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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0133100 |
| Transcript ID | LotjaGi3g1v0133100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc transporter protein; TAIR: AT3G12750.1 zinc transporter 1 precursor; Swiss-Prot: sp|O81123|ZIP1_ARATH Zinc transporter 1; TrEMBL-Plants: tr|A0A1J7HFT8|A0A1J7HFT8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0133100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:16833016..16835712) extracted from Lotus japonicus Gifu genome v1.2.
CATTATATCATTTATATTTTTTTTTGTCTTTCTACAGATATTTTTCCTAATTGATATCCCCAAATGATATTTACCAAGCA TTTTCCAAATTGAGAGGAGTTTGTATCCTTTTGCTACATTCGATTTGGTGCAATAAGCTGTTAAAGATGCTCACATTTTG AGCCACTGAGAGTGGCTTTTTATTTTCTCTGCTTTTGTCTTTGAACATAGTCAATGCATGAACTTTGCCCTCTTTTAAAT AACAATCCTAGAACCTCTTCTCATATACTCACAGCCCCAACCAACGGTTCCTAGTTTTATACCATCCTTTCTCTCCATCA TTCTATTGGCCACCTCAAATTTCCAACACAATCATGAACTTTCAAGCTTCTTCTTTCACTACCTTAAAGCTGTTCTGTTT TCTTTCTATACTCTTCTCAACTCTGGCCTCAGGTGATGAAATTACATGTGAAACAGTAGGAGCCACACAGAGTAATAATA ACAGTGAAGCTTTCCATTACAAAATTGGGTCAATTGCTTCTGTGCTAGTTGCTGGTGCTCTTGGTGTGATTCTCCCATTG TTGGGAAACAAAATCCCACCTCTGAATCCCAAAAATGACATCTTTTTCATGGTGAAAGCGTTTGCAGCAGGGGTGATTTT AGCAACTGGGTTCATCCACATACTACCAGATGCATTTGAAAGCTTGACATCACCATGCCTTAAGGACAATCCATGGGGGA AGTTTCCTTTCGCTGGTTTTGTTGCCATGTTATCCTCTATTGGAACCTTGATGGTGGATTCTTTTGCAACTGGGTATTAC CAAAGGCAACATTTTAATCTTTCAAAGCCAGTTCCTGCAGATGAAGAATTGGGAGATAAACATGCTGGTCACATGCATGT TCATACACATGCCACACATGGTCATGCTCATGGATCCACTAACCCTTCTGGGGATGCTGTAACATCTGAATTAATTCGGC AACGCATCATATCTCGAGTAAGATCAATGACCACATGTTTGTATCGGTTTCTATTTTCTGAGAATCAATTCTGAAACTCA GAAGCTAGTCACATGAACTTCTCATAATTGATTCTGAGTTTAGAATCAATTAGACACACTGGTGCTGTTTGTTTAGATTT GAATTGTGTGCCTTATCAATGTTCGGTTTGGGTTTGTGTCTGTGTCAGGTGCTTGAGCTAGGAATAGTGGTCCATTCAGT GATTATTGGCGTATCTTTGGGTACTGCACAAAGCATTGATACCATAAAGCCTCTTCTAGTGGCCTTGTCTTTCCATCAAT TTTTTGAGGGGATGGGACTTGGAGGCTGCATATCTCAGGTATTGTAATCTGCAAATCTCATGCTTATTCGGCAAGATTCA ATTTTCAGATTCTTTTAATCTAAACAATTTGTGGTCTTCATCGATAATATGACATCAAATCATATATGGTTTTAAGAAAA ATAGTGAAAAAAGGAATTTTTTTTTTTTCAGATTTTTCAAGTCTTTTCTTATGTAAACCATCTGGTATCCGGTCACCTTT CAGATGTCGACTATTTCAGATTTGAGAATTAATTATAGTTAAGCCTCTTTATTTGTTCCCTCAAGGGGATTACGGGGGAA ACCAAGAGTTTTTCTCATGCACTCAGTCTTCTGTGTTGTCAACCGAGCTACCTCTTGTGTTCTTTTTTTGAAGTCTAAAC ATTTGTGATCCTCTTATTATGTCATCAAACCATATATGGTTTTAGGTTGATGGTGAAAATAGGAAGTTGAATTCATTTTC TATTAAGGGAAAAGTTTCAAGTAGAAGAAAAAACAGAATTGCGTGTGGATGTATTCTGAGGAGTTTGGAAAGTAGGTTAG TTGTTTGCAAAATGTTGCCATGATGACAACATCCTCATATTAACTGCAAATGCAAATGAGCTAAAGTTTAGCACATGTGA AGAGAAAGACCAATCAGTCACTTTGATCTAAAGTTTTGGCACACTACATGACACAAATGAGTTATAAAGTTGGATAATAG ATTAAATTAAAACTTTGTTAATGTGCTTTATGTGCTCATATTACTAAATTGTGAGCAGGCAAAGTTCGAATCAAGGGCTA CTGCAATTATGGCAACTTTTTTCTCCTTAACAACACCAATTGGTATAGCAATTGGAATGGGAGTTTCAAGTGTGTACAAA GAGAATAGCCCAACTGCTTTAATTGTTGAAGGGGTTTTCAACTCTTCTTCAGCTGGAATTTTGATTTACATGGCATTAGT GGACCTTCTAGCAGCAGATTTTATGAATCCCAAGTTGCAGAACAATTTGAAGCTTCATGTAGGAGCAAATATCTCTCTTC TTCTAGGTGCAGCTTCTATGTCTGTATTGGCCAAATGGGCCTAAAGTTTTAGAGTTTCAGATTCTATTTAGGAGCTTTTG CTTTATTTTCTTCTTCTCCATCAGTATTTCGTTGTCTTTATATTCTTTTCGTAACACTATGCTAATGCTACATGACCATA ATATCCGCCTAATAGGGGTCGTCCAAAAAAATATCTACAATAATTGATGATGGGGTACAGAATCGTAATATGTCCATTAA ATATTCAAAAATCGTTTTTAATAAAATTAAGAGGAGTGCGGATGACACTCTTTTTCTTTTTTGGTACATCGGAAAGATAA ATTGCACCCGCCAGGAATTGATTACTGGACCTCCCCTACCCAACTCATATGTCCTCA
CDS sequence (LotjaGi3g1v0133100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTTTCAAGCTTCTTCTTTCACTACCTTAAAGCTGTTCTGTTTTCTTTCTATACTCTTCTCAACTCTGGCCTCAGG TGATGAAATTACATGTGAAACAGTAGGAGCCACACAGAGTAATAATAACAGTGAAGCTTTCCATTACAAAATTGGGTCAA TTGCTTCTGTGCTAGTTGCTGGTGCTCTTGGTGTGATTCTCCCATTGTTGGGAAACAAAATCCCACCTCTGAATCCCAAA AATGACATCTTTTTCATGGTGAAAGCGTTTGCAGCAGGGGTGATTTTAGCAACTGGGTTCATCCACATACTACCAGATGC ATTTGAAAGCTTGACATCACCATGCCTTAAGGACAATCCATGGGGGAAGTTTCCTTTCGCTGGTTTTGTTGCCATGTTAT CCTCTATTGGAACCTTGATGGTGGATTCTTTTGCAACTGGGTATTACCAAAGGCAACATTTTAATCTTTCAAAGCCAGTT CCTGCAGATGAAGAATTGGGAGATAAACATGCTGGTCACATGCATGTTCATACACATGCCACACATGGTCATGCTCATGG ATCCACTAACCCTTCTGGGGATGCTGTAACATCTGAATTAATTCGGCAACGCATCATATCTCGAGTGCTTGAGCTAGGAA TAGTGGTCCATTCAGTGATTATTGGCGTATCTTTGGGTACTGCACAAAGCATTGATACCATAAAGCCTCTTCTAGTGGCC TTGTCTTTCCATCAATTTTTTGAGGGGATGGGACTTGGAGGCTGCATATCTCAGGCAAAGTTCGAATCAAGGGCTACTGC AATTATGGCAACTTTTTTCTCCTTAACAACACCAATTGGTATAGCAATTGGAATGGGAGTTTCAAGTGTGTACAAAGAGA ATAGCCCAACTGCTTTAATTGTTGAAGGGGTTTTCAACTCTTCTTCAGCTGGAATTTTGATTTACATGGCATTAGTGGAC CTTCTAGCAGCAGATTTTATGAATCCCAAGTTGCAGAACAATTTGAAGCTTCATGTAGGAGCAAATATCTCTCTTCTTCT AGGTGCAGCTTCTATGTCTGTATTGGCCAAATGGGCCTAA
Protein sequence (LotjaGi3g1v0133100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNFQASSFTTLKLFCFLSILFSTLASGDEITCETVGATQSNNNSEAFHYKIGSIASVLVAGALGVILPLLGNKIPPLNPK NDIFFMVKAFAAGVILATGFIHILPDAFESLTSPCLKDNPWGKFPFAGFVAMLSSIGTLMVDSFATGYYQRQHFNLSKPV PADEELGDKHAGHMHVHTHATHGHAHGSTNPSGDAVTSELIRQRIISRVLELGIVVHSVIIGVSLGTAQSIDTIKPLLVA LSFHQFFEGMGLGGCISQAKFESRATAIMATFFSLTTPIGIAIGMGVSSVYKENSPTALIVEGVFNSSSAGILIYMALVD LLAADFMNPKLQNNLKLHVGANISLLLGAASMSVLAKWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 12 | 12 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| Phobius | 13 | 21 | 9 | - | – | |
| Phobius | 22 | 27 | 6 | - | – | |
| PANTHER | 26 | 359 | 334 | 1.2E-186 | – | |
| PANTHER | 26 | 359 | 334 | 1.2E-186 | – | |
| Phobius | 28 | 50 | 23 | - | – | |
| TIGRFAM | 32 | 359 | 328 | 1.6E-139 | ||
| Pfam | 48 | 356 | 309 | 1.3E-74 | ||
| Phobius | 51 | 71 | 21 | - | – | |
| TMHMM | 51 | 70 | 20 | - | – | |
| Phobius | 72 | 82 | 11 | - | – | |
| Phobius | 83 | 104 | 22 | - | – | |
| TMHMM | 83 | 105 | 23 | - | – | |
| Phobius | 105 | 123 | 19 | - | – | |
| Phobius | 124 | 149 | 26 | - | – | |
| TMHMM | 125 | 147 | 23 | - | – | |
| Phobius | 150 | 208 | 59 | - | – | |
| TMHMM | 209 | 231 | 23 | - | – | |
| Phobius | 209 | 231 | 23 | - | – | |
| Phobius | 232 | 236 | 5 | - | – | |
| Phobius | 237 | 256 | 20 | - | – | |
| Phobius | 257 | 267 | 11 | - | – | |
| Phobius | 268 | 291 | 24 | - | – | |
| TMHMM | 268 | 290 | 23 | - | – | |
| Phobius | 292 | 302 | 11 | - | – | |
| TMHMM | 297 | 319 | 23 | - | – | |
| Phobius | 303 | 323 | 21 | - | – | |
| Phobius | 324 | 334 | 11 | - | – | |
| Phobius | 335 | 356 | 22 | - | – | |
| TMHMM | 339 | 356 | 18 | - | – | |
| Phobius | 357 | 359 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion transmembrane transporter activity | Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. | ||
| Biological process | Zinc ion transmembrane transport | A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi3g1v0133100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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