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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0124700 |
| Transcript ID | LotjaGi3g1v0124700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60S ribosomal L6-like protein; TAIR: AT1G74050.1 Ribosomal protein L6 family protein; Swiss-Prot: sp|P34091|RL6_MESCR 60S ribosomal protein L6; TrEMBL-Plants: tr|B7FH81|B7FH81_MEDTR Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0124700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:15257001..15263362) extracted from Lotus japonicus Gifu genome v1.2.
TGGAATTCCACATGGCATTCTACAAGCTCTTCTCTCCTTTTTACTGTACACATGACATTTCCTTCTTTTTTCTGTTTTTT TATCAAGCTCCACACATGATTCTCTCTCCCACTATCTTCCTTCATTATTAAGAACTCATTCTCTCTCCCAAAGAGTGCAT CTTCCAATTCCTTTTTTAAATGCTTCACACATACCACAGAAGCATGCAAGCCTTCATAATTATATTTTCACCATTCCAAT TAATCTCTTCCATCAATGGCCACCATTATCATATTTCTGACCAATCATATACCCTGCACCAAATCCTTATTCAAATCTCC CCAAGATGACACATTGGGAACCAAATCTGCATCTCCAAAAGTTTTCAAATTTCAAATTTACTATCTATATTTATTGTTTT ATTGTTCTCATTCTCACTACCAACTCAAATTTCCCAGTCTTGCTTCACAGGTCTCATCTCCTTCGCGCTCTCCTTCCTCA CCTAGGTCTCTCTACCACTCTGAGGAACTCAAGTCCTCCTTCTTCAACTTCTTCTGCTCCCAAGTCCCAACCCGAGCCAG AACTTGCGATCCGTCCCCTTCGGCTTCCTCTCTGACTGGCGTTTCAAATGCAGTGGAGTACTTACTCTCCAAGGTCGGCG ATCTCATGATCTAGGCTCTTCGCAAGTAATCCCCTCTTCCCTCCCCTCCCCCCTTTATTTTCCAGAGTTTTCTTCATTTG ATTCCTTTTCATCTCTCTATCTCTCTATATAACCCATAGTTTGCTGAGTTTGCTACAACTTTGTGTTCGGATAGATGTCA TATCGGACGGACATTTGGGTCATTTTGGGAACAATTGGTTCTTTCTAGGTGTTTTTTTTAAGGCTGGAGAAACCTTTCCC CATTTTCTTCTTATTCATTTTGTATTTATTGGTCTTTCTTCTTTACTTTTTGTTCAATTTACCCTTTCATTCCCAGAATA ATTTAAAATTAAAAAACCTAACAGATGATCTTACTTTGATTACCTATAATTTACTGAGTATTAGATTTCATTTTATTTAT TCATTCTGCACTGAATTATGAAGAAGCATGAGTTACTTTTCAGCTGATTGATTTTTTGAGCTTTTGTTCTGTCTCTCATA TTAGTGTTTATGGGTGTTGAATCTTTAAATATTTCTATGAAGCATGACACAAGTTGGAAACACTTCAGCAACAACTGTTA TAGGTAATAAAAGTAGAAAATTTCCTCAATCCATAGATGCACTTGGTTTCAACTGTTATGTGTCTTCTTTAAACAGTGCA ACTTATTTTGAATGCTAATTGCGTTGTTTTTGTTGCTTAATTTTTACTATAATGCCTTTTTTTAGAATGTGTATCTTCTG GGCTTCTGGCCACTTTTATAAAAATTTTGGCATTTGTAGGCCATTGTATGTTAGTTAGATAGTAATTAATATTAAATTGT TAGCATGGGGGAATTATATATAAAAAAGGATAGAAGTATTTATTGAGGGATTACTTGGAGATTGTCTAAGTTCCACCTGT AGCTCGGGCTAATGTAAAAAGTTAAAACAACAACCATTTTAGAACAGAGAGAGTATGTATTACTAATTTTTTTGCTTATA AAAAAAAATGTATAACTAATTTTTCTTAATTTTTTAAATAATTATAGAATTAAATATGTATAGATATTTATAATGTACGA TAATTTAATGATGAAATTAGGAATCATTAATATTCAAAATATTTGTTCATGTATAAATTACTGGGACTAACATTTTACAT GTAAATAATTTTATTTTATATTTAAGTCAAAGATTTTATTTAATATAATTCAGTTCCGTTCACTTTTCAAGCTAATTTTA GAAATTAATATATATAAAAATATGATAATTTGATAATGAAAAAATATCGTCCATAGATTAGAAAATGTTAATTTGTTGAT ATTTATTTATGTTTAAATTATATGGTTACAAACTGCACGAGAAGAAATGAACATGAAAATAATATTATGTGTAAATATGA TGATTTTGGCCAATTAAATTCTTTATTTCGAAACCTTTATATTTGTTAAATGGTTGTATGAGTTTAAATTACTATAGTTG AGTGACTCAATTTATGTTTTTGAATTATCTATATTCTTATGATGATTGTACTTTCATTCTTAGCATCTCAAATTTTTATA TCAATATATAGTATTGATTAATGTTCAAAGAGTTTAATTTCTATGCACTGATGGTGTAAAGTTTTTTTACAACGTTAACC AATCAGATTTCAAGAATGTGAGAAAATCTCTTTTTATTTCATTTCGTTAATTGACGTGTCACATCCTTAAAATCTGATTG GTTGACGGTGTAAAAAAAACTTTACACTGTCGGTGCATCAACCTGTTTCTCATGTTCAAATACAATAGTAAAATTTGCCG TGCAACAGCACGGGTAGAAAATTCTAGTCAATTTTTCAAACCATTAGTAGTCCGTTGTGAATTATTCGATTCTCTTGCAT AGTACATTCAATTAGTGGTTTGACTTTTAACGGGTCATTTCACCAATTCCCTTGATCGATTTTTGTAACTCACTATATTC TTAATTGTGACTTAATCTGTATATTATAGGGATTGTCATTGATGAAAAGGAGAGGAAGTTTTTCACTAAAACATTTAAGG TCACATAGGCATCTAATCAGTAAACTAATATGAAGGGAGGGACAGAATTACATTAGGCATCCCCTTCCAAGGAAAATAGG TTAAGGAGGTTGTTTTCATATCCTTAAATTTTTTTATCATTTTGATAGGAAGAAATTTCATACCTAAGCAAGAACTAAAA ATGAACTGCATAAGTTAAAATCAAAACAAAGAGAGCAATGTGCAACTTTTTAGATAATATTTCATAAAAGAAACCTTACG GAAGACAACCCGGACATGTGGCTTCATCCGGAACTAGCCACAACCGATCACAAAACGGCCAAAACCGATGAAAAATGGTG ATAAAAAACAGGTTAAACTGGTTTTTTTTGAAATGGAATAGCAAATATATTAATCAACGGAAGACATAGAAGCCATTACA TCATAATTCACGAAACGTAAAGCGTCACTCAGTACCTCTTCCAACCACACCATATCCGTAAAATTGGAAGCGATAGTTAA ACTGGTTTTTTTAATTAACCCTTTATTATTTATTTTTATCACAAAATATATAAAAGATGAACAATATATTATTATTTTTA AAACTTAATTAGTCTAAATTTATTAATATCTTGTGTAAATATATTACAATGTACAGTTCTCAGCTATTTTTTTTTCATAT ACATGGTTCAATGATCGAACCCCTCTGCACAAAATATTTAAGGAGCTCAATTATCTCATTATGCATACATCGCATATGGC ACACACTCATACATATCCAAGGATCACGACCACTATACGGTACGCTTGTCAAGGAATATTATCCTACATGACATTGTTTG ATAGTCGACATCATTCTATAAATAACATATAGCACTACTCATCAGGTACACACAATATGCCATAACGTTACCCTACCAAA ATTCTGACTTGGGCATCAGGATGCCTTTGCTGGTACTCCTCGAGCGCTCCAACTTGACGATAGAGGACCTCGAACATCAA CAAAGGATGATAGATGACCTTCAACATGATGATGACAAAGAACCCCCGACGTGACGACGAAGGATCCCCAACATGATGAT AACGGACCTTCTACGTGATAACGTACAAAACACCTAACTCTCCAGCAGAACTGAGCTAAGACAACGGTTATCCTTCTGGC CAGTTCCACCTGTTGAACAAGTCTAAACACCACCTTATTTTAGCGTGTGGTCGTCAATAATTTAACTTCTACAAACAAGA AATGCAATATTTTTATTGAGTTACATAAAACTATTCTGATTTAGAATAGCCCGTTTGGATATGAATAAAAAAGCACCTAT TGGAGCTTCTCTACTAAAAAAACACTAAATAAGTTTCAATAAGTGCTTTTTGGCTTGCATCCAAACAAATGCTAAGTTAA CTTTGGCAAATTCAATAGTTACTCACAAAGCCCAGCACTCATATATTATACGCGCGTTTTCACCTTCAAATTAGGGTTTT GCAGCGAGCACACAGGGCAACAATGGCGCCGAGAAAAACCCCAAGGGTGACAAGGAACCCTGATTTGATCAGGGGAATCG GCAAGTACTCAAGGTCCCAGATGTACCACAAGAAAGGCATCTGGGCCATCAAGGCCAAAAACGGCGGCGTTTTCCCCCAT CACGATGCTACCCCCAAGCCCCAAACCCTAGCTTCGAAGCCCCCCAAGTTCTACCCCGCTGATGATGTCAAGAAGCCTCT CCTCAACAAGCATAAGCCCAAACCCACAAAACTCAGGTATCACATTCGTCATTTCCATCACTCCATTTTTTTTGGTTTGC TAGAAGTTTTATTTGGATTAGTATTTTTCTAGTAAATTAGGATCAATGTTTATGATTTTTTGTTTTTTGAGCTTAAATTT TGATACAAGTTATGTTCTTGTATATGTTAATTGACAAAATGAACTTTTGTAGTGTTAGAAATTGTTAGAAATTGTGAGAA ATGCACACTCCAGTGAATTTTTTTTCTCACTTCTAGCTTGGGATGTGTGGAATGAGGTGTGCATTGGAACTGGGATGAGA AATGTGGATTTTTTTATGTACTGTGAAATTAGTGTGTTTTGTTTTGGTTCTGGGGGCTTTTGAAAAGTGAATCTTATACT GGGTTTGCTTTTGTCATCAGGGCTAGCATTTTGCCGGGGACGGTGCTGATTCTGCTTGCTGGGAGATTTAAGGGGAAAAG GGTTGTTTTCCTGAAGCAGCTTCCATCTGGGTTGCTTCTTGTCACAGGTATGTGATGAGATTGAGATTTATTGGTTTCTG TTCATTTGGTCAATGCATGATGGGTATTGGTGGCAAGGGTTCATTTTTTTTGGGATCATAATTTATGTCAATCAATGTTA TTTCTATATCATGTGTTCTCGATTGGTTGGTTTCTGTTTATGTGTTCAATGAATGTTTGCCTGATGGGCCTTGTTGGTGG ACAAGGGTTCATTTTTTGTGGGATCAGAATTCATTTGAATCAATGTTATTTCTATTTCATGTATTCTCGATTTACTTGTG AGAAATAGTTGATGCTAATACTGCATCTTATGTTCGCCTGCTGTTTTAGCATACTAAGTTCTTGTTTGTTCTAAACTTCA ATTTTTAGGACATAATTGCCTACCCTCTGGGAAAAAAACACTGGCATTGTGATTATGATTTGTAAGCTATGCTGATCTCA AAAAAAAGCTAATTCAAATGAACTTAATGTCATCTCGTAAAATATTATTTTCCTTTGTGCAAATGATAGCGGTTAAGTTA TTGAATGAGTTTCTGGGTGTTTTTTCATTTTAGACTTTGATACCTCTTGATGTAGATAATTTGTTACTAATTTCAAATTT TTACTAATCTGTATTTCCCCTCAAGCATTTGCGCTGCTATCTGATATGTACACCATTTATTTTTGGTCTCTCTTCTCATG TTGATCTCTTTGCCATTTAAGGTCCATTTAAGATCAATGGAGTTCCTTTGAGAAGGGTGAATCAATCTTATGTCATTGGT ACGTCCACCAAAGTGGATATTTCCGGTGTTAATGTTGATAAATTCAATGACGAGTACTTTGTTAAGGAAGCCCAGAAAAA GAAACAGAAGGGAGAAGGCGAGTTCTTCGAGGCAGAGAAGGAGGTTGGTTTTTCTGTTTTAATTTGGTGTTATTATTTTT TCTTGTTATTTTCAATTGCTTCTGTGATGCTGAGCTCTATTATTTTCTTCCTAACGTAGGAGAAAAATGAGCTTCCACAA GAAAAGAGAGATGCCCAAAGTACAGTGGACTCTGCAATATTGAAAGCCATTGAGAGTGTTCCGGACCTGAAGTCTTACCT GGGTGCTAGGTTTTCTTTAAAGTCAGGAATGAAGCCACATGAGCTAGTCTTCTAGAGTGCTGAATTTATTTTTGCTTATT TAGTTTTTGTTCAGGTTGTTTCTAATAGTTGTATTGTTCTGCCTTTCTTGGTAATTAAGTCTTAGCAACGTTTTCATCTT CCAATTTTGATCTTAACAGTTATATTCCTTTACCTTAATTTTGCTCCCTCCAAACAAAAAGAAAAGATGCCATTTGTATT TTGTTGGGATACTAATATGGTGATATATTATCCGATTATTGATTGTTATATTATTTGGCAGTCGAAGTATTTGTTCTAGG TTTAAATTTCTACTTGAACTTTTCTGCCAGTGCTAAGTTGTTGTATACCCCTTTTTCTTATGTAGTTGTATATCTTAATA TAATAGGATACTGATTGAGCTGGAAAAGTACCACCTTATTTT
CDS sequence (LotjaGi3g1v0124700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCCGAGAAAAACCCCAAGGGTGACAAGGAACCCTGATTTGATCAGGGGAATCGGCAAGTACTCAAGGTCCCAGAT GTACCACAAGAAAGGCATCTGGGCCATCAAGGCCAAAAACGGCGGCGTTTTCCCCCATCACGATGCTACCCCCAAGCCCC AAACCCTAGCTTCGAAGCCCCCCAAGTTCTACCCCGCTGATGATGTCAAGAAGCCTCTCCTCAACAAGCATAAGCCCAAA CCCACAAAACTCAGGGCTAGCATTTTGCCGGGGACGGTGCTGATTCTGCTTGCTGGGAGATTTAAGGGGAAAAGGGTTGT TTTCCTGAAGCAGCTTCCATCTGGGTTGCTTCTTGTCACAGGTCCATTTAAGATCAATGGAGTTCCTTTGAGAAGGGTGA ATCAATCTTATGTCATTGGTACGTCCACCAAAGTGGATATTTCCGGTGTTAATGTTGATAAATTCAATGACGAGTACTTT GTTAAGGAAGCCCAGAAAAAGAAACAGAAGGGAGAAGGCGAGTTCTTCGAGGCAGAGAAGGAGGAGAAAAATGAGCTTCC ACAAGAAAAGAGAGATGCCCAAAGTACAGTGGACTCTGCAATATTGAAAGCCATTGAGAGTGTTCCGGACCTGAAGTCTT ACCTGGGTGCTAGGTTTTCTTTAAAGTCAGGAATGAAGCCACATGAGCTAGTCTTCTAG
Protein sequence (LotjaGi3g1v0124700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPRKTPRVTRNPDLIRGIGKYSRSQMYHKKGIWAIKAKNGGVFPHHDATPKPQTLASKPPKFYPADDVKKPLLNKHKPK PTKLRASILPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFNDEYF VKEAQKKKQKGEGEFFEAEKEEKNELPQEKRDAQSTVDSAILKAIESVPDLKSYLGARFSLKSGMKPHELVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 232 | 232 | 1.9E-147 | – | |
| PANTHER | 1 | 232 | 232 | 1.9E-147 | ||
| Pfam | 5 | 57 | 53 | 2.2E-14 | ||
| CDD | 80 | 232 | 153 | 4.93491E-84 | ||
| Gene3D | 86 | 170 | 85 | 1.4E-12 | ||
| SUPERFAMILY | 87 | 172 | 86 | 6.92E-25 | ||
| Pfam | 125 | 232 | 108 | 7.0E-39 | ||
| Coils | 161 | 181 | 21 | - | – | |
| MobiDBLite | 171 | 194 | 24 | - | – | |
| MobiDBLite | 171 | 192 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi3g1v0124700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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