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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0122300 |
| Transcript ID | LotjaGi3g1v0122300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT2G17030.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q3EBZ2|SKI23_ARATH F-box protein SKIP23; TrEMBL-Plants: tr|G7IWN5|G7IWN5_MEDTR F-box SKIP23-like protein; Found in the gene: LotjaGi3g1v0122300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14951107..14956780) extracted from Lotus japonicus Gifu genome v1.2.
AGCTTCTACAAGAGGATTACACAATCTCACTCTGTCTCCCCAAGCTCTCTGGCTATCTACTCTCTCTTTTCCTTATATAA GAACCAAACCAACCAACTACTTCAAGTCCCTTAAGAAAGCTACTTAGTTTAGTTAATTGCATTTTTTTATACAAAAGCAA AGAAAGAAAAAAAAATTGAAAATCAGGTTAGACCCTCATGAACAAAGTGCCTATGAGGTCGGCTCTCAACAAATCAGTCA CGCCATCCACAAGAGCAAGCAAACAGAAGTAGTCGACGCTCCCAGCTTGGCTAAGAAATCCGCCACCACAGCACATCTCA AATACAATCGAATTTTTTACATATTCATAATCAGACTTTCAATTGCGAAAAAAATTAGACTATATTCATAATCAGACTTT CAATTATGAAAAAATAAATCAGTGGCGTGAATGGAGTATGTTGTACATTTTCAGTCATTCTTCGTCTCCTTCCTTGCTCT CCTTCTTCCGGCTTTATTCTTCTCCTTCAAAAGAAAAAACCACCACCACCACACAACCAATCCATCCATGGCGGCGCCAC CAGACTGGTCTCAACTCCCGGCGGAGCTCCTCCATCTAATCTCACAACGCCTCAACAGCCCACTCTACCTCCTCCGCTTT CGATCCGTCTGCTCCACCTGGCGCCACTCTTCCGCATCCTCCTTCATCCCCATCCACCATTTCCCCTTCAATTTCCCACC CCTCTCCGATCACGATCACCACGACGCTTCCTCCTTCTCCCTCACCAAACGCACCGTCGTCCTCATCACCCCACCACCAC CACCGCACCACCAAACCCAAACCCCATGGTTGGTCAAAATCGGCGAAGACCTATGTGACGGTGACCGAACCCGAACCCGA CTCTGGCACCCTCTCTTTCGTGGTCCACACTTCCCCATCTACGCCATGCGCGTGCTCGATTTCTACAACCTCTCCGTCTT ACACATCGGGAACGAGTTCAACCTTCACCACTCTCCTCCTTCTCCCTCCGGCCACGACTCTCTCTACATGGAGAAGGTAG TTGCGGCTACCACCTATCAGGGTAAGCAAGAGGTTTTCGTCTTGCTCACGATTCACATCTCCGGCAAGCTCGCCTTATTC CGCAGCGGCGACGAGAGCTGGAGGATCATCCCTGACATGCCCACGCCGTATGATGATGTCTGCGTCTTCAACGGCCGGCA CTTCGCGGTGGATGGCACCGGGCGAACCGTTGTGGTTGGATTGGATTCGGCTCTGGATCTGGTTGTTGTCGCCGAGCCGG TGTTCGGCGGGGATAAGAAATTCTTGGTGGAGAGCGAGGGAGAGTTGTTGCTGGTGGATAAACACATGTCCTCTAATTGG TTTTGTGGTGGTGGAGAGGCTGCTGATGATGAGGAGAACGATGGCGACGACGACAATGGTGAAGGGGTTTACAGGGTTGG GTGGGAGAGAGCTGTGAGTTTTGATGTTTATAGGCTTGACCAGAAGGAGAAGAGGTGGGTGGAGGTGACGAGTTTAGGGG ACCGGGTTTTGTTCTTGGGGGGTGAATGTGCATTCTCTGCTTCAGCTTCGGATTTACGCGTTTGCAAGGGGAACTGTGTG GTCTTTAAAGATCTTGCTCTGGAATGTGCAATAGGTGTTTTTCCTTTGGATGTTGGTCGGATTTCGCCGCTGTCTAATCA TCCCGATTATTCGAGGTTGTTCTGGCCATGCCCGGACTGGATATGGTCGCATTGCCATTGACAGACAGGATACTATGTAT GTTACATTGAAACTTTCTTATGTGATTTGTTATGCAAATATCTCCATTTACTGCTTAGCACTGTTTTAGTTCAACATAAT GGTTGATGTTACTTCATTGTTGATTTGTACATTTGCTTAGTTTCATACTATCAATCACTTTGGATCATAAGAAGTATTTA TAGGGAAAAGTGGAAATAGTCTTACTGTCACTGTGAGTCCTTTAGGTAATAACAACTCTGTCTAACCTCTCTGATAGGGT TGTCCAAATTGCATCTATGATGAGTGATGACTACTTATAAGCATTAGATTTACTGCGTTGATAGACTACTGGTCTTGGGC TTGTTTCATTGATTAAAACACTGTGCAATCAGATTCACATTGCTTTCTTTCCAAGTGCAATGTGGTTGATTTATCTTGAA TAAGAACAAGCTATGTACTTAAATTTGATTTTGGCCTAAACCTTAAGATGGAAATAATAGTACTTCCTGCCATCAAGGCT GTTGGTTGTTGAATTTGTATCCCCTTAGAAGTTTCTGGTGTAGCTTCAGGAGAAATAGATCATAAAAAGATTTGCATGGA TTATTGATAGAAAATGGAAGCAAAGATTCTTCCTCCACAAACTGTTAACTTCTTCTTTGCTGTCAGTTTTCTAATTGTAT TTGGCTACCCTTTGTAGTGATCTTAGCGATACTGGAAATAATTTGACATTTCTATATGCTATAATGTACATTTTCTGTAC TAATTGTATTTGGCTACCCTTTGTAGTGATCTTAGTGATACTGGAAATAATTTGACATTTCTATATGCTATAATGTACAT TTTCTGCATTTTGCTGGTGTTCTAAATAGAATTTTCATACTCATAGAATAATGTGTTTTCTGGATGCTGGGTATGTTATG CCCTCTTGGAACTTGCTGCTGTTTTTTACCATTTGTTCATTAGTGTCTGGTCATATGGGTCAACTGCAAGTACAGGGCTT TGCTGTTTTTTCGTTTTCTCCATATTGCCCCAAGTGAAAGATTGTAGACCAAAATGTGCTGTTTAGGGACTTGTTGGGAT GTTGCAATGACACTATACTGGCCTGACTTCCCCCACCTACATTTTCTTTCTTACTTTCATTTTTTTTTCCAAATTAACGG AGAGAAACTGCCAGGAGTTGGGAACTTGGGGTGACTTCTCTAAGTTGCTGTCTTATGTCTCCAGGATAATCTAGCATTAG AGTACAACGCTATTTCTATAATGGCTTATGCATCTAATGCTGGATCAGATAGAAGCACCAACCTTGATGAATAATATGGC CTCAGTAACCTAAAACCAATAAAAGCAACATGCATGAGTGCTTTGTGTGATATCAATAAAAGCTAAGATCCTTCATGAGT GCATAGGTGCTTTAGTGTAAAATCAATAAAAGCAACATGCATGAGTGCTTAGTGTGATATCAATAAAAGCTAAGATCCTT CACAATCACACTGAAAATAAAAGCTAAGATCCTTGGTAGTGGTTTAAAGACCAATTTGCCTCACTTGCTTAGCTACTGCC TACTGCACATTTTATGAAGATAGATCAGACTGCTGCTTCATTTTGATTGCTGAGCTCAGAATTCAGATTCTGATGTACAA TCAAGGTTCATCAGCCTGAACTTTTAGCAAGATATCTTACTCAACTCTCGATCTATGTAAGTCATTTTCTTGAGATATTG AGATTTGTATGCTGAATTGGCTTAATTTTCATATCTAGAATCGTAGATTGCTCTGAGTTTATAAGTTAACTTTCATGTTT GAGTTAACCGCAATCCACATATCAGTAACCACCCTCCTTGTTTCTTCTCTCACTGCCAACTCAATATTCTTCCCGGTTCT GCCTCTATTTTTCCTAATGTAGATTTTTCTGAACTTGGGCTCATGTGACTATAGCATTGGATTTAAGAAAATAGCATTAA GATATTCTTGATCTATACCTCTAAGGTGATCCACGTACATATAGCTTGAATCCGCTGAATTCCTCCACTGTCACTGTTTG CTTCAACCTAAGGTTTATCACAGTTCTGAAATCTGAATCCCTTCCAAATATTGGTTTGCTGTGCTGGGTTCCCACCATTA AAACTAGCTCAAACATTTCCCTCCATCCCCATTATGGCCTACTTTATCCTTCCATCCTCCAATACCCCTTTATCTTATAA GTATCCCCCAAAACAGATGGATTTCTAATCTTCTTCATTGAGGTTTATGAATTATTTTTTCCCATAGAACTTTTGAGGAT TTTTTTCGAACTTAAATTTCTGTGAGAAATCTGTGAGGATTAGCAAAGCTTTTTCATTGTTTAGGGCTCCGATCATATTA TATTATATATTTAAATTTAATTAGAATGTACTACGGGATATAAAATATATAAAATCAAACAAGATATCAATCATCTATAC TAAATATTATGATTTTTTATAATTGATTCCAGTAGTGCTTTGATTTAAACCAAATAATTATATCTTTCATTGTTTTTTTG ACTGTCAAAATTGCACTAAAATTTGAGATTATAATGATTGTAAAATAATGCATTAAAAATTTATCTAATCTAAATATCTA TATATTATTTCCCCTAATTTTAAAATATTGGTATTGAAATTATCAAAAAAATATTGGTATTGTTTTATTCAATATTCTGC CTGTAAATAAAGCTACTGTCTGTAAGCCTATAAATAAATAGAGTTTTGTGATGTTGATAACAAATCAAACAATAAAAATT TCCAGTTCCTCTTTGATCGCAGCCACTTGACTATGGCTCTCAGCATAAAAAAAATGGCCGAGATTGTTTATATTCTTAGT GCATTGTCTTTCATATTCGGACTTGTAGCTCTTTACACGATGGTAAACAATCAACCCCATAAATTGATATAACTCCTCAA ATTCTTAATGTATTGTACTTAATTTTTTTAACAATTTACAGGACTCTAAAACGGTATATGATTCAACATCAGCTACACTG ATATATCTTTGTGTAGCTTTTCTTCTTGCTTCAAGTGTGGTTGGATTTCTTTCTTGGTTTTACCCTTACAATGGAATGTC AGTTCCGCTAAAGGTTTTGCTTTTTGACACAATGGGATTGGGCGTGGTTTTCTCTACCGTGTAAGTATTAATATCTTATT TTTTTTATGATTATATAATTTTCCAAGTATCTATCTATATCTAGGCTTCCCTTTCGGAAGCCTTGGCACAATACACCAAA TTAATACTTCTTATTGAAATATCTATAAAATTAAAGTTTGATTTGTCCTGCTGGTATTTCCAATTAAATGATTAATACTT TATTTTTTATTTTTTATGTTAGGTTATCAACTTTGTTGTCTGCATGGATATTGTTGTTGTTTCCAACAATTGATTCGGGC CTATTAGGTGGTGTTGTGTTATCCTTTCATTCGGGCCTCCTTTGGTTGGCTACCCTCTCGTTTGTTCACATGGTGAGGGA GGAATATTTTCGTAGAAACAACAACAACAATCGCATTAATGGTGCTGAGATAGCCATATAGCTATAGCTAGGAATTAATA TTGAATTTCATTAATTTTTCCTCTTCTTCATGTAGTATTCAAACTGCTGCCTAGGTTTGGAGTACTAATAGACACATTAT TATGTTGTTTCTGATTTAATTTGCTGTCATGGATTGGTCGTCAATCTTTGTTTTTATTTTCTTTTGGATTATTAGTAAGC AATGCTCTTTATTTTAATTTCTTGCTTGTCTAAGTTAATTAAATTTCATTCATCTATAAAAATATATTTCGTAAATAAAA AGTCACTTTAATTTAAAATTAAATAAATAATTCTCATAATAAATAAAAAAATGGTGATGAGAGTCTAAGTCTGTGGCGGA GGCAGACTTTCTAGTTGAGGGTGGCCACAATAAAAAATAAAAGCGTTTAATTTTTTTAGCTAAATACTTTTTAT
CDS sequence (LotjaGi3g1v0122300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTATGTTGTACATTTTCAGTCATTCTTCGTCTCCTTCCTTGCTCTCCTTCTTCCGGCTTTATTCTTCTCCTTCAA AAGAAAAAACCACCACCACCACACAACCAATCCATCCATGGCGGCGCCACCAGACTGGTCTCAACTCCCGGCGGAGCTCC TCCATCTAATCTCACAACGCCTCAACAGCCCACTCTACCTCCTCCGCTTTCGATCCGTCTGCTCCACCTGGCGCCACTCT TCCGCATCCTCCTTCATCCCCATCCACCATTTCCCCTTCAATTTCCCACCCCTCTCCGATCACGATCACCACGACGCTTC CTCCTTCTCCCTCACCAAACGCACCGTCGTCCTCATCACCCCACCACCACCACCGCACCACCAAACCCAAACCCCATGGT TGGTCAAAATCGGCGAAGACCTATGTGACGGTGACCGAACCCGAACCCGACTCTGGCACCCTCTCTTTCGTGGTCCACAC TTCCCCATCTACGCCATGCGCGTGCTCGATTTCTACAACCTCTCCGTCTTACACATCGGGAACGAGTTCAACCTTCACCA CTCTCCTCCTTCTCCCTCCGGCCACGACTCTCTCTACATGGAGAAGGTAGTTGCGGCTACCACCTATCAGGGTAAGCAAG AGGTTTTCGTCTTGCTCACGATTCACATCTCCGGCAAGCTCGCCTTATTCCGCAGCGGCGACGAGAGCTGGAGGATCATC CCTGACATGCCCACGCCGTATGATGATGTCTGCGTCTTCAACGGCCGGCACTTCGCGGTGGATGGCACCGGGCGAACCGT TGTGGTTGGATTGGATTCGGCTCTGGATCTGGTTGTTGTCGCCGAGCCGGTGTTCGGCGGGGATAAGAAATTCTTGGTGG AGAGCGAGGGAGAGTTGTTGCTGGTGGATAAACACATGTCCTCTAATTGGTTTTGTGGTGGTGGAGAGGCTGCTGATGAT GAGGAGAACGATGGCGACGACGACAATGGTGAAGGGGTTTACAGGGTTGGGTGGGAGAGAGCTGTGAGTTTTGATGTTTA TAGGCTTGACCAGAAGGAGAAGAGGTGGGTGGAGGTGACGAGTTTAGGGGACCGGGTTTTGTTCTTGGGGGGTGAATGTG CATTCTCTGCTTCAGCTTCGGATTTACGCGTTTGCAAGGGGAACTGTGTGGTCTTTAAAGATCTTGCTCTGGAATGTGCA ATAGGTGTTTTTCCTTTGGATGTTGGTCGGATTTCGCCGCTGTCTAATCATCCCGATTATTCGAGGTTGTTCTGGCCATG CCCGGACTGGATATGGTCGCATTGCCATTGA
Protein sequence (LotjaGi3g1v0122300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEYVVHFQSFFVSFLALLLPALFFSFKRKNHHHHTTNPSMAAPPDWSQLPAELLHLISQRLNSPLYLLRFRSVCSTWRHS SASSFIPIHHFPFNFPPLSDHDHHDASSFSLTKRTVVLITPPPPPHHQTQTPWLVKIGEDLCDGDRTRTRLWHPLFRGPH FPIYAMRVLDFYNLSVLHIGNEFNLHHSPPSPSGHDSLYMEKVVAATTYQGKQEVFVLLTIHISGKLALFRSGDESWRII PDMPTPYDDVCVFNGRHFAVDGTGRTVVVGLDSALDLVVVAEPVFGGDKKFLVESEGELLLVDKHMSSNWFCGGGEAADD EENDGDDDNGEGVYRVGWERAVSFDVYRLDQKEKRWVEVTSLGDRVLFLGGECAFSASASDLRVCKGNCVVFKDLALECA IGVFPLDVGRISPLSNHPDYSRLFWPCPDWIWSHCH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| Phobius | 6 | 26 | 21 | - | – | |
| Phobius | 27 | 436 | 410 | - | – | |
| SUPERFAMILY | 36 | 104 | 69 | 3.53E-8 | ||
| PANTHER | 44 | 433 | 390 | 2.7E-127 | – | |
| PANTHER | 44 | 433 | 390 | 2.7E-127 | – | |
| Gene3D | 45 | 84 | 40 | 3.0E-6 | – | |
| SMART | 49 | 90 | 42 | 8.4E-4 | ||
| Pfam | 357 | 404 | 48 | 1.2E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0122300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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