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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0115800 |
| Transcript ID | LotjaGi3g1v0115800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRAS family transcription factor; TAIR: AT1G50420.1 scarecrow-like 3; Swiss-Prot: sp|Q9LPR8|SCL3_ARATH Scarecrow-like protein 3; TrEMBL-Plants: tr|V7BVF7|V7BVF7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0115800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14179211..14182376) extracted from Lotus japonicus Gifu genome v1.2.
CTTGAGTGAAGTTTATTGTAGGACATGTTGATCATGCATATAAGTCCAATTGATGTGTAGTATTCAAAGAGCTAGAAGGC ATAGAAAAATATTATTTTTTGCATAGTGACCCTAAGATATTGCAACCACTTCCAATGTGAGAATTTGCGCATAAAACATA CACTTGCACATCAATCTCAACCATTTCCTTGTCTTCACCTTTGTCCAACACATCAATCTCAACCATTCCCTTGTGAGACC TTTGTCCAAAGAAAGTGGAGGAGCTAGGTTTCAGCATGAATCCAATATAGTTTTGGAGGACCTTCCTAAGATTTACCTTG CAATGCTCATCATCATCAACAACTAAGAAACAAGCAATGAATAATTGAATATGCTTATATATACAAATAGACAATTATGG GTTGAAACGGCTCTGCATCTCAGAAATTCCATATTCCTCTGCTGCACCTGAAGGATGACAAATTAGAGGTGACAAAATCA ATCACTTTCTCTTGTCCATTCTGTCTAAATACTTCCAAGACAAAAGCTTCAATTCAATTGACTTGGTCTGTATAAAACCC CACATGACATACACTCTAGAGCTTTGCACTTAGCCTGGGAACATTAGAACCTTTCTTTGGCTGCTCTTAGAGGCCTTTGG CCTAACCAAGATCACCGGCTGTAAATTTTTTGAAGTTGTAGGTGTTCTTGATCAGTTGTCTAAGGTTCACCTTATGGAGT CAGGTAAAATATACTCATTGGCTACTTTTTTTTTCACTCTATTATTCAATAAATTCATGGCTAAACAAAATGTTTGATAG AAAAGGGCAGTTGGGTGCATTAAAGCTCCCGCTATGCGCGGATCCCACCACATAGCCTATTGTATGCCGCCTTACCTTGT TTTTTTTACACAAGAGGTTGTTTCCAGGACTAGAACCCATGATTTCAATCACATGGAATCAACTTTTACTGTAGTGCAAA GGCTATACAAAACGCTGATTGCTGCATTAAAATTATATTAGAAGGACAAAAGCATAGAACCTATAAATGGTTCATATGCA TCACTTGGTTTAATAAAGGAAAAGATTATTCAGTTGTTGTTAAAAATTTAAGCCCATCAAAGCAATAAATGAAAAAGAAA AAAGATCAAGGCCTAACATTGTGAGAAGTGAGTGAAATTTGATGCTTTTGAGTGGAACGGACATATTTTGTTTACTTATG CTAATTCAGCTGCTTTGGACCAGGTTCACCATATCAGTGGATGAGGGAGCTGAGATATGACTCCCAAGGATTAAAAAACC CAATAAGCCTTCTTATTGAGTGCGCTAAATGCGTCGCATCTGGAAGCATCAAGAATGCAGATATAGGACTTGAGCTCATT TCTCAGATTTCATCTCCTGATGGTGATGCAGTGCAAAGGATGGTCACTTATTTCAGTGAAGCACTTGGTTACAGGATAGT CAAACATTTACCTGGTGTATACAAAGCTCTCAATTCCTCGAAAACATCATCGTCTTCAGAAGACTTCCTTGTTCAGAAAT ACTTCTATGAACTTTGCCCCTTCCTGAAGTTTTCATACCTGATCACAAACCAAGCAATTGTAGAAGCTATGGAAAGTGAA AACTGGGTTCACATCATTGATCTTCATTGTTCTGAACCAGCTCAGTGGGTGAATCTTCTACTAACATTAAAAAACCGCCA TGGAGGCCCGCCCCATCTAAAAATCACAGGTATTCATGAAAAGAAAGAGGTATTAGACCAAATGAGTCTTCACTTGACAG CTGAAGCTGGGAATTTGGATTTCCCTTTACAGTTTAATCCAATTGTTAGCAAACTGGAAGATGTTGACTTTGAAAACTTG CCTGTGAAGACAGGTGAAGCTCTTGCAATCACTTCAGTTCTTCAGCTTCATTCTCTTCTTGCCACGGACGATGACATGAG TGGGAAGTTCTCGCCAGCCGGAGCGGCATCTATGAACCTGCAGAGAGCAGTGCACATGGGCCAGAGGACTTTTGCTGAGT GGCTTGAGAGAGACATGATCAATGCATATATTTTAAGTCCTGATTCTGCTTTGTCTCCTCTTTCTTTCGGTGCCTCGCCT AAGATGGGGGTCTTTCTCAATGCGATGCGGAAGCTCCAGCCGAAACTGATGGTGATCACTGAGCAAGAATCGAATCTAAA TGGTTCCAATTTGATGGAGCGGATTGATAGATCATTGTATTTTTACAGTGCACTTTTTGACTGCTTGGATTCTACTGTGA TGAGAACTTCAGTGGAGAGGCAAAAACTTGAGAGCATGCTTCTGGGGGAGCAGATCAAGAACATCATTGCTTGTGAGGGA GTTGATAGAAAGGAGAGGCATGAAAAACTCGAGAAATGGATTCGGAGGCTCGAATTGGCGGGGTTTGTGAAGGTTCCTTT GAGCTACAATGGTAGGATTGAAGCTAAGAGTCTGTTGCAGAGATATGGTCATAAGTACAAGTTTAGAGAAGAGAATGATG GTTTGCTTATCTGCTGGAGTGATAGGCCACTGTTTTCTGTATCAGCATGGAGTTTCAGGAAATGAATGTTACTAACTTCA GATATATATGATGAAGGTCTGCTTGTGTATTTTCGTTAATAAGCAAAGGATTTCAAGAGAAATAAATGAATAATCAAGAG AAGGAGATAGATGGGTTTATACTTTCATAATTATTTTCTTTTCTAGCTTTAAATTGTTTATATGTATAGATTTTATGATT TTTTTTCTCTAGAGCTGCTGAAGGTTTTAAAGATGTCAAAACACATCCATCTTGTATATGTGAGTTAGTTAGACTTTCTA GAGTTAGTTATTCAGTTTCTGTAACTAACACTGAAGGAAGTAACTATATCTCAGCATGTATGGAGATTCTTGTACCATTC ATTGATCAATGATGAGAATGTTAATTATTCCTCATTATGTTTATCACTCTGATCATACTTGATACAAAATACACATGAAT CTATTTCACAACAAAAACCAGTATGTTTGAAGAGGTTTCCAAGGATTTACCATTAGGATATGGTATTAAGGGGGCGAATC TTGTATGTAAGCTTCAAAAATTCATTTATTGTCTTAGACAAGCCTCTAGACAGTGGTTCAAAAGTTTTCAGCTGCTTTGA CATCAATTGGCTTCACACAATCTAGGTGTGATTATCATTGGTTAAC
CDS sequence (LotjaGi3g1v0115800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGAGCTGAGATATGACTCCCAAGGATTAAAAAACCCAATAAGCCTTCTTATTGAGTGCGCTAAATGCGTCGCATC TGGAAGCATCAAGAATGCAGATATAGGACTTGAGCTCATTTCTCAGATTTCATCTCCTGATGGTGATGCAGTGCAAAGGA TGGTCACTTATTTCAGTGAAGCACTTGGTTACAGGATAGTCAAACATTTACCTGGTGTATACAAAGCTCTCAATTCCTCG AAAACATCATCGTCTTCAGAAGACTTCCTTGTTCAGAAATACTTCTATGAACTTTGCCCCTTCCTGAAGTTTTCATACCT GATCACAAACCAAGCAATTGTAGAAGCTATGGAAAGTGAAAACTGGGTTCACATCATTGATCTTCATTGTTCTGAACCAG CTCAGTGGGTGAATCTTCTACTAACATTAAAAAACCGCCATGGAGGCCCGCCCCATCTAAAAATCACAGGTATTCATGAA AAGAAAGAGGTATTAGACCAAATGAGTCTTCACTTGACAGCTGAAGCTGGGAATTTGGATTTCCCTTTACAGTTTAATCC AATTGTTAGCAAACTGGAAGATGTTGACTTTGAAAACTTGCCTGTGAAGACAGGTGAAGCTCTTGCAATCACTTCAGTTC TTCAGCTTCATTCTCTTCTTGCCACGGACGATGACATGAGTGGGAAGTTCTCGCCAGCCGGAGCGGCATCTATGAACCTG CAGAGAGCAGTGCACATGGGCCAGAGGACTTTTGCTGAGTGGCTTGAGAGAGACATGATCAATGCATATATTTTAAGTCC TGATTCTGCTTTGTCTCCTCTTTCTTTCGGTGCCTCGCCTAAGATGGGGGTCTTTCTCAATGCGATGCGGAAGCTCCAGC CGAAACTGATGGTGATCACTGAGCAAGAATCGAATCTAAATGGTTCCAATTTGATGGAGCGGATTGATAGATCATTGTAT TTTTACAGTGCACTTTTTGACTGCTTGGATTCTACTGTGATGAGAACTTCAGTGGAGAGGCAAAAACTTGAGAGCATGCT TCTGGGGGAGCAGATCAAGAACATCATTGCTTGTGAGGGAGTTGATAGAAAGGAGAGGCATGAAAAACTCGAGAAATGGA TTCGGAGGCTCGAATTGGCGGGGTTTGTGAAGGTTCCTTTGAGCTACAATGGTAGGATTGAAGCTAAGAGTCTGTTGCAG AGATATGGTCATAAGTACAAGTTTAGAGAAGAGAATGATGGTTTGCTTATCTGCTGGAGTGATAGGCCACTGTTTTCTGT ATCAGCATGGAGTTTCAGGAAATGA
Protein sequence (LotjaGi3g1v0115800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRELRYDSQGLKNPISLLIECAKCVASGSIKNADIGLELISQISSPDGDAVQRMVTYFSEALGYRIVKHLPGVYKALNSS KTSSSSEDFLVQKYFYELCPFLKFSYLITNQAIVEAMESENWVHIIDLHCSEPAQWVNLLLTLKNRHGGPPHLKITGIHE KKEVLDQMSLHLTAEAGNLDFPLQFNPIVSKLEDVDFENLPVKTGEALAITSVLQLHSLLATDDDMSGKFSPAGAASMNL QRAVHMGQRTFAEWLERDMINAYILSPDSALSPLSFGASPKMGVFLNAMRKLQPKLMVITEQESNLNGSNLMERIDRSLY FYSALFDCLDSTVMRTSVERQKLESMLLGEQIKNIIACEGVDRKERHEKLEKWIRRLELAGFVKVPLSYNGRIEAKSLLQ RYGHKYKFREENDGLLICWSDRPLFSVSAWSFRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 257 | 257 | 6.3E-178 | – | |
| PANTHER | 1 | 257 | 257 | 6.3E-178 | – | |
| ProSiteProfiles | 5 | 431 | 427 | 76.215 | ||
| Pfam | 15 | 430 | 416 | 4.7E-120 | ||
| PANTHER | 278 | 431 | 154 | 6.3E-178 | – | |
| PANTHER | 278 | 431 | 154 | 6.3E-178 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0115800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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