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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0126700 |
| Transcript ID | LotjaGi3g1v0126700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 Ubiquitin ligase family protein; TAIR: AT2G44410.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|I1LVG7|I1LVG7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0126700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:15574340..15576592) extracted from Lotus japonicus Gifu genome v1.2.
AATGCATATCATCACATAAGAATTTTTATCAAAAGCATGCTTGTGCCTAAAATTTGAACCCAGTTTCTGAGATTTCAGAG AAACAATTCCATTGGATTCAACATTTCATCCCTTTAGCTTTTGAAAATCTCCACTCATCTTCAATCTCTGCATTGTTCTC CTAACAACAAAACCTTGTTTGTTTTTCTGATTCACAGAATTCGAGTTCAAACCCCAGTCATCACCGAATTACCTGAAAAT CTCAGCAAGAAAAACCACCCAAATGCTCATCATTCATCAACTCTTTTCGGTAATTCCTCAGTTTTTTGTTCCATTTCTAA TCGATTTGTTTTTTTCCCAGCATCATCATATGAGGTTTTGTTGATTGTTTTTTTTGTTTGTTTGCTAGTTTCTTTGATAT GTTTTGAATTAATTCAATTAGGTTTCTTCGAATTGTCTTTTTCCTGATTCAGAATAATTGACTTTGGATGCTTGAATTTA TGGATTTTGTACTTTACCATTATCTGGCAAAAGCACTTTAAGAATGATTCTTGCAATATGAATTATTGGTAGCAGATTTT AGGTTAGATTGAGCAAAGGAGAGTGAATATTCAACTCGGTTCGATCGTTTATTATGCGAGAATTATAATGTGGGTCTGCT GTTGCTCTTGTTCTTGTTTTGGTATGATCACTTATGTATTAGTTTGTGTTTTAAAACTTTTGCTTTTTATCTCTGTTAGG GGCTTTAAGCATTTGGAATATGTTGCCGGTGGTGTAGATCGATCTTAGCAGAGAATTGAAGTTGCAATGGATCAGCAGCC TTTGTACCCGATTCAAGAGCGCCTCAGGATCCTTGAAGGAGTTGTCTTCAGGGATAGGCAGCGGCAGAGGCGGCGAGAGG GTGAAACTCCAATTCAGATAACTACCTCTACCGGAGAATCGGTTACAGTAGATAGTGATGTTCAAGATGAAGGCAGGGTG CACCGGGAAGAAGTTGGTAGTGATGTTGAAAAGGCGGCGCGCGAAGGTTGGGACCTGCGCAAAAGGAAAAGTGCCTATTT AGTTGCTAAAGCATTGGGGTTGGAAACATACACCGATGAGGCAGAGGGATTTAGTGGAAGCTTTTACGATTGTAATATAT GCTTGGAAATGGCAAGAGATCCTGTTTTGACCTGCTGTGGTCATTTGTTTTGCTGGCCATGCTTCTATAGGTTGTCATAT GCTTATTCTGTTGCAAAGGAATGCCCTGTCTGTAAAGGAGAGGTCACTGAAGCCAGCATTATCCCAATTTATGGCAGTGC AAGTGTCGATTGTATTGATAAGTTGGGATCGGAAGGAGATGCTTTGATAGTTCCTGATCGACCCCATGCATCGAGAATTG AGAGTATTAGGCAGCAATGCAGAAGCCCAACAGCTACTCCAATCCATGAAATGATGATTAGTTACTTGTTACATAACTTA GCTTCATTTGAAGAGCAATTTCAATTCGAAACCCCTGGTGCTACAACCAGTAGACCTAACGATTTGGCTGCTCAATCTCG CCAGGAGGCAGAAAATAGTCAGCATACTTCTTCCTATCAATTTTCAACGTTGCCATTGCACGAAGATGCTTCACTTTCAT ATGATTTGGCAATTGATCATTTAGATATTCTCTTTCGTGAATTCGAATCATTCCATATGAGATTGGTTTCTGACAATAGA GGCTCACCTTTTAGCATTGTTGCTATATCAGGGCGTCCTAATGGAGATGTTGCTGCAACCAATTCTGCAACCCCTTCTTT TGTTTCTCCCATAAGTAGCGAGGATGACTTTAATGCTGTTTCGGACACTGATATCCACACAACCAATAGTAGTACACAGA CAATTTCTGCATACCCACCATCTTCTACTGGAACAGATCTTTGAAGTGAGTTTCAAACGAGCCCGGAAGGTGATAGTTTA CATGAGGGCCCTTTATGAAAGAACAATTGGTTGTGTTGACAGAAGGTTACCATTTGTATGCATGCACTGTGATTTATCTG TTGCACAACATTTTCTGTTCATTTGTCTGAAACAAAATATGCTTTCTGGTTTGTGTATGAAGTGGAAACCACAGTTTTGA GCAATTTGTAGAGTGCCCTCAAGGATCTTACATGACATAAGATATTCTCAATTCAAGCTTGAATAAGAACTCAGAAAGAT AACCCCGTTTACTTGTTTCAATTTTAGATTGATCTTTTTCTGTTAATTTGTCTGAAACAAAATATGCTTTTAAGTGATGA CCTCACATTCTTT
CDS sequence (LotjaGi3g1v0126700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCAGCAGCCTTTGTACCCGATTCAAGAGCGCCTCAGGATCCTTGAAGGAGTTGTCTTCAGGGATAGGCAGCGGCA GAGGCGGCGAGAGGGTGAAACTCCAATTCAGATAACTACCTCTACCGGAGAATCGGTTACAGTAGATAGTGATGTTCAAG ATGAAGGCAGGGTGCACCGGGAAGAAGTTGGTAGTGATGTTGAAAAGGCGGCGCGCGAAGGTTGGGACCTGCGCAAAAGG AAAAGTGCCTATTTAGTTGCTAAAGCATTGGGGTTGGAAACATACACCGATGAGGCAGAGGGATTTAGTGGAAGCTTTTA CGATTGTAATATATGCTTGGAAATGGCAAGAGATCCTGTTTTGACCTGCTGTGGTCATTTGTTTTGCTGGCCATGCTTCT ATAGGTTGTCATATGCTTATTCTGTTGCAAAGGAATGCCCTGTCTGTAAAGGAGAGGTCACTGAAGCCAGCATTATCCCA ATTTATGGCAGTGCAAGTGTCGATTGTATTGATAAGTTGGGATCGGAAGGAGATGCTTTGATAGTTCCTGATCGACCCCA TGCATCGAGAATTGAGAGTATTAGGCAGCAATGCAGAAGCCCAACAGCTACTCCAATCCATGAAATGATGATTAGTTACT TGTTACATAACTTAGCTTCATTTGAAGAGCAATTTCAATTCGAAACCCCTGGTGCTACAACCAGTAGACCTAACGATTTG GCTGCTCAATCTCGCCAGGAGGCAGAAAATAGTCAGCATACTTCTTCCTATCAATTTTCAACGTTGCCATTGCACGAAGA TGCTTCACTTTCATATGATTTGGCAATTGATCATTTAGATATTCTCTTTCGTGAATTCGAATCATTCCATATGAGATTGG TTTCTGACAATAGAGGCTCACCTTTTAGCATTGTTGCTATATCAGGGCGTCCTAATGGAGATGTTGCTGCAACCAATTCT GCAACCCCTTCTTTTGTTTCTCCCATAAGTAGCGAGGATGACTTTAATGCTGTTTCGGACACTGATATCCACACAACCAA TAGTAGTACACAGACAATTTCTGCATACCCACCATCTTCTACTGGAACAGATCTTTGA
Protein sequence (LotjaGi3g1v0126700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQQPLYPIQERLRILEGVVFRDRQRQRRREGETPIQITTSTGESVTVDSDVQDEGRVHREEVGSDVEKAAREGWDLRKR KSAYLVAKALGLETYTDEAEGFSGSFYDCNICLEMARDPVLTCCGHLFCWPCFYRLSYAYSVAKECPVCKGEVTEASIIP IYGSASVDCIDKLGSEGDALIVPDRPHASRIESIRQQCRSPTATPIHEMMISYLLHNLASFEEQFQFETPGATTSRPNDL AAQSRQEAENSQHTSSYQFSTLPLHEDASLSYDLAIDHLDILFREFESFHMRLVSDNRGSPFSIVAISGRPNGDVAATNS ATPSFVSPISSEDDFNAVSDTDIHTTNSSTQTISAYPPSSTGTDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 268 | 264 | 4.0E-54 | – | |
| PANTHER | 5 | 268 | 264 | 4.0E-54 | – | |
| MobiDBLite | 26 | 49 | 24 | - | – | |
| MobiDBLite | 34 | 49 | 16 | - | – | |
| Gene3D | 96 | 223 | 128 | 1.9E-14 | ||
| SUPERFAMILY | 107 | 158 | 52 | 2.16E-14 | – | |
| CDD | 107 | 151 | 45 | 9.93905E-23 | – | |
| Pfam | 108 | 155 | 48 | 2.7E-8 | – | |
| SMART | 109 | 149 | 41 | 2.9E-8 | ||
| ProSiteProfiles | 109 | 150 | 42 | 12.711 | ||
| MobiDBLite | 229 | 257 | 29 | - | – | |
| MobiDBLite | 346 | 365 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0126700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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