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LotjaGi3g1v0132300.1

Overview

Field Value
Gene ID LotjaGi3g1v0132300
Transcript ID LotjaGi3g1v0132300.1
Lotus japonicus genome version Gifu v1.2
Description Myb transcription factor; TAIR: AT3G12720.1 myb domain protein 67; Swiss-Prot: sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86; TrEMBL-Plants: tr|A0A151SWA9|A0A151SWA9_CAJCA Transcription factor MYB86; Found in the gene: LotjaGi3g1v0132300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:16574324..16576052) extracted from Lotus japonicus Gifu genome v1.2.

GAGAGATGGGGCACCGTTGCTGCAGCAAGCAGAAGATCAAAAGAGGATTGTGGTCTCCTGAAGAAGATGAAAAGCTTCTA AAATATATCACCATTCATGGCCATAAAAGTTGGAGTTCTGTTCCAAAGTTAGCAGGCATTTTTCTCTCCCTCACCCTTCT CTTCATGTATGAGTTAGTGTATTTGTGTGTTTTTTGCCACCTCTACTCATGGCCTCAGAGTTTAAGTTGATAAGGTCCAA AGTTTGTTTGTGTATATCAAAGTTGGAGTATGAAGGAATTTGAACCTTTCGATCAAGATAGGACAACTAAGATGTTCCTT CAAAATTGGAGAGCTAAGATAAACTCTTCGGTTTGATCTAGATTGTATGGTTCCAGTTCCTTAATTGCGCGAATATAGGA TTTTTTTAACTGCAGTGAATCCAAATCTGTCTTGTTTGCTGGCGTTTCTTTTTTCATTCATTACATATGGTTTTAGGAGT GTGTTTGTTTGTTTGTGTACTGATAGTACAAACAAAATATTATATTATTCTTGATATGTGCAGGCTTGCAGAGATGTGGA AAGAGTTGCAGATTGAGATGGATTAATTATCTGAGGCCTGATCTCAAGAGGGGCACCTTCACTGCAGAAGAAGAGCAGAT TATAATTGACATTCATAGAATTCTGGGAAACAGGTAAAGGATACATTAATTACAAGCAAAGGAACTGAGACAGAGAAACC GTAATGATACTTAGCTTAAACACTCAAACAGTGCAGACACCAAATAAGTCATAGATAACTTTTCCCCCTTCTATTCCTTT CTAATTATAATGTGTCTATGACTATGTGCATGAATCATTTCCTGAGAAAAAATAATGTTTTGGTAAAAGGGTTGCATATT CATGAATGCATGGATTACTTGTCTGTTGCAGATGGGCCCAAATAGCCAAGCATCTCCCTGGAAGAACAGATAATGAGGTC AAGAATTTCTGGAACTCTTGCATTAAAAAGAAGCTCATCTCACAAGGGTTAGACCCACAAACCCACAATCTCCTCGCTTC TCATAAGAGAAGCTCAAGAAATATCATCTCTCATAATAACAATCAAAATTCCAATTCCATTTTCATGTTGAGTTCACAGA ATATACCAAATGCTGATCCCTTGGGAATTAGTCAATATTTTTCATCACTACCTAAAGCTCCACCAAACATTGTTCAAACT CCCTCTGCCATTGCCTCCTCTGAATACCAAACACCCAACAATATTCTTTCAAACTACAAAACATTAGATTTTGCTAATGA GCTATTATTAACAGAGAATTGTTTTCCTTCCTGCCCAAATGTTTGGGTTTCAAGATTTGATGATGCTGAGGATTTTGGAG TTCAAACAACACTGGAAGAAGGGACACGAGTGCAGGTGCAGCAAGAGAAGGAAAAGAGTTGTGTTGAGAAGGGAATTGAT GTCAGGGAAGATAATTATAAGGACAGCCTTGAAATGAGTTCTTTTGAGAGTTGTAACTTTGATTTTGGGTTGTTGGAGAG TGTGCTTGCGTCTGAGTTTATCTCTGATCACGATGTCAACTATATGGATGAATTTGCATGGAACTTTTAGACCATGCTAG CTCTTCAACTATCCATAGTTCATGAATTTAAGTTTCCTACATATCACTAAGATGTGCATTCTAGAACTATCTTTGATCTT TCAGAAGTTATGGATAACCTTTCGTAACTTTAGTTGAAAGAATAAAATG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0132300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGCACCGTTGCTGCAGCAAGCAGAAGATCAAAAGAGGATTGTGGTCTCCTGAAGAAGATGAAAAGCTTCTAAAATA TATCACCATTCATGGCCATAAAAGTTGGAGTTCTGTTCCAAAGTTAGCAGGCTTGCAGAGATGTGGAAAGAGTTGCAGAT TGAGATGGATTAATTATCTGAGGCCTGATCTCAAGAGGGGCACCTTCACTGCAGAAGAAGAGCAGATTATAATTGACATT CATAGAATTCTGGGAAACAGATGGGCCCAAATAGCCAAGCATCTCCCTGGAAGAACAGATAATGAGGTCAAGAATTTCTG GAACTCTTGCATTAAAAAGAAGCTCATCTCACAAGGGTTAGACCCACAAACCCACAATCTCCTCGCTTCTCATAAGAGAA GCTCAAGAAATATCATCTCTCATAATAACAATCAAAATTCCAATTCCATTTTCATGTTGAGTTCACAGAATATACCAAAT GCTGATCCCTTGGGAATTAGTCAATATTTTTCATCACTACCTAAAGCTCCACCAAACATTGTTCAAACTCCCTCTGCCAT TGCCTCCTCTGAATACCAAACACCCAACAATATTCTTTCAAACTACAAAACATTAGATTTTGCTAATGAGCTATTATTAA CAGAGAATTGTTTTCCTTCCTGCCCAAATGTTTGGGTTTCAAGATTTGATGATGCTGAGGATTTTGGAGTTCAAACAACA CTGGAAGAAGGGACACGAGTGCAGGTGCAGCAAGAGAAGGAAAAGAGTTGTGTTGAGAAGGGAATTGATGTCAGGGAAGA TAATTATAAGGACAGCCTTGAAATGAGTTCTTTTGAGAGTTGTAACTTTGATTTTGGGTTGTTGGAGAGTGTGCTTGCGT CTGAGTTTATCTCTGATCACGATGTCAACTATATGGATGAATTTGCATGGAACTTTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0132300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGHRCCSKQKIKRGLWSPEEDEKLLKYITIHGHKSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGTFTAEEEQIIIDI HRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLASHKRSSRNIISHNNNQNSNSIFMLSSQNIPN ADPLGISQYFSSLPKAPPNIVQTPSAIASSEYQTPNNILSNYKTLDFANELLLTENCFPSCPNVWVSRFDDAEDFGVQTT LEEGTRVQVQQEKEKSCVEKGIDVREDNYKDSLEMSSFESCNFDFGLLESVLASEFISDHDVNYMDEFAWNF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF1112
1 158 158 9.7E-88 –
PANTHER
PTHR10641
1 158 158 9.7E-88
IPR015495
ProSiteProfiles
PS51294
8 60 53 19.071
IPR017930
Gene3D
G3DSA:1.10.10.60
10 66 57 9.0E-19 –
SUPERFAMILY
SSF46689
10 107 98 1.17E-29
IPR009057
SMART
SM00717
12 62 51 3.1E-13
IPR001005
Pfam
PF00249
13 60 48 2.9E-15
IPR001005
CDD
cd00167
16 60 45 2.79087E-11
IPR001005
ProSiteProfiles
PS51294
61 115 55 26.372
IPR017930
SMART
SM00717
65 113 49 1.9E-16
IPR001005
Pfam
PF00249
66 109 44 3.2E-15
IPR001005
Gene3D
G3DSA:1.10.10.60
67 147 81 2.3E-19 –
CDD
cd00167
68 108 41 4.94402E-12
IPR001005

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0132300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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