, Sdc1p, Swd1p, Swd2p, Swd3p, Spp1p, Bre2p, and the trithorax-related Set1p; in mammals it contains the catalytic subunit (SETD1A or SETD1B), WDR5, WDR82, RBBP5, ASH2L/ASH2, CXXC1/CFP1, HCFC1 and DPY30. |
Expression pattern of LotjaGi3g1v0100700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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