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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0105400 |
| Transcript ID | LotjaGi3g1v0105400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat-containing protein; TAIR: AT5G35810.1 Ankyrin repeat family protein; Swiss-Prot: sp|A2CIR5|NPR4_ORYSJ Ankyrin repeat-containing protein NPR4; TrEMBL-Plants: tr|A0A0B2R153|A0A0B2R153_GLYSO Ankyrin repeat-containing protein; Found in the gene: LotjaGi3g1v0105400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13074827..13079665) extracted from Lotus japonicus Gifu genome v1.2.
CTCGACAACATAACCTAAACTCCCGTTTAGACTAGCACTAAAACCAAATTATTCCCCTTAACACAGAATTATTATTTTTA CAACTTTACTAGACAATAAAACCAAATCTCACTTAATCATGATATGAGAGGGACAAGAACTTAGTTAAGTCTTTTATCTA ACTATTTGACTAATGGTATGGACCAAAATGCAAGTTTGTTTCATAGATTTGTGTCCATGAAATGAAACCAGAGTCGAAAC AACATTTTCAAAAAAGAAGGCCGTAATGAGCAGACTACAACAACAAGCTCACTGACGACGACGAAGTCATCTTCATCCTC TTAATCTTCCCTCTTCGGTCTCTTTTCAATGGTTGAAGAGAGTGAAGCAGAAGAAAAGTAAGTACTTAGAGTTCAAGGTT TCTCCTTTCATTGCTTTGCTACCGATTCTGATTTCACTTTTTTTGTACTTGTTGCAGCCCCTTGGTTGTATCGGTGCCAA TACAAGATATAGATGAGTAAGTACATGTTCCAAATTTATGCTTGTTTTTATTGTTTATAGTTCAATTTCTTAGAGCATAT CCAATGCTAGGTTCTTAGTTGTTAGGCGCACTATTTATAATTCATGTGGACCCGTAATGCCACATATGCTTAAGCAACTA TTTACAGATTTTGCTCCAATCATAAGCTAATAGAGATGCTCTTAGTCTTACTGTGTTTTCACATATGCAATTGATTATTT TTAGAGTTTAATGGATATGCATCCTCTGTGTAAAAAGTTTTACATCGATAACAACACATAATGCCACGTAGGAGAAATAA TGACATTCATTTTAAATTTTAATTAAAAAATAAATATTTTCTGATGTAGCTGAATTTAATTGAATGACTGTGTAAATAAA GTTTATATTGACAATAGTGCACACACCTTTAATTCTTATTTTTATGCTTATAGAGGGATCATCTCTGTGTGGTAAAAGGG AATTTCTAAGGAAGCTAAAAAATTGAGAAGGACCCACTTTCTAGTACTAAGAGGTGTCTGACCTCATGCTCTTGAGTCTT GGCAGTTTCTGAGCTACTCGACTCAAGTTTTAGCCTGTTTGGATGCAGATCAAAGAGCACTTGTTGGAGCTTATTCAATG CAGTTTTGTAGTGGATAAGCTCAAGTAAGTGCTCTTTAGTTCATATCCAAACAGGAAGTTTTGACAATCCAGCAGCACAT TTAAGATCATATCTGTTACACTAATAAGTGTGGTTAATTCCTTTTCCAGCTCTGTGCTTTGCTATTAATGTTTGTAATGA AAGCAAGTTTGTCAGAAAAAAAATTCTTTCCTTGTAAGTATCAACTATCAAGTCAAAGCCATTTTTTCTCAACTAAAAAG TTGTTGTTGTCCCCTCCCCCTCAAAAAAGCAAGCCATAGTAAGGTCATGGCATGAAAGTTACTCACAGGATGCTTCATAA TTCATATGCATTCTTACTGTCACACTCTCTCATTGACTCTTCTAATCCCTTTAGCTGAAAGAGATGAAAAATATTTGTTG TAGAGGTAGAAAACTTCAGGAGTATAGAAATACAACGAATGCATAAACCATACTGTTTTTCTTAATGGGAATGAAGTGAA AAAGAAGCTGGATTCTTGCTTGGTTTGGACTTATGATGATTTATTTTCTTTGGTATCTGTTATGCATCTCCTCTAAGGTG GATAATTTTGGTATGAAGTTCGTACTCAGGAAGGCTTGTCTTGATAATTCTGTTATGAAGCAACAACTCTGTTCTCTTTA TCTTTCTTTCATTTTTTCTTAATACTTTCTGCAAGAAAAACCGTACAGGGAATTTTGGAGGTTGAATTCACTTCCAATGT CTAGAAGATCATTCATAGAAAATGGCAATCCATCCACTACCATTTTAGATGACACTAACGTTCAAGTTGTAATATCATCC GATCGGGTTTCCAGTTCCACACAAAGCCAGAAGCCATATCCAGGGGAAGCTACTCTCAACGCAGAGTTGGAAGAGTGTAA GTCACACTTGAAACTAATACTTTAACAAGCTTATATATACTCTTGATGAACATATTAACACAAACTATTGCAACCATGTA TGCAGTAATTTACACAGAAGACTTCAAAAGCACTAACTAGTCATGTAGCTTTTTTCCCATTACATGGCCTATTCAAAGAA ATTTATCTTCACACACGAAAAACCTCACAAAATATTTTCAAAATTAATGTGAAGTTCATTATGCATGGAAAAATTTATTA GGAAGGCATTTGTACATAATCACCACAGTAGGCTAATGATATCTATTGTTGCTTGTATACTATATGCCATTTCTTCTGTA ATTTCACCTTACATGCCACAATTGGCTGTAAATAAGTTTGATTAAAATAGATAAAACCAGAAAAGAAAAAGGAAACTGAT GCCAATGACTTTGCAGAGTCTAGAGTGGCACCATAAACAAGATAAGATTTTTGTATTGCAGGTTTCTTAAAACAAGAGCT GTGTTCACATGCACTCCAAAATTTGTGGCAACTAGCAAGATCCATTTTTGAAGAGTTTCCTGATCTGGTACGCATTCCAT TGACTGATAGTGGAGATACAGCTCTTCATGTTGCAGTGAGCGCAAAAAGCACTTTGTTTGTGAAAAAGCTGGTTGAGTTA GCACACATGACCCCGGAAGACATGGAAATACTGAATGCAGAAGGCAACACTGCGTTTTGCATGGCTGCAATTGCAGGGAA TAGTGAATTATTACAAATTATGATTAAAAAGAATGAAAAGTTGCCAGTGGTTTCTGGGCATGATGGGATGCTTCCAGTTC ACGTGGCTACTTTAGGTTGCTACCATGAAACTGTTCAAGATCTATCCTCTGACAGGCTCCTTCATTACATGGATTTCAAG GATATCAAGAGATTATTTTTCATGGCCATTAGTAGCTACATGTATGGTAAGACTACGGAACTTGATTCTCCATTTTGTAG AAGAAAAACAATGCTAACTGCAATATCATCTTGAAATGAATAATGAGTAGTACAGTAAAGAGTATTGCTTTTCTTTTCAA AATAATAAATAGTATTGCTAACCTGTTTAATGGACATTTCACCTTACTCTAATATTCTGTGTGTTCCTATGTTTCATCTT GGCTCTAACATGCTTTATATGGTTCAAACTATATAACAGATGTGGCAACGAAATTAGTCGAGAAATATCCAAAGCCTTTG AGCATTGCAAGAGATGATGAAGAGAATCTAACAGCTTTGCATATGCTGGCGCGAAAGCCTTTAGAAGAATTTTGTTAGTT CTTCATTCTTTCATATAGCTATTTTTCTTCCTTTCTTTTTGAAATTTATATTATTGGCTTATTGAAATTATATATAAAAA TTTGTATAAAGTGCTTTTAGAAGTTCTATAATTTTTGCCTGTTAAACATTTCTTCTCCTTGACCTTGACCTTGACCTATT CAACTACACTCATTGCAAGACATGCAAGATAACAACTATGAAGAAGGTTCATCAAGACAAGGTCATCAACTGAGATTGCT GCGGAAGTTATGGGCACAAGTTAGACAATTAGAATACAAAAATAGATTGGAGTTGATAATTGAACCTTCAGTAGTACTGT TTGATGCAGTAAAATCAGGAAATGTTGATGTTGTGAAACAGCTTCTTTACATGAACCGTGAACTGTTGATTATAAAGGAC CCAAAAAATGGACAAAGCTTACTGCACATTGCTGTTTTATTTCGACAAAATAGCATCTTTGACTTCATACTTAGTATGGG GAATGCAAACCTTATAATACGAGCCGTGGATAAAGATCGTAACAATGTTCTACACCTTGCTGCACGTCAACTAGAAGAAG CATCATTAAATCTCAGACCAGACATTCGAATGCGAAGTGAGGTGGCGTGGTTTAAGGTAAACTTGCTCATTCTTATTAAT TGAAGTGTTCTTCTTTTCTTTATGTGTTACCATTATTAACATAAACTCTTTTGTTAATCATACACATATGTAGGGAGTGG AGCAGAGAGTTCCTCCTGAGCTAATGACGATGAGAAACAAACATGGCAAGACACCAAATGATATGTTTTATGCAAATCAT AAAAGGCTATCTGACGAAGTTAAAGATACAGCGAAAGGAGTATCCAACTCTGGTATGGTTGTGGCAACACTTATTGTTGC TGTTTCTTTTGCTGCAGCTCTGACTACTCCAGGTGATAAGACAAATGCTTGGTTTACTGTATTCATCATGGCAAATGCAG TTGCATTATTCACTTCGTCTTTATCTCTTGTCTCTTTCTTGTCAATATTCACTTCATCAAGATTCAGAGAAAGAGACTTC ATCATCTCACTATATCCAAGCTTGAAAATTGGGAAAATGTTGCTGCTTATCTCTGTGGTCACTATGGTCATAGCTTTTGC TGCAGCTTCCTTCTTGATTTTTGATCGCGTACATAAGTGGACTGCATATGTAGTGGCTTCATTAGGGCTTTTCACAATAA TTATGTTTTTAGTCTTAATTTTATACATAAGCGGAGTGACTGCAAATTAGTTGTGAAAAGCTGTTATTTAGCTAGGAAAT AGCTCTGTCGCTACTTGCAGCTAATTGGCAAGCATTTCACAGCCAATTACCTGATATTTCATTACACCACCAATCCTCAA TATATGATCATGTATCCAGTGAGTTACTAGCTAGGAACACTGGCAGGTGGAATGAATTCTGTGAATAGTCTATTCACTAA TAATCATGTTTTGTAATTTATGCTTGTGAAATAATCAAGGTTGTCCTTGAATTTGTGACTATTGTGTATAAAATATATTT TGAGTGTATTTTTTTGTGTGCAAATTGAGTGGATTTGAC
CDS sequence (LotjaGi3g1v0105400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGATAACAACTATGAAGAAGGTTCATCAAGACAAGGTCATCAACTGAGATTGCTGCGGAAGTTATGGGCACAAGT TAGACAATTAGAATACAAAAATAGATTGGAGTTGATAATTGAACCTTCAGTAGTACTGTTTGATGCAGTAAAATCAGGAA ATGTTGATGTTGTGAAACAGCTTCTTTACATGAACCGTGAACTGTTGATTATAAAGGACCCAAAAAATGGACAAAGCTTA CTGCACATTGCTGTTTTATTTCGACAAAATAGCATCTTTGACTTCATACTTAGTATGGGGAATGCAAACCTTATAATACG AGCCGTGGATAAAGATCGTAACAATGTTCTACACCTTGCTGCACGTCAACTAGAAGAAGCATCATTAAATCTCAGACCAG ACATTCGAATGCGAAGTGAGGTGGCGTGGTTTAAGGGAGTGGAGCAGAGAGTTCCTCCTGAGCTAATGACGATGAGAAAC AAACATGGCAAGACACCAAATGATATGTTTTATGCAAATCATAAAAGGCTATCTGACGAAGTTAAAGATACAGCGAAAGG AGTATCCAACTCTGGTATGGTTGTGGCAACACTTATTGTTGCTGTTTCTTTTGCTGCAGCTCTGACTACTCCAGGTGATA AGACAAATGCTTGGTTTACTGTATTCATCATGGCAAATGCAGTTGCATTATTCACTTCGTCTTTATCTCTTGTCTCTTTC TTGTCAATATTCACTTCATCAAGATTCAGAGAAAGAGACTTCATCATCTCACTATATCCAAGCTTGAAAATTGGGAAAAT GTTGCTGCTTATCTCTGTGGTCACTATGGTCATAGCTTTTGCTGCAGCTTCCTTCTTGATTTTTGATCGCGTACATAAGT GGACTGCATATGTAGTGGCTTCATTAGGGCTTTTCACAATAATTATGTTTTTAGTCTTAATTTTATACATAAGCGGAGTG ACTGCAAATTAG
Protein sequence (LotjaGi3g1v0105400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQDNNYEEGSSRQGHQLRLLRKLWAQVRQLEYKNRLELIIEPSVVLFDAVKSGNVDVVKQLLYMNRELLIIKDPKNGQSL LHIAVLFRQNSIFDFILSMGNANLIIRAVDKDRNNVLHLAARQLEEASLNLRPDIRMRSEVAWFKGVEQRVPPELMTMRN KHGKTPNDMFYANHKRLSDEVKDTAKGVSNSGMVVATLIVAVSFAAALTTPGDKTNAWFTVFIMANAVALFTSSLSLVSF LSIFTSSRFRERDFIISLYPSLKIGKMLLLISVVTMVIAFAAASFLIFDRVHKWTAYVVASLGLFTIIMFLVLILYISGV TAN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 191 | 191 | - | – | |
| PANTHER | 12 | 313 | 302 | 1.7E-59 | – | |
| PANTHER | 12 | 313 | 302 | 1.7E-59 | – | |
| Gene3D | 22 | 180 | 159 | 4.5E-10 | ||
| ProSiteProfiles | 41 | 122 | 82 | 10.498 | ||
| Pfam | 46 | 123 | 78 | 8.2E-7 | ||
| SUPERFAMILY | 46 | 122 | 77 | 2.1E-8 | ||
| TMHMM | 187 | 209 | 23 | - | – | |
| Pfam | 188 | 286 | 99 | 8.3E-11 | ||
| Phobius | 192 | 211 | 20 | - | – | |
| Phobius | 212 | 216 | 5 | - | – | |
| Phobius | 217 | 246 | 30 | - | – | |
| TMHMM | 222 | 244 | 23 | - | – | |
| Phobius | 247 | 266 | 20 | - | – | |
| TMHMM | 265 | 287 | 23 | - | – | |
| Phobius | 267 | 288 | 22 | - | – | |
| Phobius | 289 | 293 | 5 | - | – | |
| Phobius | 294 | 317 | 24 | - | – | |
| TMHMM | 297 | 319 | 23 | - | – | |
| Phobius | 318 | 323 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0105400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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