Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0136800 |
| Transcript ID | LotjaGi3g1v0136800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB family protein; TAIR: AT1G79180.1 myb domain protein 63; Swiss-Prot: sp|Q6R0A6|MYB63_ARATH Transcription factor MYB63; TrEMBL-Plants: tr|I3RSY1|I3RSY1_LOTJA R2R3MYB transcription factor; Found in the gene: LotjaGi3g1v0136800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:17482237..17485330) extracted from Lotus japonicus Gifu genome v1.2.
AAATAGTCAAAGAGGAAACTCTTTATTACCAATAAATGCATGATAAATATTATAATAAAATACTTCTAGATTTCACTCTA TTTATTGCATTGCACTTCAGTAACCTGAGGCATGACTCTTGTGGGTTCAATGCAGAGTATCCCCTCACTGCACCAGCTAG TATATATAGGCTGAGGGGGAACACCTGAGTGAAGCATATTTGAACTGATCCAAACACCATGAAAAACTAAGACTTAAGGA GTTGTAATAAGAGATCATCATCATCACTCATGGGGAAAGGAAGAGCACCATGCTGTGACAAGACTCAAGTGAAGAGAGGT CCTTGGAGCCCTGAAGAGGATCTTAAGCTCATAGCGTTCATCCAGAAACATGGCCATGAGAATTGGCGTTCTCTTCCCAA ACAAGCTGGTATATATTTTGATCCCTCCCTCTCTCTTTCGGTGTGTGTTTGTGCTCACTGGGACAAAGTGTGTCAGCATG TGTTATTTTTCTGTTTTCATATTTTTTCAAGATCGGAATTAGGGTGTTTTGGTTGTGAACTGAATTTTGTATGAGAGTCT TTCTCTGGGAATGACATTATTTTGTTAAGTTTCAACCAGTTTTTGTGTTTGATGTCATTCATTTATGTATCTGTGAAAAT TTAATTTTTACAATGTCTCTTTGAAATTTGAATTTGCATTTACATTCATGGCTATGATCCGGTGGTGTCGCGTTTGCGTC ATGATCCTACAATTGTGGCTGCAATTGCGGTCGCTGCCATAATTGCAATTGCTGACAAGTTATGTTTGCATTGTTGCTTA AACCTGCTGTTTGTGATGAATCACATTTCAAGATTCTGCATTTGCTCTATTGCTCTGTTCCTCCATTGCTCTATTGCTCT GTTTTTAATTGGTATGACATAATTTTATTGTTGAGATAGGCGAAATAAGGTGACAGAAAATCTCAATCCCTTGTGGGGTG GTACACTTGTTTTCCGTTTAAATTAAAAATTTATTCATAATAATAGAGAGAATAAAAACAGAATAGTTTGGCAGGAGTAG GAGACATTTTGCTTGGCTCTGGTTAGTAAGAAAAATTTGAAACGTTCATTTGTCACCAAACTATCATTGTGGTCCCTCAT TCAACCAGTAATTGTGACATTTTAAGTCTTGGTTAAAGAAACTCATACATTTTAAATGTCCAATTTCTCAAAATGGTTAT CCACCTACCTTTAATAGGCCCCAGCCAGGTTGAGTGTCATTCCACATATGAAAAATTACCATTATGATCATAAACATACA TAAAGACTCTGCATAAGCATGTCCCTTTACTATGTGCCAATATGCTACTTGAAAACATTTATTTTCAATTTTCCTTAAAA TGAAGGGGATTACGTTTTAATTTGAAGTTTCCTCCTGTAAATTATAATTAACTTCTTGGGTTCCCCTAAGAAGTAGCTGA ATGACTATTTTAGCTATTTCATTACAGGTTTATTATGATTCACTTTGTACATTTGCTTCAATTATTTTCTGAATTAGGAG GGATGAGTAGTGACTAGTGAATGGATGATATTTTTAAGCAAAAGACAGAAAAAAAAGTGGGCTAGAGGATTGTAGTCATA TAACTATTAATTCATAATAAAATATGAGTACAATCATTTTTAATGTTTAGTAGCTGTTTTTTTTTTCTTTCTGAAATCTA ATAGCTGTTTTGACTATAGAAGAAAATGGTTTAAAAGAAGAGTTTGCAATATTCATGCCTTCTTAACCAGGATGTTAGAA AATTGAAGTTGATAATTTTTATCAAACTGAGCCTCACTCATACTTCATATTTGTTATGCTAATTTAGGGCTTCAGAGATG TGGGAAAAGTTGTCGTTTGAGATGGATCAATTATCTGAGGCCAGATGTGAAGAGAGGAAATTTTACACCAGAGGAACAAG AAACCATAATAAGGCTACATAAATCCTTGGGAAACAAGTAAGTGTTTGTGTCTCAAATCAAAATATGCATTGGTTTTGTT TAACATATCTAATTAATTATGGTTTAAAAAATTTGGTTTCAGGTGGTCAAAGATTGCATCTCTTTTGCCTGGTAGGACTG ACAATGAGATCAAGAACGTGTGGAACACCCACTTAAAGAAAAAATTGGATCCCAAAAATTCAGAGTCAAGTGGAGATGAG TCCAAGCTGCAATCATCAGTAACATCCTCTGCATCTTCTTCATCAGAATCATTTTTCTCAAATGAGGGATCAAATCTTGC AAATACTCCTCCTGTTAATGAGTTTATGGAACAAGCTTCTGAAGTGACAATGACAGACAAAATTGAGCCAGATTCAGAAA AGCAAGTATCCAATGAAGTTAATGGCATCAATGAGAATCTCAAGGAGTCATCAAATTCATTATCTTCTTTAGAGTCAAGT ATCTTGAACTCAAGCCAGGACATTATTTCCTACAAGCCAGAACAACAACTAGCTTCTCCATTAATCTATCCAGGACCTTA TGATGTTGACAATACATTACAAGAGGTGGATAAACCAAACCATGATCTGGTTGAAATTCCATGGGAATCAGATTATGATA TTTGGAGTTTGTTAGATAGCATTGAATCTTTCCCACCAAATGAAGTACCATTGGGGGCCAGTCAGAATCATGATCTTGGA GTAGAGAGTGTTCAAGTTACTGAAGCCATGAAGTGGTCCCATGAATTTGAAGGCAAGGCTGGAGTAGTTGGTGAAACAAA TGAGTCAAACAAGGATCAGTTCCTACCAAAGAATTATGCAGTTGAGCCACAAATAGACCCTCCTCAGACATTTCACTTCA ATGACATGACAAGCCCAGCAGAATCTGAATTAGACTTTGATTTTATTCAATTATGGCCCTCTTCCCCTTAAAATACTAGT TTTTAAGTTTAATACATACAAAAAGTACTTCCATCTAAGAATCATGAATCTGATTATACTGACAATGGTAAATTAAGCCA TATAGATTAGGTGTCTCTAATTGTATGATGGGTTGGTTTAATTCATGTATGATTCTCAAAATCAAGTGAGAATAGCTTGA AGCACATATATGCAAGTAATTAATGTTTATTGAATAAATTGTTGGACTTGGTAA
CDS sequence (LotjaGi3g1v0136800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAAGGAAGAGCACCATGCTGTGACAAGACTCAAGTGAAGAGAGGTCCTTGGAGCCCTGAAGAGGATCTTAAGCT CATAGCGTTCATCCAGAAACATGGCCATGAGAATTGGCGTTCTCTTCCCAAACAAGCTGGGCTTCAGAGATGTGGGAAAA GTTGTCGTTTGAGATGGATCAATTATCTGAGGCCAGATGTGAAGAGAGGAAATTTTACACCAGAGGAACAAGAAACCATA ATAAGGCTACATAAATCCTTGGGAAACAAGTGGTCAAAGATTGCATCTCTTTTGCCTGGTAGGACTGACAATGAGATCAA GAACGTGTGGAACACCCACTTAAAGAAAAAATTGGATCCCAAAAATTCAGAGTCAAGTGGAGATGAGTCCAAGCTGCAAT CATCAGTAACATCCTCTGCATCTTCTTCATCAGAATCATTTTTCTCAAATGAGGGATCAAATCTTGCAAATACTCCTCCT GTTAATGAGTTTATGGAACAAGCTTCTGAAGTGACAATGACAGACAAAATTGAGCCAGATTCAGAAAAGCAAGTATCCAA TGAAGTTAATGGCATCAATGAGAATCTCAAGGAGTCATCAAATTCATTATCTTCTTTAGAGTCAAGTATCTTGAACTCAA GCCAGGACATTATTTCCTACAAGCCAGAACAACAACTAGCTTCTCCATTAATCTATCCAGGACCTTATGATGTTGACAAT ACATTACAAGAGGTGGATAAACCAAACCATGATCTGGTTGAAATTCCATGGGAATCAGATTATGATATTTGGAGTTTGTT AGATAGCATTGAATCTTTCCCACCAAATGAAGTACCATTGGGGGCCAGTCAGAATCATGATCTTGGAGTAGAGAGTGTTC AAGTTACTGAAGCCATGAAGTGGTCCCATGAATTTGAAGGCAAGGCTGGAGTAGTTGGTGAAACAAATGAGTCAAACAAG GATCAGTTCCTACCAAAGAATTATGCAGTTGAGCCACAAATAGACCCTCCTCAGACATTTCACTTCAATGACATGACAAG CCCAGCAGAATCTGAATTAGACTTTGATTTTATTCAATTATGGCCCTCTTCCCCTTAA
Protein sequence (LotjaGi3g1v0136800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKGRAPCCDKTQVKRGPWSPEEDLKLIAFIQKHGHENWRSLPKQAGLQRCGKSCRLRWINYLRPDVKRGNFTPEEQETI IRLHKSLGNKWSKIASLLPGRTDNEIKNVWNTHLKKKLDPKNSESSGDESKLQSSVTSSASSSSESFFSNEGSNLANTPP VNEFMEQASEVTMTDKIEPDSEKQVSNEVNGINENLKESSNSLSSLESSILNSSQDIISYKPEQQLASPLIYPGPYDVDN TLQEVDKPNHDLVEIPWESDYDIWSLLDSIESFPPNEVPLGASQNHDLGVESVQVTEAMKWSHEFEGKAGVVGETNESNK DQFLPKNYAVEPQIDPPQTFHFNDMTSPAESELDFDFIQLWPSSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 11 | 63 | 53 | 16.298 | ||
| Gene3D | 13 | 69 | 57 | 2.8E-19 | – | |
| PANTHER | 14 | 177 | 164 | 3.0E-81 | – | |
| PANTHER | 14 | 177 | 164 | 3.0E-81 | ||
| SUPERFAMILY | 14 | 110 | 97 | 5.87E-31 | ||
| SMART | 15 | 65 | 51 | 1.3E-13 | ||
| Pfam | 16 | 63 | 48 | 4.0E-15 | ||
| CDD | 18 | 63 | 46 | 2.23427E-11 | ||
| ProSiteProfiles | 64 | 118 | 55 | 26.314 | ||
| SMART | 68 | 116 | 49 | 4.3E-15 | ||
| Pfam | 69 | 114 | 46 | 1.1E-14 | ||
| Gene3D | 70 | 142 | 73 | 1.5E-21 | – | |
| CDD | 71 | 114 | 44 | 3.40832E-11 | ||
| MobiDBLite | 117 | 160 | 44 | - | – | |
| MobiDBLite | 127 | 160 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0136800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…