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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0126500 |
| Transcript ID | LotjaGi3g1v0126500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox associated leucine zipper protein; TAIR: AT5G06710.1 homeobox leucine zipper protein; Swiss-Prot: sp|A2YW03|HOX27_ORYSI Homeobox-leucine zipper protein HOX27; TrEMBL-Plants: tr|A0A0S3SJN3|A0A0S3SJN3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0126500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:15545346..15548012) extracted from Lotus japonicus Gifu genome v1.2.
CTGGTCTTCCTATGATCACGTTGGACTCTCTCTCCTATTTATGATTATAAAGACTCTTCTCTTTCAGGCCTCCTCCTGAT TTCTCAGTCCAAGCCATCCCTTTCTACACTCTGCATATTCCTCTTCTATTTCTATTCTTCTTTCTCTTTGCCCTGTGTGC AATTTTGCCTATGCAGAACAAGAGAAGAAAATCATGGAGCTTGGTCTGAGATTAGGAGACTCTTCAACTTCAAACCTTGG TGAAGCTTCCAATAATCAACTGGATTTAGGCTTCAACACCACCTTATCAATTGGTCCAATCACAACTTCACACAAACAAG AAGAAACTAAGCCCAAAAAGGACAATAACAACAACAGTCAGAGAAATCAAGATCACCATGAAGAAACAAGTCAGGCAAAC AACAACCCTGTCCCCCAACAGCTTGATCTTCTTCCTCTTCTCTCCTTTCCATGGCATCCAGCTTCTGAAAATGGTAAAGA CCCATTTTTCCATATCATCCCCTGAAGCGTTTTCCTCTAGAATATTTTTCCCCATAGACTTGATCTTCTTTTAAAACCCA ACTTTTAATGTGTGATTTTTCTTAACACCAACACAACCTTAGTTAAAAAAAAATTGATTTTATTATTTTTATTTGATGTA ACACGGTGAAGGCTCTGTTCACAAATGCAGGGACTTTATCAGCTGAGTTGGGGGGCTCTGGAAGGACCATGAACGTGCTG CCTGCGGCGGCGGTGGTGGAGGATGAGGCGGAGGAAGGGGCGGCGCTGTCATCATCGCCTAACAGCGCAGCGTCTTCATT TCAGATGGATCTGTGCATGTACAGCAGAGGAGGTAGTGGTGGCGGTGGTGGTGGGAGTTTCAGTGGTTCAGGTGGGAAGA GGGACTCTGATGGTGAGGCTTATGATGAAGATGAAAACGGTGGGGGTGGTGGTGGAAATAGCACCAGGAAGAAGCTTAGG CTCTCTAAGGAACAATCTGCTTTCCTTGAAGAGAGTTTCAAAGAACACCACACTCTTAACCCTGTAAGTGTTTGTTACTG TTTTTTTTACATCGGAAAGATAAATTATATCTATCTATCGGGGATTGATCTCTTGATCTTTCCCTCCAACTCATGTCACT CCACTCTTACTATTTAAGTTTCTTCAGTTTGATCCCATTATTACTTATTTTTAGTAACAGTGGGATTCACTTTGTTTTTC TTTAATTTGTGTAGAAACAAAAACTTGCCCTTTCAAAACAACTCAATCTACGCCCTCGACAAGTAGAAGTCTGGTTCCAA AACAGAAGAGCAAGGTACAAATCATGTTTTAGTATCTTTGGTTTCCCAATTTCAATAAAATCAATTCTGGATGAAAATAT ATTGATGTTTGTGGTTCGTATTTTAGAGAATTAATTTCGGGCTCAATATCATAAATTACGGTAGAAGCAAGACATATGAA CTTTTACAACTTAATTTCACAATATTAACTGGTAAAAATCTTTTTTTCCTAACCTCATTCAAACTTCAATGACTATTGCT ATTGCTGATTTTTTTATTGCGAGGTCATTTTTTGATTTTTTTTTCTTACCATTGCATATTTGGAAATTCTTCTATAATTC ATTCATTTGAATCTAAAATCAAAATTAATTTTGTCAAGAAATTTAATATACATGAGTAGCTTCTCAGGGTCAGAATTCAA AATTGTATCTGCGAAATAGAACTTGATCTGACCCGAACATATTAATAATAGTTTTAATTTGGAGGACATTAGCAACCGTA TAAGCTGATCATATTTTACATGGGTGCATGCAGGACTAAGCTGAAGCAGACAGAAGTGGACTGTGAATATTTGAAGAGGT GTTGTGAGACACTGACAGAGGAGAATAGAAGGCTTCACAAAGAGCTTCAAGAATTGAGGGCTTTGAAGAAATCAAACCCA TTCTACATGCAATTACCAGCCACCACCTTGACCATGTGCCCATCTTGTGAACGTGTCGCCACAAATCCAACATCGAATGG CACCAATAATGTTAATACTAATAACAATAATACCTCAGCCACAGCCAATAATACCAGCAATGACTCCAATTCCAAAGCCA TTGGATTCCCATTTGGCAGCAAACCCAGGTTTCTTCCATTTGCTCACACCAGTCCACAGCATCTTGAATTGAATTGATTA TACTGCCCAAGGTGTCAAAGTTCCAACACTAATATTGCTGAAGCTTGGAAATTGATTTCATTTTGTATATAGGGGAAGTT TTGATTATCGATTTTTTTCTGTCTTTTCTTTAGTTTTTTGGGGTTGGTATAGAATTCTAATATCTTAGTTTAATTTTTAT AGTTTGAATCTCTCTTCAGTCTTGATATTCCTTCTACCTCGAGTTTTATTGATGGTGAATAAAAAAAAGCAGAATTATAT GTTAGACAGTAAAGATATATATAGTTAATATGTAATGAATTTATTTTTTGATGTTTAGATAGAAATTCACTCCCATTTTG ATGTTGGTTGTGAGATAGTAATTCTCTTCCATTTCTCTTATATATATATATATATATATATATATTTCTTTTTGTGGTCC TCGAATGATAGCTCAAGTGGTAAGAGTTAGGGGACATATGGGTTAAGTATGGGGAGATTCAAGATTCAATTCCTGGCGGG TGCAATTTATCTTTCCGATGTAACAAA
CDS sequence (LotjaGi3g1v0126500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTTGGTCTGAGATTAGGAGACTCTTCAACTTCAAACCTTGGTGAAGCTTCCAATAATCAACTGGATTTAGGCTT CAACACCACCTTATCAATTGGTCCAATCACAACTTCACACAAACAAGAAGAAACTAAGCCCAAAAAGGACAATAACAACA ACAGTCAGAGAAATCAAGATCACCATGAAGAAACAAGTCAGGCAAACAACAACCCTGTCCCCCAACAGCTTGATCTTCTT CCTCTTCTCTCCTTTCCATGGCATCCAGCTTCTGAAAATGGGACTTTATCAGCTGAGTTGGGGGGCTCTGGAAGGACCAT GAACGTGCTGCCTGCGGCGGCGGTGGTGGAGGATGAGGCGGAGGAAGGGGCGGCGCTGTCATCATCGCCTAACAGCGCAG CGTCTTCATTTCAGATGGATCTGTGCATGTACAGCAGAGGAGGTAGTGGTGGCGGTGGTGGTGGGAGTTTCAGTGGTTCA GGTGGGAAGAGGGACTCTGATGGTGAGGCTTATGATGAAGATGAAAACGGTGGGGGTGGTGGTGGAAATAGCACCAGGAA GAAGCTTAGGCTCTCTAAGGAACAATCTGCTTTCCTTGAAGAGAGTTTCAAAGAACACCACACTCTTAACCCTAAACAAA AACTTGCCCTTTCAAAACAACTCAATCTACGCCCTCGACAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACTAAG CTGAAGCAGACAGAAGTGGACTGTGAATATTTGAAGAGGTGTTGTGAGACACTGACAGAGGAGAATAGAAGGCTTCACAA AGAGCTTCAAGAATTGAGGGCTTTGAAGAAATCAAACCCATTCTACATGCAATTACCAGCCACCACCTTGACCATGTGCC CATCTTGTGAACGTGTCGCCACAAATCCAACATCGAATGGCACCAATAATGTTAATACTAATAACAATAATACCTCAGCC ACAGCCAATAATACCAGCAATGACTCCAATTCCAAAGCCATTGGATTCCCATTTGGCAGCAAACCCAGGTTTCTTCCATT TGCTCACACCAGTCCACAGCATCTTGAATTGAATTGA
Protein sequence (LotjaGi3g1v0126500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELGLRLGDSSTSNLGEASNNQLDLGFNTTLSIGPITTSHKQEETKPKKDNNNNSQRNQDHHEETSQANNNPVPQQLDLL PLLSFPWHPASENGTLSAELGGSGRTMNVLPAAAVVEDEAEEGAALSSSPNSAASSFQMDLCMYSRGGSGGGGGGSFSGS GGKRDSDGEAYDEDENGGGGGGNSTRKKLRLSKEQSAFLEESFKEHHTLNPKQKLALSKQLNLRPRQVEVWFQNRRARTK LKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKKSNPFYMQLPATTLTMCPSCERVATNPTSNGTNNVNTNNNNTSA TANNTSNDSNSKAIGFPFGSKPRFLPFAHTSPQHLELN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 74 | 74 | - | – | |
| PANTHER | 1 | 342 | 342 | 7.1E-139 | – | |
| PANTHER | 1 | 342 | 342 | 7.1E-139 | – | |
| MobiDBLite | 7 | 40 | 34 | - | – | |
| MobiDBLite | 41 | 64 | 24 | - | – | |
| MobiDBLite | 149 | 190 | 42 | - | – | |
| SUPERFAMILY | 171 | 243 | 73 | 6.42E-19 | ||
| Gene3D | 180 | 247 | 68 | 2.8E-18 | – | |
| ProSiteProfiles | 182 | 242 | 61 | 17.038 | ||
| SMART | 184 | 246 | 63 | 6.7E-16 | ||
| CDD | 186 | 243 | 58 | 1.67709E-15 | ||
| Pfam | 186 | 240 | 55 | 2.6E-15 | ||
| ProSitePatterns | 217 | 240 | 24 | - | ||
| Pfam | 242 | 276 | 35 | 5.1E-10 | ||
| SMART | 242 | 285 | 44 | 4.8E-25 | ||
| Coils | 255 | 278 | 24 | - | – | |
| MobiDBLite | 301 | 334 | 34 | - | – | |
| MobiDBLite | 301 | 335 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0126500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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