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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0139500 |
| Transcript ID | LotjaGi3g1v0139500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SBP (S-ribonuclease-binding protein) family protein, putative; TAIR: AT3G12920.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|G7IH38|G7IH38_MEDTR SBP (S-ribonuclease-binding protein) family protein, putative; Found in the gene: LotjaGi3g1v0139500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:18442987..18446561) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAAGATCTCTCACACTAGAACCAACACACCATCTTTATTTATCCTTTTTATTTTTAAATAAATTTTCGGTCTAACGT TATTTTTTTAATTTAAAACCATTTAATTTAATAATGATGTGTGGTGGGCCCATGCAAACCTTGAACAAACACCACCCCAT ATAAGGATTGCCACCTCTATTTGCATGCCATTTTCTCCCCCCTTCTCTTTCACTCACTTCTTTTCTATTCTCATTTCCTC TCCTATTCTCTCTTATCTTTGCTCTCAAACCAAAACCAAAACCATCTTCAAATATCAAGAACCAAGCTTAAACCTATCAT TTCTATGGCTGTTGAAGCTCGTCATCTCAATCTTTTTCCTCCTCAACTCATTACCAACCGGTAAATTTTCCATTTTCTTT ATCTTTTACCTTAATAATCTCATGTTTTTTTCATTCTATGTCAAAATTTACTAATGTTTTGTTGGTGAATGAATATGCAG GGAAATGATGGTGAACCCAGTTGAGACAAACGCTAATAATCTCTACAACACCACCACCCAGATGTGCTATTCATCAGTTT TACCATTATCCGGCGGCGTCGGTGGCGCAACGCCGGAAAACATGCTCCTTCCGGCGGCGTATAATTCCATCATGGACAAC TCCTTTCCTCAGAAAAACTCAATGAAATCTGACAGTGGCCTCACCTACAATGTTCCCTTATCAACCAAAGCCTGCAACAC AAGAGAGAATTCAACTTCAATCAACAACTTTCCATTCCCATCTTACCCTTCTTCCCGAACCACCGCCACCGCCGCCGTGA ACAAAAGCTGCGCCTCCTCATCCTTCTCCTTCCTCGGTGAAGACATTTCCCTTCAGATCCACCAGCAACAAGTCGACATC GATAATCTCATTGCACAACGGGTAAGCAAAATTGCAAAAAATATTCACAGTTCAATCTTATCAAATTGGTTTCCATTTCC CAGTTTCTCATCTGTTTCTGTTGTATTGAATTCTTCAGATGGAGAAGGTGAGAATGGAGGTAGATGAAAAACGCAAGAGG CAAGCGAAGAGGCTCATAGAAGCAGTTGAAATCGGCGTGATGAAGAAGCTGAAATCAAAGCAAGAAGAGATAGAGAAGAT TGGGAAACTGAACTGGGCATTAGGAGAAAGAGTCAAATCTCTCTGCATAGAGAATCAGATATGGCGCGACTTAGCACAAA CCAACGAAGCCACCGCAAACGCTCTCCGATCCAATCTCGAGCAGGTACTAGCACAACGCGACGGCGGAGGCGGTGGAGCC ACCGTGTCACCCGCCGGAGCGATGGTGGACGATGCAGAGTCATGTTGTGGCAGCACTGACGGCGATGATGAGGGGTGGCG CACGTTAGCGGGAGAGTGCGCAGGGGTGAAGGATAAGGATAGTGGCAGCAGATTGTGCAGGAACTGTGGAAAAGATGAAT CGTGCGTGCTGATTTTGCCGTGCAGGCACCTGTGTTTGTGTACAGTTTGTGGGTCTACCCTACACACTTGTCCTATCTGT AAATCCTTCAAAACTGCCAGCGTTCATGTTAACATGTTCTAAATATGGTAAAAACAAACCCTATATCCTCCTACCCTACA AAGAAAAACTCAATTTTCACCTAATGAAAAGGGTACAAAAAATTTGTTCATTTTGATCCAATTTGTTCTTGTCCATATGC TTCAATGTTTTGTAGTTTAGATCTAAATATCCAGATAATTTCATTAAATTTTAGCTGCAAATTTCACTTACCTTGTGCAT TTTTGGTTGTGTGGTTTTTTAATTTTTTTACTTTTTACCCTCAAGTTTTGAAGTAACAATGGTTATTGTTTTAGAAATTG AAGGTTAATTATTAAGTTTTCTTCAATTTTACCATCATTTGATATTATACTACACTGTCATTAATTTTCACTAGCAATCT TCATAAATTACTTATCAATTACTAGCATTCTCTTTAAACTATCTAATTTAAAGAAAGAAAAACAGATGAAGGGGCTCAAA CATGTGGTATAGCTTGTTCAAGCTAATGAGTTTGCGAATGTCCGTCCATTGTTAGATAGGGATTGAGAGACTTGCCTCAC GCTATTTCAAGAAATCTAATGCTCCTGCTGATTATCTCTCTTAGATGGGTGCCTCGTCTCTATACTGGTTTACGTACGTA CTATCCTTGAGAATCCTCCTAATCAGGGACGGATCCAAGTACATTGGTATGAGGGTAAATGCCCTCACTTAATTTTAGAA AAACATTAGAAAAAAAATTGAGGGGTAAAAGTATGTGGTTTTTTATGGCTCATTTGATAAAAAAAAATGCCCTCACTTGT GTTCCACATTACTAAATGCTCTCACTTGTGGACTGTCAAAAAAAAATGTTCTCACCTGTGTCCCACATTGCTAAATGCCC TCACTTGAGTAGTAAAAATATGTGGTTTCTGATGGTTCCTTTGGTAAAAAATGTTCTCACTTGTGTCCCCTTTGGTAAAA AAATGTCTCACGTATGTTAACTTTTTTGTTATTAATTTATATATATATATTTTGCCCATACTACATCAAATTTCTGAATC CGTCACTGCTCCTAATTAAGTTGTCCTATGCTTCAATTACTATGTTTTAAGAGTGTAGTTTCTTCTCTTTTTTTAATTTC ACACCGATAAAACATGTGGCGTATTAGCTGTGGTAAATGTGAAAAATGAAAAAGGTAGTTTTGTGGGGCCCGGGGCGCAT CTAGGCGACAGTTCCCCCAATGGAGAAACTAGGTAAATCTCGAAGGGATAGAGAAGTGCGCGTGGGTGGGAAGGCGCGTG GGGTCAACTAAGTGGGGACAGAAAGCGACATGTGTGCGGCAAAAGCTGACACGTAGGACGCGCGCAAATGTCGCTGTTAT TATTGAAGAGTGCCTGCCTGCAACGGCCATAAGATAAGAGGTGAGGCTTTAGACCAAAAGCCAATGCACAACCCGACACA CACGATAACCAGTGGTTCCCAACACCCCGCCATAAATAAAAATTATTAACCTTACGTTAATTACTGTTGGACAATTTCTA CTCAATGAAGTAAAAGTCATGATCAGAATCTGTATATCACTGCCACGGTTATTGTGATCAATAGTATTGGATGGTGTACC ATAAAGTTTAGAACAACCGGTAAATAGTTCGGCTCCTTAAATATTTAGTTCAGATTTAATTCTTAGGTGTGCAGTGCGTA TGAGAAGCATTTGTTGAGAAAGAAATCTACTAATTACTAAATTAATTTTCAAATCCTAAAAGATTAATCTCATGACTATA GGCGGTTACGTAGCTTAAGAAAGTAAAAGATACTAGCTACTATATTGATAGTGTACAGAGAACCTGTAATTTTTTTGTTT ATTCACGGATAATGCAAAAAAAGTGTTGTTAATAAATTAGGAGGCGGTGCAGGTGGATTATTATGATCATTTTGGGGAGT GAAACAGAAAAGAAAAGGAAAGGTAATGGTGATGGTGGTTGAGTGAGGCGTGTCATACGAAGCTTACTGTGAGACCTTGA TTCGCTCTCTTGTCACTGTTAAATAGGGACTAGAGCTAGCTACCAGTACCCAACC
CDS sequence (LotjaGi3g1v0139500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTTGAAGCTCGTCATCTCAATCTTTTTCCTCCTCAACTCATTACCAACCGGGAAATGATGGTGAACCCAGTTGA GACAAACGCTAATAATCTCTACAACACCACCACCCAGATGTGCTATTCATCAGTTTTACCATTATCCGGCGGCGTCGGTG GCGCAACGCCGGAAAACATGCTCCTTCCGGCGGCGTATAATTCCATCATGGACAACTCCTTTCCTCAGAAAAACTCAATG AAATCTGACAGTGGCCTCACCTACAATGTTCCCTTATCAACCAAAGCCTGCAACACAAGAGAGAATTCAACTTCAATCAA CAACTTTCCATTCCCATCTTACCCTTCTTCCCGAACCACCGCCACCGCCGCCGTGAACAAAAGCTGCGCCTCCTCATCCT TCTCCTTCCTCGGTGAAGACATTTCCCTTCAGATCCACCAGCAACAAGTCGACATCGATAATCTCATTGCACAACGGATG GAGAAGGTGAGAATGGAGGTAGATGAAAAACGCAAGAGGCAAGCGAAGAGGCTCATAGAAGCAGTTGAAATCGGCGTGAT GAAGAAGCTGAAATCAAAGCAAGAAGAGATAGAGAAGATTGGGAAACTGAACTGGGCATTAGGAGAAAGAGTCAAATCTC TCTGCATAGAGAATCAGATATGGCGCGACTTAGCACAAACCAACGAAGCCACCGCAAACGCTCTCCGATCCAATCTCGAG CAGGTACTAGCACAACGCGACGGCGGAGGCGGTGGAGCCACCGTGTCACCCGCCGGAGCGATGGTGGACGATGCAGAGTC ATGTTGTGGCAGCACTGACGGCGATGATGAGGGGTGGCGCACGTTAGCGGGAGAGTGCGCAGGGGTGAAGGATAAGGATA GTGGCAGCAGATTGTGCAGGAACTGTGGAAAAGATGAATCGTGCGTGCTGATTTTGCCGTGCAGGCACCTGTGTTTGTGT ACAGTTTGTGGGTCTACCCTACACACTTGTCCTATCTGTAAATCCTTCAAAACTGCCAGCGTTCATGTTAACATGTTCTA A
Protein sequence (LotjaGi3g1v0139500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVEARHLNLFPPQLITNREMMVNPVETNANNLYNTTTQMCYSSVLPLSGGVGGATPENMLLPAAYNSIMDNSFPQKNSM KSDSGLTYNVPLSTKACNTRENSTSINNFPFPSYPSSRTTATAAVNKSCASSSFSFLGEDISLQIHQQQVDIDNLIAQRM EKVRMEVDEKRKRQAKRLIEAVEIGVMKKLKSKQEEIEKIGKLNWALGERVKSLCIENQIWRDLAQTNEATANALRSNLE QVLAQRDGGGGGATVSPAGAMVDDAESCCGSTDGDDEGWRTLAGECAGVKDKDSGSRLCRNCGKDESCVLILPCRHLCLC TVCGSTLHTCPICKSFKTASVHVNMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 346 | 346 | 4.4E-75 | – | |
| PANTHER | 18 | 345 | 328 | 1.8E-120 | – | |
| PANTHER | 18 | 345 | 328 | 1.8E-120 | ||
| Gene3D | 287 | 345 | 59 | 1.6E-8 | ||
| Pfam | 297 | 335 | 39 | 1.7E-7 | – | |
| ProSiteProfiles | 299 | 334 | 36 | 9.111 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0139500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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