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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0134500 |
| Transcript ID | LotjaGi3g1v0134500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small ribosomal subunit biogenesis GTPase RsgA; TAIR: AT1G67440.2 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|B0JW21|RSGA_MICAN Small ribosomal subunit biogenesis GTPase RsgA; TrEMBL-Plants: tr|A0A0L9T563|A0A0L9T563_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0134500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:17110799..17114879) extracted from Lotus japonicus Gifu genome v1.2.
AGTAGATAAGCTCCAATAAAATCAACCGAGTTTTAAACACAGCTGAGGGAACTTTCTACCAGTCCCTACTTCACGGTGTT ACTTCACACTTCATCTTTAAGAATGGAGTGAGTGAGTGTCCCCTCCCTCAAAATCCATTTCAATTTAACATGTCTCTAAC ATCACTCTCCGCCATCCGCCACCGCACGGTGGCGTCCACCACCGCCACTCTCCTCATCCGCCGCTTCCGCTCCCTCCCCA TCTCCGCCGCAGCCCGACAACCCAAACAAGACGCCCCAAGCAAAAACCTCCTCAAAGCAAAAAAACACTCCCTGAAAGAA TTCTCCACTCTCGGCCCCGTCCTCTCACACGACAACACCCCTCCCCTCTCCGAATCCCAGGCCGTCGGCGTCGTCGCCGC CTCTCAGGCCAACTTCATGCGCGTCGTGCTCCCTTCCGGCGGAGTTGAGCTTCTCTGCGTGGTGAGGGCGCTTCTGAAGA AGATCAAGCGTAGAGTCATGGTTGGTGACAAGGTGCTTGTTGGTTCCATCGATTGGGTGGATCGTAGGGGCATGATTGAG AACGTTTTTCAGCGGAATTCGGAGATTCTTGACCCTCCTGTTGCTAATGTTGACCATTTGCTTGTGCTTTTCTCGCTTCA GAACCCTAAGCCTGAGCCATTTACGCTCACAAGGTTTTTGGTTGAAGCTGAGTCTACTGGGATTCCTCTTACTCTTGCAC TCAACAAGATTGAGCTTGTGGATAATGAGGTTCTTGTTTGCTATTCTGGTTATTGTGATTTTGTTTAGTTTGGCTAGCTT GAATTGAATTCATTTTTAGCTTATACCAGTTTTTGATTCCTATTTTAGAAAAAATTGTCTAAAATAAGCTAGTTTATAGG GAAGTTAGATAAGCTAGTTTATGCCATGCTGAAATCAATTTCAATTTGTGCAAATTTACAAGACTGGTGCCAAGTCTACA TAAGCTTCCCTTAGCTACTTTAGTTAGTTAGTCAATATGGGATATCATGTGATTAGAGAGAGTGAAGAGAGACTATAATT AAGACTTAAGAGGGTGAGGAGAATAGTGAGGGTATCAAATTTGTAATTGGGAAATTTGGGAGGCTCCTAGTCTCTCGAAT ACCAAGGAACCAGTGAGTTTTCTTACCATACTTTCAGTAGAATTCAGTGTTCCTTCGCTTTCATTGCTGGCACCTTTCAG GTTCTTAACTAGACTAGAGACGAAGTCATTATAAGTTTATAGTTATTAATGGGGAAGTAAGATGACAGAGCTTGTAGTTT TGGGAGAAGCTATTATTTAAAAGACTCACAGTCATTGCAAGACTGGGGCCAACTTCTCTTTACCTATAAGGGCTTGCTCA TAAATTCATCCAAACTGGTTCTTATAGTCATTGCGAGATCATTTCAACTTTTGTTTTTGTACAAGTGTTTGTTGGGAAAT TTATCCAGACTAGCTGTGTGTCTGTGTTCTTAGTTATTATAGCCTATTGTGTTTGGTAAAAAGAATGGTAGAGCTGATCT ATATTGGAAGCTTTTGTTATGGAAAGATGAATGTGGATTTTGAAGACAGTGTTTGACCTTTTGCCAGAAAGCTTCACTGA ATGTTTGGTTGTTGATTTTGGCTGATGAAATTATTTTAGTTTTTATTTGTTATGATGCAAACTTGGAATCCAACTGTGAT GATATTCTGATGTGAAGAAGTTACTTTGACCTCTGTATAGACCGTGGCTTCCTGGAAGGCTAGGGTACGGGATTGGGGCT ACGATCCAATTTTGTGCAGTGTTGAATCTGGACATAACCTTGATCTTCTTGCGTTCAAATTGAGAGATCAAACAACAGTG ATTGTGGGTCCTAGTGGAGTTGGGAAGTCTAGCTTGATCAATGCCCTTAGAACAAATCCCCGAGTTTGTGAAACTGCAGA AGGGGAAAATTGGTTTGAACCTGTAGGTTTTGGTTTCTTTTTTCTATTGATATCCTCTACTATGTGTATGTGAGTTTGAT ATTTATATCATTTGTGTACGTGTATTGTTTCTCAGATTCTAGGTAGCAAGTGGTTTGAGGATCAGCGAGTTGCGGAAGTT TCAACAAGAAGCGGCAGAGGGAAGCATACTACTCGCCATGTCAGTCTGCTTCCATTATCTGGAGGGGGATATCTTGCTGA TACTCCTGGATTTAACCAGCCTAGCTTGATGAAAGTGACAAAGCAATCTCTTGCAGAAACTTTTCCTGAAGTTAGTGTAG CTTATCTGACTAAATCTAGTGTTAACACAGTTTTTCCTGTTTAGATTGATGTTGAACATTTTCCCTTATTCAGATCAGGA AAATGCTTAGTGCCAATGAGTCTGCAAAATGCTCCTTTAACAATTGCTTGCATCTGGGTGAACCTGGCTGCATTGTGAAG GGGGATTGGGAAAGATATTCATTCTATTTTCAACTTCTGGATGAAATTAGAATCAGGGAGGAGTTTCAGTTGAGGACATT TGGAACTAAAAGAGAAAGTGATGTAAGGTATGATGTGTGATTTATCTTTGTGATTGAAAACCAACACTTCACTCAGTAAA TAGACAAGTATGATTCAATTCTTGGATTTTGATTTATTATTTTCTTTCATAAAATGTAACATTCTGAGGCAGTTTTTGCA ACCATGGGATGAGGGATGTTGTTAAAAGCTGATTCTTACATTTGTAGATGTTAATTTATAGATTTAAGCATGGGTTTCGT AGATATACCCGTTTGCATACAGAGTTATTGGAGCTTATCTACTATAAAAAAACACTAAATTAATGCGCCTCGTTGTTAAT GATTGTGTGGGAAAAGATAACTTTGTAAAAGTATCTTCCGGAATGGAAGCTGATCATATTCATAAGTAGTCCACAAATCA ACTGCAAGATGTGCAGTTAAAACCCTACACTACCTCGTCATTGTATTATCTGGCTATTAATGCGTTTATTTTTATGCAGG TTGAAAATGGGAGATATGGGTGTTCAGCAAGCAGAACCTAGGTTGGAACCTAAGAAGCATAGGAGACAATCTCGGAAGAG GATCAACCAGTCATTTTTAGATGAAGTGGATGATGACGACGATTTGATTGACGAGGAGAATGATCCCGTTTTAAGGGCAT TGAGGAATGAAAACCCTTAAAAATACGTTAATCCCCCGAGCAAGCATAGCTTGTAAATAGTCTCTTTCTGGGTATCCACT TGTATGTTCAGTTCAACTTAGTTCCCATTACCCTTTTTTTGTGTGTTTGACCTTCTCTCACATGTAGGCTCAATCGTGTA CAGTGTGCAGATGACAGTAATGGACATAGCAGTCTTAATGGTGAATTACATGAAGGGTGTGATGCATGCTGATTGCCTGT AATTGAATTACAATCAGCATTCACTCTTTTGGGACACCGATTGTTGAGGGACTTGGTGAGAGTAAGTGTTGAACACACTT GTTCAGACGCAGAGAAAACACTGGATTTCCAACTTATGTCAATGTTGTTAATCCACTTGAGATGGTTTTAGTTCATCCGC TTGAGATGGTTATATTGCCATGACCAATTGAATGTACAACAAAAGTGACCCCTAACTTCAAACTACTGGACGTCCATAGA TGTCTAATCTCCATAAATGTTAATCCTACAAAAGGGCAAACACCAAAACATGAAGGTATTAAGAGCAGTGACGAATCTCC ATGAACTGGAACTTCATGTATAGAAGTTATAAATTGTTGATTTGTTCTCCTTGCCATGTGAAAGTTCAATGTTATATCAT GAATATTTTTTTGAATACAAAAGCTATATATTTAAAAACATAACAAACGGCATGGATGAGTTCTAATACACCATTCATAT AAATGAACTTAGTACTAAATAAGGTCACTATTATATCTATTTCATAAATATATTTTAGCAGTCATCGATTTATCTGGTTT CCTAGAAGACTTGCGCTTAACATCTCACTAATTTAATTGGATATAGCCTTATATTATAGCAAACTCACTTGATCAAAGTG TCCAAAATACAAGATTTAGAAGTCTATGTGGGTAGCACTAGTTGATCATCAGCTCAGTTCAAAGGCCAGTTGAATCTTCC C
CDS sequence (LotjaGi3g1v0134500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCTAACATCACTCTCCGCCATCCGCCACCGCACGGTGGCGTCCACCACCGCCACTCTCCTCATCCGCCGCTTCCG CTCCCTCCCCATCTCCGCCGCAGCCCGACAACCCAAACAAGACGCCCCAAGCAAAAACCTCCTCAAAGCAAAAAAACACT CCCTGAAAGAATTCTCCACTCTCGGCCCCGTCCTCTCACACGACAACACCCCTCCCCTCTCCGAATCCCAGGCCGTCGGC GTCGTCGCCGCCTCTCAGGCCAACTTCATGCGCGTCGTGCTCCCTTCCGGCGGAGTTGAGCTTCTCTGCGTGGTGAGGGC GCTTCTGAAGAAGATCAAGCGTAGAGTCATGGTTGGTGACAAGGTGCTTGTTGGTTCCATCGATTGGGTGGATCGTAGGG GCATGATTGAGAACGTTTTTCAGCGGAATTCGGAGATTCTTGACCCTCCTGTTGCTAATGTTGACCATTTGCTTGTGCTT TTCTCGCTTCAGAACCCTAAGCCTGAGCCATTTACGCTCACAAGGTTTTTGGTTGAAGCTGAGTCTACTGGGATTCCTCT TACTCTTGCACTCAACAAGATTGAGCTTGTGGATAATGAGACCGTGGCTTCCTGGAAGGCTAGGGTACGGGATTGGGGCT ACGATCCAATTTTGTGCAGTGTTGAATCTGGACATAACCTTGATCTTCTTGCGTTCAAATTGAGAGATCAAACAACAGTG ATTGTGGGTCCTAGTGGAGTTGGGAAGTCTAGCTTGATCAATGCCCTTAGAACAAATCCCCGAGTTTGTGAAACTGCAGA AGGGGAAAATTGGTTTGAACCTATTCTAGGTAGCAAGTGGTTTGAGGATCAGCGAGTTGCGGAAGTTTCAACAAGAAGCG GCAGAGGGAAGCATACTACTCGCCATGTCAGTCTGCTTCCATTATCTGGAGGGGGATATCTTGCTGATACTCCTGGATTT AACCAGCCTAGCTTGATGAAAGTGACAAAGCAATCTCTTGCAGAAACTTTTCCTGAAATCAGGAAAATGCTTAGTGCCAA TGAGTCTGCAAAATGCTCCTTTAACAATTGCTTGCATCTGGGTGAACCTGGCTGCATTGTGAAGGGGGATTGGGAAAGAT ATTCATTCTATTTTCAACTTCTGGATGAAATTAGAATCAGGGAGGAGTTTCAGTTGAGGACATTTGGAACTAAAAGAGAA AGTGATGTAAGGTTGAAAATGGGAGATATGGGTGTTCAGCAAGCAGAACCTAGGTTGGAACCTAAGAAGCATAGGAGACA ATCTCGGAAGAGGATCAACCAGTCATTTTTAGATGAAGTGGATGATGACGACGATTTGATTGACGAGGAGAATGATCCCG TTTTAAGGGCATTGAGGAATGAAAACCCTTAA
Protein sequence (LotjaGi3g1v0134500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLTSLSAIRHRTVASTTATLLIRRFRSLPISAAARQPKQDAPSKNLLKAKKHSLKEFSTLGPVLSHDNTPPLSESQAVG VVAASQANFMRVVLPSGGVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFQRNSEILDPPVANVDHLLVL FSLQNPKPEPFTLTRFLVEAESTGIPLTLALNKIELVDNETVASWKARVRDWGYDPILCSVESGHNLDLLAFKLRDQTTV IVGPSGVGKSSLINALRTNPRVCETAEGENWFEPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF NQPSLMKVTKQSLAETFPEIRKMLSANESAKCSFNNCLHLGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFGTKRE SDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSFLDEVDDDDDLIDEENDPVLRALRNENP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 25 | 448 | 424 | 5.4E-224 | – | |
| PANTHER | 25 | 448 | 424 | 5.4E-224 | ||
| SUPERFAMILY | 78 | 142 | 65 | 2.68E-10 | ||
| Hamap | 78 | 388 | 311 | 29.7 | ||
| TIGRFAM | 116 | 258 | 143 | 2.6E-33 | ||
| Pfam | 139 | 325 | 187 | 7.6E-57 | ||
| Gene3D | 142 | 322 | 181 | 3.8E-45 | – | |
| ProSiteProfiles | 143 | 323 | 181 | 38.116 | ||
| SUPERFAMILY | 146 | 385 | 240 | 9.21E-46 | ||
| ProSiteProfiles | 152 | 321 | 170 | 38.826 | ||
| CDD | 152 | 382 | 231 | 8.93369E-83 | ||
| Gene3D | 326 | 390 | 65 | 2.0E-9 | – | |
| MobiDBLite | 409 | 434 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0134500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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