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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0122200 |
| Transcript ID | LotjaGi3g1v0122200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein, putative; TAIR: AT3G07970.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2; TrEMBL-Plants: tr|K7ME92|K7ME92_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0122200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14940891..14945604) extracted from Lotus japonicus Gifu genome v1.2.
CACAAACCTCTCTTTAACATCATTAATTACAAGTACTCTTTTTAATTTCCCTTCATTCAGTTTCTCTTTTCCCATAAGGT GAAACATCAAAATGTCTCCACAAAGTTTAGTACTTTCACATTCACTTTTCATCATGATCCTCTCATTTGGCTTGTGTCTT GGCTCTTACATTGATGACACACATCATAAAACAAATTATGATCAACCTGATGAGCATTTTGGTGTCAAGAAACTGGCTCC TCAACCTTCCCCATTTTCATGGCCTCAAAGAACGTTTGATGTTGATGACTATGGACCCAGAGATAACGATGAAAGTGGTG ATAATGAGGTAACGTAACAACAACATGAGGTAGGTGAAATTTAAGTATATTTCAGTTCTCAATCTCTCACTCTTTTTTTT TTGTTTTTGTTTTATTGCACTATAGGCATTTGAGATGGCATGGGATCAGGCATGTTCCGAAGGGGGTGCTCTTGTGGTAC CTGAAAACAGGGTCTATCATCTAAAGCCAATAAAATTTTCAGGCCCTTGTCATCCCAATACTTCCTTCAAGGTGAGATAC TGTGATCAAAGATCGGCGATTCTCAAATGATGTCTTATTTCATGTCTCACTAATGAAATTGTGTCATGTTAATTAGAAAC CACTCAGATAAGGTTATAAATGTCAGAACCATGTATTTTTTAATTAACATGATATAATTTTACTGGTTGGAATATAAAAT CAAACACCATTTGGGACAAAATTCTTGACCAGAGATGCTACATTCACTAGTAACACTTGTTTTCTTCTTGTAACCAAAAA AAAATTTCACTAGTAACGCCTCGTGAGAAATTGAGTTGTTTTTCACCTTCAATGTGCACTAGTAACTCATGTAATTGTTA TGTGTTTGTTTCATGTTAGATTCATGGAACAATCAAAGCTTGGCCTAAATTTTCAGCATATGAAAAAGATAGACGACTCT GGATTATGTTTAACAATGTCACGAATCTCAGAGTTGATGGTGGCGGAACCATCAATGGCAATGGGAGAAAATGGTGGCAG AACTCTTGTAAAATCAACGAAAGCCTTGTACGTTATTGGATTTCACTCTATAAACTCAACCTCCTATTGCATTCACTCCA AAATGAAAGTTTTTTTTTGTTACAACTCCAAAACGAAAGTTGTTTCTATTCATTTGTTTTCTTGGTCACTATATAAAAAA AAATTGCATAAAAAAATTATGTAGCTTCTTCTTTTAAAAGATTTTTTTTATGCAATCTAAAATTGTGAGTTTTGTGACTA AACTTATTGTTGCAGGTGTTCACACTAAACGGTAAATAACTGACCATGAAATGTGCTTCATTTCTATGCGCGAGAATCGA GCTCCCAACCTCTTAGCTAAGGGTAGAGGTGAGCAAAAGTCCATGCCACACCACACCTAGTGGTTGCTAACCTTGTCCTT TAACCATCAAGTTAAGGGCTCATCCTTGCTGATAGAAATGAAGCACATTTAGTGGCCAACTATGGGAGCACAAGTGCAGA AATAATCAAAATAATTATTTTTATTTTTATCACTATAAGGTTTCACCCAAAAAATCACAAACATTTTAAGAAATAAAATA AAGTAAAAACATGTATTTTTATGATTAAAATAAAAGCAAAATAAATACAGAATAATTTATCAAATCAAATCAAAATAACA TTAATTATGATTTCAATCAATGGTACTTTTTGGATGAACCAATATTTAGTCATAAAAAATCTAAAATTTGCTCCTCCTTA ATTTATTTCAATTTTTATTCTTGAGGTTTTCAATACTGACCATGATTTCCTTTACCCTCTTTTGTTTCACAGCCATGTAG GGATGCGCCAACTGTAAGTTAATCTTCTTTATAATATTGAATCTTTTGACTTCTGTTTCCAACTTCCATACTAATTTTTT TTTGTGGAAAATTTGTTGCACAGGCTGTGACTTTCAATGAGTGCACCAATTTGAGAGTGGCAAACCTGAGGTTCAAGAAT GCACAGCAAATGCACATTAGATTTCAGAGATGCTACAACGTTAGAGCTTTGAATTTGATCATCAGAGCACCAGGGAACAG CCCCAACACTGATGGAATTCATGTCACTGGGACACAAAACATTATCATAAGCAACAGTGTTATTAGGACAGGTAAAAAAA CCAACATCAATGCACAAAATGAAAAATAAATAAAAAAATTCACTGGAATTTTCAAATTCCTAAAGTTTAATTTTCCCACT GTTTTATTGAAGGTGACGATTGTATTTCCATCGTAAGTGGGTCGAAAAATGTTCGAGCCTCTGATATCATTTGCGGTCCA GGACATGGAATCAGGTTTGTGATTATTATAACCACAAATAATAACTCTAAGTTGCAGCCATGATTTGATTTTATATAAAT GTTTTGTCAATCGAGATCATGAAAAATATGATTCACAAGTGAAAAAGAGTTTCTTTGCAAATTAATTTCATAAGAAGGTC AATCTATGTGATTTTAAATAAAGATTTACGCAATTGCAATTTTAGAGGTCTCTGTCATGATTTTCCTGATAGCTGACTGT AATTTAAAAACCTCAAGTAAAATTTTGTTTAGTCAATTTACCTTAATTGATGTTGTATTGTTTTGCAGTATTGGGAGCTT AGGAGAAGGTAACTCGGAAGCTCAGGTATCCAATGTGGTAGTGAACAGAGCCATCTTAACAGAAACTACTAATGGAGTGA GAATAAAGACTTGGCAAGTAAGTATTGGACTTTGCTGTTACTTACATTATTACAAGTAATTGAACTGCAGAAAGGGGATT GGTTTTTACACACAAGAAAATTTGTTTGAACTTTATAATTAATTGAAAGATAAAAATGATAAGTTGCCAAATTTAGGTTT AAGTTATATACATTGGGAAGTTGACCAATGATTCAGGGACTGGTATATGGGGCAATAGTGCACCAAAAGTTCCAATTTTT TTTGTTGGCTCTTCACTACCTTTCAGCTTTATCTGGTTGGTTATTATCACTTCTAAGTTCTAACTGACCCAAAGTTGACC TGGAATATTTCAACTAACCACGTTTGTTGGCAAGTTTACACAATCCACTAGTTCCTAACCTTCTTCAAACAAGTCAACAA CATTTTATTTAAAACAATGTGCAGTTCAACTTTCTTCTGGATTTTCCTTCTTAACTAATTAGAACCACTAACCAGCAACT CATTTCTTTTTCATGGAATGACACGACAATTACCTGGAAAATTATCCCAAATGAAGAACTTTCTACTACAATTTAAAAAA ATATAGAGCCTTCAAATTTGCTCATATAATTAATCAGCCCTTAGGTAACTTTTTTTGGGTAAAGTATAGGCTTATATTAA ACTTATTTAGACCAATCATAAGTTCTTCCAAGTTCAGTGGTATATCATAAATAAGTTATTAGATCACCTAGTGTTACGCA TATAAATTTCAACATATCTCAATTACAAGGCCAATCCCTATTTATATGCGTAACACCAAGGTTCATCCACGATGTCTCAA ACATGTAATGGTGTGTGTTTTAACGTTACTATATTCACTCGAGATATGACTAAAATAATTCATAAGAGAATACTCAATCT AATTTAACGGAGAGAAAATTTTCAAAGAATACAACTTGTTCATAAGAAGAGTACTTTTAAAAGATGAGAGATGTTTTAAT TAGGAAAAACTTAAATACAGTACTTTAGTTACCGTTCATACTATTGCGCAATGAAAAACTAAACCACCCACTTTCTTAAT TTATTAGTATGGTGTTTTATTTATTTATTAACTCATGTGTTATATTGTGATTGAACAACAATAAAAAGGAACTCTAAGTT TTGTCTTTTTAATTATGATAATTAACATATTTTCATTGTATCTCAACACAGGGAGGTTCAGGCTTTGCAAGAAACATCAA GTTTCAGAACATAGCAATGAGAAATGTGTCTAATCCCATAATCATAGATCAAAACTACTGTGACCAGGACAAGCCATGCC ATGAACAGGTAATATCGAAATCTCTGAAATTAACTACAAAAGGAGCAAATGCTTCTATTCTATCAAATAGCTTTGCATGA AATTTATCATAATCACAACCATGTCTGTCTGAAATTGCAGCACTCAGCAGTGCAATTGAGCAACGTGGTGTACAAAAACA TAAGTGGAACAAGTGCCTCAGAATTGGCAATCAAATTTAATTGCAGCAAAACTGTTCCTTGCAAGGGAATCTTCGTGCAA GAGGTGATTTTAAAACCAGAACAAGGCCATGGAAGGACCACTGCTTCGTGTGAGAATGTTGGATATGTAGGAAAGTTTTT TCCTCAATGCTCTTATTGAAGAATGACGTTAATTACTCGGATTTGTAAATACCAATTCAGTTATATTTAGGCACAGAGAG GCATATAAATGTTACACAACTTACTAGTCCAAAAAACTTTGAAGCAGATCGATTCAATAAATTTACCATAAGGTAGGTTT TAAAATAGTCAAACCACCTTAATTTTTACTAGTGTTTTTCTTCGTCTTATTGCGTCCTTTTACAAGACCATTAATTCATG AGCAAATGGAAGTCCTTTATATCTATATTTTGCACACTGACGATTTTCCTGCATATTTACAAATAGTTATCACCAAATAA CTTCGCACGGGTATTTGTAGCACTCCGATGACTGCGAATTTGGCCGCTGAAGCGGCTGCAACCGTAAAATGTTC
CDS sequence (LotjaGi3g1v0122200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCACAAAGTTTAGTACTTTCACATTCACTTTTCATCATGATCCTCTCATTTGGCTTGTGTCTTGGCTCTTACAT TGATGACACACATCATAAAACAAATTATGATCAACCTGATGAGCATTTTGGTGTCAAGAAACTGGCTCCTCAACCTTCCC CATTTTCATGGCCTCAAAGAACGTTTGATGTTGATGACTATGGACCCAGAGATAACGATGAAAGTGGTGATAATGAGGCA TTTGAGATGGCATGGGATCAGGCATGTTCCGAAGGGGGTGCTCTTGTGGTACCTGAAAACAGGGTCTATCATCTAAAGCC AATAAAATTTTCAGGCCCTTGTCATCCCAATACTTCCTTCAAGATTCATGGAACAATCAAAGCTTGGCCTAAATTTTCAG CATATGAAAAAGATAGACGACTCTGGATTATGTTTAACAATGTCACGAATCTCAGAGTTGATGGTGGCGGAACCATCAAT GGCAATGGGAGAAAATGGTGGCAGAACTCTTGTAAAATCAACGAAAGCCTTCCATGTAGGGATGCGCCAACTGCTGTGAC TTTCAATGAGTGCACCAATTTGAGAGTGGCAAACCTGAGGTTCAAGAATGCACAGCAAATGCACATTAGATTTCAGAGAT GCTACAACGTTAGAGCTTTGAATTTGATCATCAGAGCACCAGGGAACAGCCCCAACACTGATGGAATTCATGTCACTGGG ACACAAAACATTATCATAAGCAACAGTGTTATTAGGACAGGTGACGATTGTATTTCCATCGTAAGTGGGTCGAAAAATGT TCGAGCCTCTGATATCATTTGCGGTCCAGGACATGGAATCAGTATTGGGAGCTTAGGAGAAGGTAACTCGGAAGCTCAGG TATCCAATGTGGTAGTGAACAGAGCCATCTTAACAGAAACTACTAATGGAGTGAGAATAAAGACTTGGCAAGGAGGTTCA GGCTTTGCAAGAAACATCAAGTTTCAGAACATAGCAATGAGAAATGTGTCTAATCCCATAATCATAGATCAAAACTACTG TGACCAGGACAAGCCATGCCATGAACAGCACTCAGCAGTGCAATTGAGCAACGTGGTGTACAAAAACATAAGTGGAACAA GTGCCTCAGAATTGGCAATCAAATTTAATTGCAGCAAAACTGTTCCTTGCAAGGGAATCTTCGTGCAAGAGGTGATTTTA AAACCAGAACAAGGCCATGGAAGGACCACTGCTTCGTGTGAGAATGTTGGATATGTAGGAAAGTTTTTTCCTCAATGCTC TTATTGA
Protein sequence (LotjaGi3g1v0122200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPQSLVLSHSLFIMILSFGLCLGSYIDDTHHKTNYDQPDEHFGVKKLAPQPSPFSWPQRTFDVDDYGPRDNDESGDNEA FEMAWDQACSEGGALVVPENRVYHLKPIKFSGPCHPNTSFKIHGTIKAWPKFSAYEKDRRLWIMFNNVTNLRVDGGGTIN GNGRKWWQNSCKINESLPCRDAPTAVTFNECTNLRVANLRFKNAQQMHIRFQRCYNVRALNLIIRAPGNSPNTDGIHVTG TQNIIISNSVIRTGDDCISIVSGSKNVRASDIICGPGHGISIGSLGEGNSEAQVSNVVVNRAILTETTNGVRIKTWQGGS GFARNIKFQNIAMRNVSNPIIIDQNYCDQDKPCHEQHSAVQLSNVVYKNISGTSASELAIKFNCSKTVPCKGIFVQEVIL KPEQGHGRTTASCENVGYVGKFFPQCSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 13 | 427 | 415 | 6.7E-190 | – | |
| PANTHER | 13 | 427 | 415 | 6.7E-190 | – | |
| Phobius | 18 | 24 | 7 | - | – | |
| Phobius | 25 | 428 | 404 | - | – | |
| Gene3D | 53 | 425 | 373 | 3.6E-117 | ||
| SUPERFAMILY | 54 | 420 | 367 | 1.3E-119 | ||
| Pfam | 95 | 416 | 322 | 1.1E-102 | ||
| SMART | 214 | 240 | 27 | 590.0 | ||
| SMART | 241 | 262 | 22 | 87.0 | ||
| SMART | 264 | 284 | 21 | 4800.0 | ||
| ProSitePatterns | 271 | 284 | 14 | - | ||
| SMART | 294 | 315 | 22 | 1700.0 | ||
| SMART | 323 | 344 | 22 | 4200.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0122200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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