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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0123000 |
| Transcript ID | LotjaGi3g1v0123000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT3G08500.1 myb domain protein 83; Swiss-Prot: sp|Q9LXV2|MYB46_ARATH Transcription factor MYB46; TrEMBL-Plants: tr|I1N6I2|I1N6I2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0123000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:15060879..15063977) extracted from Lotus japonicus Gifu genome v1.2.
CTCTACCTATCAACCAACAAACACAATCCCTCTTCTCTCTCTGTAAATTGCATATTCATATTTTAAGCAAACCCCAAAAC CATGAGTATCATGATTACCATTTGCCTTGTGTGTGTGCCTCTCAAAAACATCATTCATCACCTAGTTAGCTATATAGCTT TCTCATATATAGTAGATCTCTATCACAACCCAACCCACTTAAAAGAAGAAAGCTAGGCCAGCCTCATAGGTTTCAATTTC ATATATAGTTCTGAAATTGAAACAAATGAGGAAACCTGATCTGGTCATGGCAAAAGACAGAGTTATGAACAACAACAACA ACAGTAGCAATAACAACAATGTTGTTAAGAGCAAGCTTAGGAAGGGGTTATGGTCACCTGAGGAAGATGAAAAGCTTCTG AGGTACATGATAACTAAGGGACAAGGGTGCTGGAGTGACATTGCTAGGAATGCTGGTCTTCAGAGATGTGGTAAAAGCTG TCGTCTCCGTTGGATTAATTACTTGAGACCTGATCTCAAGCGCGGCGCATTTTCGCCACAGGAGGAAGATCTCATCGTTC ATTTACACTCCATTCTTGGAAACAGGTACCTTCTTCCTCCCATTGCTATAGTTCACACAATATGATAACACTTATTAGAA TTTATCTACTAAAAAAAGACATGGAATAAATTCTAATAAATGCTTTTCAGTTCACATGCAAACGAGCTGAATAACAAGTT CAACCTTGAAACATTTTAAAATTATTTCTAAATCTATCTTAAGTCTTAACACTTGATTCAGTGATTCTCCAGCTACAAGT TCACTTTTGCAATTCTTTTAATAGAACTCTTTTGGCTTATAAAAAAAAGTTCACTTTTGCAATTCAGTTACAGAATATTT AGTCTAGTCCAAAATAAATTATGCAGGGAGAACTATTCAATGATAATTTTGAGAACTTCTAATTTTAAATTCTGAGATTG GCAGATATATAGAATAATTTGGCATGTTTTATCTTTGAAAATAGGGTTTAGACCAGGCCACCAAGAGGAAGCGTAAGTAT AAAATGACGTAGCCTTGAAGTTTGTCAGGGTTTTTGAGCTAGCTATCAAGGACTATAGCTTCCTACTTAAGGATGACCTA ACCCATTATTGATTAATAACTATAATTGCAAGCACTGCAAATCTTTGCTAATATCTCAATTGTTAAATATTAGAGCCTCT TCTTCCATCAAATGGATGCATTCATGTCATATACAGCTTTTCTTAATTGATCGAGGACAGCACTGGTAGACACAAACCCA ATATATTCAAGAATCAAGACTGATAAAATCTCAGCAAGGGCATTGTTGTCTTTTTCGTCATTACTTTAGTTTATATATTT CAATTATTAGTTGTACAATGGACATTGTTCATGTCATGCCATAATTGATCTGTTGAATGTGCTTAAAATTCAAGTGTGGG TGACGAAATTCCAAATTGGTCAATAATGTCAAAGAATAAAATAAGTGTAAAGGACAATTCTATGATGAACCATGTTAATA TTCTAGTCCACATATGAATTATATCTTAATTACTAACATTTAGTATATATTATATAGAACATAGTCTTTATGTGTTAAAA TTAATTTAAAGAGAAACTCTTATAACTTTGTAAACCATATTTTTCTCCATGTATTGTAACAAAGTGAAGTGTGAATAACA CAAAACCTTATTAACTTAAGATTTTGAGTCAAGAGTTGGATGGTACAGTGGAACTTAACATATTTTTGATGTTATTGACA TTTTGTTTTCTCTTCTAATCATTTCCATTTGAAAATCTCAGATGGTCTCAGATTGCTGCACGTCTCCCTGGTCGCACAGA CAATGAGATCAAGAATTTCTGGAACTCCACTCTGAAGAAGAGATTCAAGATCAACAACAACTTGTCCACCCCATCACCAA ACAACAGTGACTCATCTGAACCCAGAGATCATGTTTCTGGGGGCAACAACAACATTATCATGCCTAATATGAATGAGCAA CATGACCTCATGACAATGTGCATGGATTCATCCTCATCCACATCATCATCATCCATGCAATCCATGCGCAATATGCCACC TTCCATGGTTCTACCTGATCATCAACACTTTGATCCCTTTTTCGCCATGACCAGTGCACCCACCGGTTTCCCTGACTTAA TGTCTGCTGCATGCTTCACACAATTTGGCATGGTTGGTGATGATGATGGTGATGGACTTCATTGTGATTATGGTAAAATG GGGTTAGAGAGTGACTTTTCCCTTCCTCCACTAGAGATTAGTCGAAGCAATAATAATATTGAAGTCCCAATTAATAATAA TAGTAATGTGAAAAGTCATAACAACAACAACCACTTCAATAATAGTTGCTTCAATAACACTGATGATCAGATTCAAAACT CCAACATAGTAGTAGAGGACTTGTTTGGGTTTGGAAATCATAATGGGCAAGCAGGGGAAAACTTAAGAATGGGGGAATGG GACTTGGAGGGTTTGATGCAAGACATGTCCTTTTTTCCTTCCCTTGATTTCCAAGTTTAAACCTTTTTCTTTTCAAATTA AAATTCCCTTTCATATACATACACACATGCCCTTATGACCCAAACCACACTTTAGGGAATTTTGGGCACCCATTCTTTCC ATTATAAACAAAGGACAAAACCCTTTTGCTTGTTATATCTTGTTGTTATACTCATTGTTTCCTTTCTTGTTTACAAAATT TGTAAAACAATTGTAAGTTTTAGTTCTGCAATGAAAATTGCAGTATGTGTATAGGGTGGCCTGGGATTTTCATACATTGT TTGTGCCCTTGTGAAGCACTTCAGCTTGTCATTTTTTCGGGAATAGGTTGTTGCAAATAATCAATTGAAGTTCCTATCGT CAAGAGAAATGTGAATAGTGATAATTTAGAATGTCAAAAGAGCAGAATAATGTTTTAGTAGTTGAAATTGTATGTAGCAT TTGTATAACACAAGGAATAATGTGGAGTTGTAAGTTGTTCTTTAGTGCTAGGAAATATAGATGTACAAGATGTAAACACA TGACAATAAGTATCAACGACTTTGAAGTTCATTAACATCGATATCTCTCTTACTTTCTC
CDS sequence (LotjaGi3g1v0123000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAACCTGATCTGGTCATGGCAAAAGACAGAGTTATGAACAACAACAACAACAGTAGCAATAACAACAATGTTGT TAAGAGCAAGCTTAGGAAGGGGTTATGGTCACCTGAGGAAGATGAAAAGCTTCTGAGGTACATGATAACTAAGGGACAAG GGTGCTGGAGTGACATTGCTAGGAATGCTGGTCTTCAGAGATGTGGTAAAAGCTGTCGTCTCCGTTGGATTAATTACTTG AGACCTGATCTCAAGCGCGGCGCATTTTCGCCACAGGAGGAAGATCTCATCGTTCATTTACACTCCATTCTTGGAAACAG ATGGTCTCAGATTGCTGCACGTCTCCCTGGTCGCACAGACAATGAGATCAAGAATTTCTGGAACTCCACTCTGAAGAAGA GATTCAAGATCAACAACAACTTGTCCACCCCATCACCAAACAACAGTGACTCATCTGAACCCAGAGATCATGTTTCTGGG GGCAACAACAACATTATCATGCCTAATATGAATGAGCAACATGACCTCATGACAATGTGCATGGATTCATCCTCATCCAC ATCATCATCATCCATGCAATCCATGCGCAATATGCCACCTTCCATGGTTCTACCTGATCATCAACACTTTGATCCCTTTT TCGCCATGACCAGTGCACCCACCGGTTTCCCTGACTTAATGTCTGCTGCATGCTTCACACAATTTGGCATGGTTGGTGAT GATGATGGTGATGGACTTCATTGTGATTATGGTAAAATGGGGTTAGAGAGTGACTTTTCCCTTCCTCCACTAGAGATTAG TCGAAGCAATAATAATATTGAAGTCCCAATTAATAATAATAGTAATGTGAAAAGTCATAACAACAACAACCACTTCAATA ATAGTTGCTTCAATAACACTGATGATCAGATTCAAAACTCCAACATAGTAGTAGAGGACTTGTTTGGGTTTGGAAATCAT AATGGGCAAGCAGGGGAAAACTTAAGAATGGGGGAATGGGACTTGGAGGGTTTGATGCAAGACATGTCCTTTTTTCCTTC CCTTGATTTCCAAGTTTAA
Protein sequence (LotjaGi3g1v0123000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKPDLVMAKDRVMNNNNNSSNNNNVVKSKLRKGLWSPEEDEKLLRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYL RPDLKRGAFSPQEEDLIVHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRFKINNNLSTPSPNNSDSSEPRDHVSG GNNNIIMPNMNEQHDLMTMCMDSSSSTSSSSMQSMRNMPPSMVLPDHQHFDPFFAMTSAPTGFPDLMSAACFTQFGMVGD DDGDGLHCDYGKMGLESDFSLPPLEISRSNNNIEVPINNNSNVKSHNNNNHFNNSCFNNTDDQIQNSNIVVEDLFGFGNH NGQAGENLRMGEWDLEGLMQDMSFFPSLDFQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 23 | 344 | 322 | 3.2E-119 | – | |
| PANTHER | 23 | 344 | 322 | 3.2E-119 | ||
| ProSiteProfiles | 28 | 80 | 53 | 17.142 | ||
| Gene3D | 30 | 86 | 57 | 5.7E-18 | – | |
| SUPERFAMILY | 31 | 127 | 97 | 3.36E-28 | ||
| SMART | 32 | 82 | 51 | 8.1E-13 | ||
| Pfam | 33 | 80 | 48 | 2.8E-13 | ||
| CDD | 36 | 80 | 45 | 8.97664E-12 | ||
| ProSiteProfiles | 81 | 135 | 55 | 24.251 | ||
| SMART | 85 | 133 | 49 | 7.6E-16 | ||
| Pfam | 86 | 129 | 44 | 1.4E-13 | ||
| Gene3D | 87 | 158 | 72 | 3.7E-20 | – | |
| CDD | 88 | 131 | 44 | 1.00039E-11 | ||
| MobiDBLite | 138 | 165 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0123000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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