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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0117500 |
| Transcript ID | LotjaGi3g1v0117500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G51950.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53; TrEMBL-Plants: tr|A0A0R0H030|A0A0R0H030_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0117500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14411408..14416410) extracted from Lotus japonicus Gifu genome v1.2.
AACTAATTTTTTCCTTTTTATAATTCCAATAGACAGAGAAAGGGTTAGAAAGAGACGAGCTTTCAACTTCACTGCACACT CTCTTGCTCTGAACCCCATAAAACAACACCCACCACACCATAGCACTGAAACAAAGCTTCTTCTTCTTCTTCTTCTTCTG CTCCCTCTGCTCCTGCTACTACTTCCTTCACGGGTAAGCCTGTGAGTTTCTGCTCACAACTTGATTTCATCTCTCATTTG GAAAACTTCACAGTTTTTGTTTCTTTCTTTCTTTGTTTCTGCAACTTTTCATTCAACTGCCATTTTTTCTTTTTGTGTGT CTTTTCTGATACCCTTTTCTGCATTTTTTTCTTATCAAAATTAATTTTTCATACTCCTTTTAACACTTCACTTTTATGCT TTTTTTCCTCCTTTAACTTGCTTTTTGTTGGCTTTTTTCAGGAACATGATGAAGAAGTTTTCATCTCAGATTGCTAGGTA GTGTTTGTGTGTGATTCTTGTGAAAAGTAAGAAACTTTACTTGTAGTAGAGAGGAAAAACAATAGTAGAGAGAAATACAC ACTCAACTCATTAACAAGAGAACATAAGTTTTAATTTTTTTAGTTATTGGGTTGCTAGTTTTTTTTTCTGAGGAATTTAA TCAAACTTATTGACTGTGATGGATGGTTATGAAGCTACAAGGATTGTGTTTTCAAGGATCCAAAACTTGGACCCTGAAAA TGCCTCCAAAATCATGGGCTTGCTTCTGCTTCAAGACCATGGTGAGAAAGAAATGATTAGGCTAGCACTTGGTCCTGAAT CCCTTGTTCACTCAGTGATTCTCACAGCTAGAAAGGAGTTGGGTTTGGCCATGAACTCTCCTTCCACACTCTCTACACCT CCATCACCATCCCCTTTCCTTTCTAGGCAAAATTCCAACACTTCTAGGCTCATAAACAGTGGCATGAACCTTCCTCCTAG TCTTAGCATCCCAAATTCATCATCTTCTACTACTACTTGGGCCACTCTATCTGAACTTCAAAACCCTGAAGATTTGATGA GTCCTAATAATTTAGTTCTTGGGTCTTCTTCTGCTTCCATGAACTCTTCATCCTTCTCACCTTACTTTGGAAATGGAGGG TCTGATTCAGTAGATGAGTTCCAGCTTCAAGACCAGCTTGCTTTCCTCAATGATGGACCACCTTCCCTTGTGCAAAAGAA TTCAGATTTATTTTACCCTCAGTCAGAGTTGTCTTCTAGTCCTAATAATGGTAGTGACCCTTCTTCACTCTTTGCATCAT ATGGTGGTTGGGGAGGTTCTGTTCACCGCAGGAGTTGCTCTGTGAATGATGCATGTATGGGGTCTGTAGACACAAATTCT GGGTTTGGTTGGAAGCCTTGCCTTTACTTTGCAAGAGGGTACTGTAAAAATGGCACTAGTTGCAGGTTCCTTCATGGAGA TGCTGAGGGTGGTGCAATGGTTGGGTCTCCTAGTAAGATTGAGATGATGGACCAGTGCCATGAACTCCTCAGATCCAAAA CCATTCAGCCACCAAGATTGGCTGCAGCTTCTCAGCTCATGGGATCTTCTACTTTTCCATATTCCCACAAGTGCATGAGT CTCCTTATGCTGCAGCAGCAACAAAGTGATTCTCAAAGGTATGTAGTGATTTTTTCTTGTTAAATTAGTGGGTTCTAAAT TCCAATGCAGTTTGCTAAATGCTTATGATCATGAATGTTATTGCAGAGCCGCAGCTGCAGCTTTGATGATGAGTGAGGAC TTGCACAAATTTGGAAGATCCAGACTCGAAAGAAATGAGTTTTCTCTGAACAGTCCTGGAATGGTGAACCCAGCTTCTAG GCAGATATACTTGACTTTTCCAGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAACTACTTCAGGTTCTTCTTATCTA GCTTTTTATAAGGAATTGAAATCTGCATGGTTTGCTTATTAGAGTACTGAAAAAATGTTAACTTGTTTTGCATTATGTTG CTGCAGCATCTACGGGCCTGTTCAAGATGTTAGGATCCCATATCAGCAAAAACGGATGTTTGGATTTGTTACCTTTGCTT ATCCGGAGACAGTGAAGCTCATTTTATCAAAAGGAAACCCGCATTTTGTTTGTGATGCTCGAGTGCTTGTTAAGCCTTAC AAGGAGAAGGGAAAAGTCCCAGACAAGTACAGGCACCTCCTTTGCCTTTTCTTTAACTCTCTTTTCTTAGTGCATGTTTG GATACACAGATTGTTTTCACGTTGGAAAGAGAATTGATTCAGGGAGAAGTTACTCTCAGTAGTTTTGTGGTAGCAGAATT GATTCTGGAAGATCTGAACATGAATCCAAACATGCTTGTTACTTGTAAGTCATTGTTTGACATATACTTTGAACTTTGCT GATGTATCTTGACATTTGCAGAAAGCTGCAACAGCTGGATAGGGGGGATTTTTCTCCTTGTGGTACACCTACTGGACTGG ATGCTAGAGACCCATTTGATCTCCAAGTTGGTAAGTTAATGCTTTATTTAACCTCCCTTTATCTTTTTATTTGGGATTGT GTTGTTCTCAGCCTCTCTTCTTGAACATGTGTGTCGCCCTCTAATTTTTTTTTAGGAGGGAGAATGTGCTACAATACTCA AGACATGCTGTTGAGGAGGAAATTAGAGGAACAAGCTGATTTTCAACAAGCACTTGAGCTCCAAAGTAGGAGGTTGATGG GTCTGCAACTTCTTGACATCAAAAAGCAACAGCAGCGTGCATTTTCCATCGGAAGTCCAATTCCTTCCCCTAATCACTCA CCTAGTCTGTTCAATCAAAATCTTGTTCCTTCCCCATTTCACAACAGCTTTGAGAGCCAAGAGGGTAATTTTATATATCT CTACCATTTTAAGCGCAGTTTATCTTGAACTGTAAACTTAGTGCTTTCTCACACATGGAATGAACTGGTTTAGATTTATG CTTTTTGATTCCAGAGAATGGTTCAAGTTCTGTTCCTGCAAGCACTCCATCAATTCCTGTTGATCAGAAACTTATGCAAC AGGATGCCAAGATTTCTGTTGGCAAAGAAGTCACAATCAATGGAGATGATGGGAATAATGATACAAATAGCAAGAAGAGC TCCAGTCATGAAGATCTTGATTTACAAGAATGGTATAAAACTTTTTTTCTTGTTGATAATAGCCAAGGGATACTAGAATA GCAAGCACCTTTATTGCATCAAATTCCCCTTTTAGTCCATGCTAAAAGTCCTCTGCATTTATTCCTAATCTTCAATCCTA ACATTGAAATTCTGACATTGATTGTCTTTTAAAGGCTATGGCATCTTAATGAGTTAATGAATAAATGCAGCTTGGAGCAT ATTCTCCCTGATAGCCCCTTTGCTTCCCTCACAAAAGCTATTGGAGACTACATGACTGCATTCTCCAATGGACCTATTGA GGCCACTGATTCAGATGCCTCAGCTGCATCTGCTAACTCCAAATTTAGCAATAGCACATTGCTTCCAGAAGCATCTGCTC TAGACATGGGATCTTATAAATCCTATAACTGCCAAGTTCCCAGGTACCTTATATTGGCATCATATTTAACTTCCACTCCC CATGAATTTTAGTATCCATAAATTTCTTGACTTGTGATTATATGAATTTTATTTTAGGTTCTCTTCTGGCCATGGAACCA TTGGAATGCTTGCTGGCACCGGTGGACCAATTGGCATTTAGAATTTTAATTTCCTTAGGTTCAGGTAATTTATACTTCAT ATCTTTCAGATTATGAGACACTGCTGCTTGTGTTCAAACTTTCTTTGTAGTTGTTGAGATTTTCTTTGGTCTCATCACTT CTTTTTTTGTCTTTTGTTAAATATTTTTCAGGAAGTGAAGCATGATCAAATCTGTAGAGAATCAACAGCATTGAGACCAT CACCATCAATCAATACTATACTACTTACTACCATACAAAATGCATACTTAAAAGCTGTTTAGTAAAGGAAGTAGGACAGC CATTCCCTTTCTTATATTATCATTATTATTGCCCCATTTTCTCTTCTAATTTCTGTAGCAAGCTGGAGAACCACAGGTAT AAGCACAGAATCAGAGTCAATATGCAGTAGTAGTAACAAACACCTATCACTGTAATATCTGCTTCTCTTTCACTTCCCTT ACCCATGTTGGATGTGTAAGGCTGCTGATAGTAAGGTAACTACAAGACTCATACAAAGTGACTACTAAGCTTGAAGAGAC CATGAGTGAGGACTGAGGAGGAGTTATAATTACTAGTCTTAGCTGGTTTTTTAGTTGAAAAAAGGAGATTTCTAGCACTG GTTTGTAATCTTAGCTGGTTAATTTTAAAGTTGAAAAAAGGGAGATTTCTAGCACTGGTTTGTAATGTGTGCACTCCTTC CTACTTAGTTGTACACAATTATCAATCCCTGTAACAAGACAGTAAAGAGAGAAATTTAAAAAGAAAAAGCAGAAAGCAAA AGTGAGTTTAAGGCTAATTAATTGGTCTCTTGACCCTCATTCACACCCTTCTTCCAAAAAAATTTTTGAAGAGGAGAATT TGTCTTTATTCTTGCAATTATTTTTCACTTTCAATTTGGTGGTTGTGGACTTGTGGGGTCTGTTGGCATTGTTGAAGGGA GGGCCACAAGACACATACCATCACATGGGGTTGCTGACTCCTCAAGTGGGCCCTCACTCATTAACATAAAGCCAGGTTGT TTTTTAGGGGACCACCCACCAAAACTCACCCGTGTGATTGATGCCCACTTTCTTTCACTACTTTCTCTCATATCTAGCCT TTACTTTCTTTCACTGACAGGAAAGGACATGTAAAAATCTAATATATAAAAAGGCTAAATATGTTTTTCATCACTGAACT TTGACCTGAGTTTTGGTTTTCGTTCATCATCGGTTCATCGTCGGTGTAACTTTTGAATTAGGCCTCAAGGTTAAGGCTTT GTTTGGTTGGAGGGAAGGAAAAGGGGAAGGGAAGAAAACACGG
CDS sequence (LotjaGi3g1v0117500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGTTATGAAGCTACAAGGATTGTGTTTTCAAGGATCCAAAACTTGGACCCTGAAAATGCCTCCAAAATCATGGG CTTGCTTCTGCTTCAAGACCATGGTGAGAAAGAAATGATTAGGCTAGCACTTGGTCCTGAATCCCTTGTTCACTCAGTGA TTCTCACAGCTAGAAAGGAGTTGGGTTTGGCCATGAACTCTCCTTCCACACTCTCTACACCTCCATCACCATCCCCTTTC CTTTCTAGGCAAAATTCCAACACTTCTAGGCTCATAAACAGTGGCATGAACCTTCCTCCTAGTCTTAGCATCCCAAATTC ATCATCTTCTACTACTACTTGGGCCACTCTATCTGAACTTCAAAACCCTGAAGATTTGATGAGTCCTAATAATTTAGTTC TTGGGTCTTCTTCTGCTTCCATGAACTCTTCATCCTTCTCACCTTACTTTGGAAATGGAGGGTCTGATTCAGTAGATGAG TTCCAGCTTCAAGACCAGCTTGCTTTCCTCAATGATGGACCACCTTCCCTTGTGCAAAAGAATTCAGATTTATTTTACCC TCAGTCAGAGTTGTCTTCTAGTCCTAATAATGGTAGTGACCCTTCTTCACTCTTTGCATCATATGGTGGTTGGGGAGGTT CTGTTCACCGCAGGAGTTGCTCTGTGAATGATGCATGTATGGGGTCTGTAGACACAAATTCTGGGTTTGGTTGGAAGCCT TGCCTTTACTTTGCAAGAGGGTACTGTAAAAATGGCACTAGTTGCAGGTTCCTTCATGGAGATGCTGAGGGTGGTGCAAT GGTTGGGTCTCCTAGTAAGATTGAGATGATGGACCAGTGCCATGAACTCCTCAGATCCAAAACCATTCAGCCACCAAGAT TGGCTGCAGCTTCTCAGCTCATGGGATCTTCTACTTTTCCATATTCCCACAAGTGCATGAGTCTCCTTATGCTGCAGCAG CAACAAAGTGATTCTCAAAGAGCCGCAGCTGCAGCTTTGATGATGAGTGAGGACTTGCACAAATTTGGAAGATCCAGACT CGAAAGAAATGAGTTTTCTCTGAACAGTCCTGGAATGGTGAACCCAGCTTCTAGGCAGATATACTTGACTTTTCCAGCAG ATAGCACTTTCAGAGAGGAAGATGTTTCAAACTACTTCAGCATCTACGGGCCTGTTCAAGATGTTAGGATCCCATATCAG CAAAAACGGATGTTTGGATTTGTTACCTTTGCTTATCCGGAGACAGTGAAGCTCATTTTATCAAAAGGAAACCCGCATTT TGTTTGTGATGCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGAAAAGTCCCAGACAAAAAGCTGCAACAGCTGGATA GGGGGGATTTTTCTCCTTGTGGTACACCTACTGGACTGGATGCTAGAGACCCATTTGATCTCCAAGTTGGAGGGAGAATG TGCTACAATACTCAAGACATGCTGTTGAGGAGGAAATTAGAGGAACAAGCTGATTTTCAACAAGCACTTGAGCTCCAAAG TAGGAGGTTGATGGGTCTGCAACTTCTTGACATCAAAAAGCAACAGCAGCGTGCATTTTCCATCGGAAGTCCAATTCCTT CCCCTAATCACTCACCTAGTCTGTTCAATCAAAATCTTGTTCCTTCCCCATTTCACAACAGCTTTGAGAGCCAAGAGGAG AATGGTTCAAGTTCTGTTCCTGCAAGCACTCCATCAATTCCTGTTGATCAGAAACTTATGCAACAGGATGCCAAGATTTC TGTTGGCAAAGAAGTCACAATCAATGGAGATGATGGGAATAATGATACAAATAGCAAGAAGAGCTCCAGTCATGAAGATC TTGATTTACAAGAATGCTTGGAGCATATTCTCCCTGATAGCCCCTTTGCTTCCCTCACAAAAGCTATTGGAGACTACATG ACTGCATTCTCCAATGGACCTATTGAGGCCACTGATTCAGATGCCTCAGCTGCATCTGCTAACTCCAAATTTAGCAATAG CACATTGCTTCCAGAAGCATCTGCTCTAGACATGGGATCTTATAAATCCTATAACTGCCAAGTTCCCAGGTTCTCTTCTG GCCATGGAACCATTGGAATGCTTGCTGGCACCGGTGGACCAATTGGCATTTAG
Protein sequence (LotjaGi3g1v0117500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGYEATRIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLALGPESLVHSVILTARKELGLAMNSPSTLSTPPSPSPF LSRQNSNTSRLINSGMNLPPSLSIPNSSSSTTTWATLSELQNPEDLMSPNNLVLGSSSASMNSSSFSPYFGNGGSDSVDE FQLQDQLAFLNDGPPSLVQKNSDLFYPQSELSSSPNNGSDPSSLFASYGGWGGSVHRRSCSVNDACMGSVDTNSGFGWKP CLYFARGYCKNGTSCRFLHGDAEGGAMVGSPSKIEMMDQCHELLRSKTIQPPRLAAASQLMGSSTFPYSHKCMSLLMLQQ QQSDSQRAAAAALMMSEDLHKFGRSRLERNEFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ QKRMFGFVTFAYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKLQQLDRGDFSPCGTPTGLDARDPFDLQVGGRM CYNTQDMLLRRKLEEQADFQQALELQSRRLMGLQLLDIKKQQQRAFSIGSPIPSPNHSPSLFNQNLVPSPFHNSFESQEE NGSSSVPASTPSIPVDQKLMQQDAKISVGKEVTINGDDGNNDTNSKKSSSHEDLDLQECLEHILPDSPFASLTKAIGDYM TAFSNGPIEATDSDASAASANSKFSNSTLLPEASALDMGSYKSYNCQVPRFSSGHGTIGMLAGTGGPIGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 700 | 700 | 9.2E-285 | – | |
| PANTHER | 1 | 700 | 700 | 9.2E-285 | – | |
| MobiDBLite | 66 | 110 | 45 | - | – | |
| Gene3D | 231 | 312 | 82 | 3.5E-6 | – | |
| ProSiteProfiles | 235 | 262 | 28 | 14.38 | ||
| SMART | 237 | 261 | 25 | 1.4E-4 | ||
| SUPERFAMILY | 237 | 263 | 27 | 3.79E-5 | ||
| Pfam | 240 | 260 | 21 | 1.3E-5 | ||
| Gene3D | 316 | 453 | 138 | 4.1E-10 | ||
| ProSiteProfiles | 365 | 441 | 77 | 9.763 | ||
| SMART | 366 | 436 | 71 | 2.6E-8 | ||
| CDD | 367 | 436 | 70 | 1.19204E-39 | ||
| Pfam | 377 | 421 | 45 | 6.9E-6 | ||
| SUPERFAMILY | 377 | 450 | 74 | 5.97E-12 | ||
| MobiDBLite | 527 | 573 | 47 | - | – | |
| MobiDBLite | 590 | 613 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi3g1v0117500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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