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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0142400 |
| Transcript ID | LotjaGi3g1v0142400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP dependent RNA helicase; TAIR: AT1G59990.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q944S1|RH22_ARATH DEAD-box ATP-dependent RNA helicase 22; TrEMBL-Plants: tr|A0A0B2SLM2|A0A0B2SLM2_GLYSO DEAD-box ATP-dependent RNA helicase 22; Found in the gene: LotjaGi3g1v0142400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:18876989..18884401) extracted from Lotus japonicus Gifu genome v1.2.
GTGTAGTCTCCCTAAAACCCTAAACCCCTCTATGTCCATTTGCATTTCTGCTTGTTTCTCAACTAACATCGTTATTCAGT GAAGAAGAAAGAAACTCCAAATGATTGTTATCCGTTCTGCTTCGATGCTCCATCTCCAAAATCTCCCACTTCGCTACCAA TTCTTCTCTCACTTCACCCATGCTTACTCCTCTCTTCGCAATGCCACCTCGCCTTCTCTATTCAACTTCAAACCTCGCTT CATTCCTCTAACCCTTCCACGCCAAACGCAGTCACGGCTTGTTGCTTCTTCTTCTTCTTCTTCACCAGAAGCTTCTTCCA ATGGCAGAGACACTTTCTTTGCTGAAGAACACGTTCTCTGGAGTTCACTCGGGCTCTCTGATACCCTTTCTCGAGGTCTC TCTGACATTGGCTTCAAAAGACCCTCTCTCGTTCAGGTCCTCATTTTTACGATGACCCTTTTGTCAATTCTTGCTCCTTT TGTGATTTTCGTTGAAATTGAGTGACACCCATATGTAAAAATTCAATCTTGTTTACTTTTTGTGTTTACTTTTTCACTCA TTTTTTCGATGACCCTTTTGTCAATTCGTGCTCCCTTTGTGATTTTCGTTGAAATTGAGTCATACCCATATATAAAAATT CAATTTTGTTTACTAATTGTGTTTATGCTTGAGCTGATAACTGGGTTTTGTTGATTTTTTGTTTCTGGTGCTGAGGACTA TGATATGGGCATTTTGATGATTCTTCTTTGTGTGTTCAGGCTTCTTCGATACCGTCTGTGCTGTCAGGGAAAGATGTGGT CATTGCAGCGGAGACCGGCAGTGGTAAGACATACAGTTACCTGGCTCCTCTTATTGATAAGCTAGCCCAGGAACATTCTC CACATGCTGTACCTGACCAAGATGGGTTTTCGCCTCGGAAAATTCTGCTTGTCCTTTGTCCAAATGTGCAACTGTGTGAG CAGGTAGTTAGGATGGCTGACAGACTCCGAGGAGACACTGGTGAAACCATAGTTAGTGTGGCAGCCATTTGTGGCAGACA GGTAGTGAATGGTGATGCTTTAGCTTATTGTTTTATTTCATTTTCTGTATTTTGGTTTATCATTATGGAATTGTAGTTAT ATATGAATGCCTTGTTGTTTCTATATACAAGATTTTAGCTCTCTTTTTGAATTTTCTGTGTGTGATTCTTAATACGAAGA ATATTTTTGGCTCAGGGATGGCCAACTCGAGAACCTGATGTCATTGTGACGACACCTGCTACTCTTCTGAATTATGTTGA TCGGGATAGATCTCGCCGCATGGAATTTATGCGTGGTGTCAAATATGTGGTATCTTTCTTGCATTATGATCTGCGGCTGT GCCGATCTAGAAGATGCCTAGTTTAAGCTTTCATTCTTATTACTTGTAATGTTTTATTTCTATTTCTATTTGGCAGGTGT TTGATGAAGCTGATATGCTTCTATGTGGGAGCTTCCAGAATAAAGTAATCCGCTTGATAAACTTGCTCCGCTATGATGAA AAACTCTCGTCATCAAAAGGCACTGTATCAGAGTTGCCAGTGGAACTTGAATCATCCTTGTCTTCACATGATGCTTCGGA AGGGGAAGAGGAACTTCCAACTGAAGCCATCTCAGAAGAGGATGTTGATGATGATAGTGAGGATATCATCAGTATTGATA ATGAAGCTGAATCTGATAAACGGAGAGACTGGAGAAGGGGGGCAAGGAAAAATTATGAGCGTAGTAAACAGTATATTTTT GTTGCAGCTACACTTCCAGAGAATGGAAAGAAAACAGCTGGAGGAATATTGAAACATATGTTTCCTGGTGCTAAGTGGGT TAGTGGAAACTATCTTCATTGTCATAATCCAAGGTGCTTTATTATTTTCCTCCATGTCAGTACTAATTAGTTATTACTAG GAACGGTGTTTCACTTTTTTTCTTTCTACTTGTTACCCAGCTATTGCTGTGGTGAAATAATGGCATGTATCCATCAAGAA TATTAGAATAGGAAAGTGGTTAAATGTCTTAATGGTTCCATTTGATGTGAACTGAAGATAAGGCGAATGGAATGTATATG TAGAAACTTTTAAGGCAAATATTACTATAATCATAAATGGCAAGACTCTTTTCTAAAATCTAAGTTTAGTGTCCATAAGG ATATCAAGGTGATTGCCTAGAAAGTATGATCATTAGTGTGAACCTTAAATTAGGCACAGAGATTATAATGCCTAGAAAGT AAGTCACAGTTCACTACTGCAGTGTATGATAAAACACATGGAGTTAGATGTGTTTTTTGTCAGGGAAAAGTTCTGACTAA ATCACTCTAAATGACTAAATCTCACATTCCAGCTCATGAGCAAGTAGCAGATACTACGGCTTTATCCAAACAGAGGTTCT CTGAACTCTGAATTAAACTCAGGGCGTTATCTCCTTCCGGTCCACCCTGAGATTAAGGAGGGAATGTTACATATATGTGC TTCTCTACTCTTTGGTGTTATTTCACATATAATTAGTTAGCTTTCAGTTATTATCTCTTAGTGCATTTTGTTTGTTAGTT CTCAGTTTGTTAGAGGTAGCTATTGTGCTCTTAAGCTTCGGTTAAAAGCTTCTCATAGATTCACAGAACTATAATAGGAT GATGCCCGATCTACTCTGATTGTACTAATAAACACTAAACAGTTTTCACTTTTCAGATTCTCTCTCTCTCATCTTACAAT TGTAACATGCCCTTCTGATTAGTCTTTCATAGAATACTATCTAATCATTCACTTATCTTCATTGGAGGGTAATGATGTGA CTTCACAATTAAAGCATTAGTTATTGATGCATCCTTTCTTTGTTGAAAAACTGAAACATACTAACTATATGTACATTGTC ATTGAACTTGTGATATTTAGTGATACCCTACCCATTCTAGTCTGCTACTAATAGTGTCCTTGTTTATGCATCTCTGATTG TGAGTTAATATGTTACTTTGGCTTCTCAATTTTTAGATTGGAGCAAAGATGGATTGAAGTCACGGTTGATACACAGGTGG GTGAACTCATAAAGGCTGTGAAGCACGGTTTCACAGCCGAATATTTGGATAATGCTGGTGGCGTTCACAGAACAATGGTG TTTGCCAACACTGTTGAGGCTGTTGATGCTGTTGCAAAGATATTGCTACGGTCAGGGATTGAGTGTTTACTTTATCATAA GAATTGCACATTAGAAGAGCGCGCACAGACCTTGGTTGATTTCCATGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAG CTGCTCGTGGTGTAGACATTCCAAATGTCTTGCATGTTATTCAGGTATACACTCCTTTTACATGTCATAATAGCTTCTGT GATAGCAAAAACTGTGTTCATGCCAAGTTGCAAAACAAACAAAAAGTAAGATTAAACATCAGCTTTTATATTTTGATCAA ATGGCAGTTTTACTTTATAATCAGAAAATAGAAATACAATGTGCATAAACAGGAAAGTAACCAATATATCTTGCTTATGA TCTTACTGTTTCTTCATAGTCCATATTTTGCTTATTTAATTTATTTGGAAGTGTCTCCTATGTAGAAAATATCTCCTTTT CAGAGGCACTCCCCATAGCATAACAACCTTGGAAAAGAATCTCCATAGATTTTATCTCAACTATTCCAAATGAGGGTTTG CTTCCATCATAGATCCTTGTGATTTCTTGCCACAAAGAGCAGAAATTATAGTATTCCTTGCCATCACGTTTTCAACAAGC TGCTCAGTTGATAGAACCCAGCCAAGAAATAGAAGAAATCGATATTATTCAAGTAAACTACAAGATGCTGAGTAATCCGA GAGTCCCAGCTCCTCTCCCTAAATCCCAAAAGATGATAATACTCTCTAACTCTCTTATTTATACTCTCACTCTCTAACTA AGTGAAACTTCCTCAACTAACTAGCCTATAGGGTGCGGGTACCTATCAATACTCTCCCTCTTCAAAATTCACCTTGTCCT CAGGTGAAGGCTGGAATACAAGCTAAAGAATTGAAGAATTAATCCAAAATACATACAAAGAAAAATTACAAAACTTCTTT GATTCTTCTCTGTTCCTTTCCACTTTAAGCTTTGGCTGACTAGCTTCACACTCCATAGCCCAACACATTTGGATGACCAG GTTCACGTTTAATTCCTCCCATCAGTGATTTGGGCTTGGCCCATTCGTTTTGGATGGGGGTTCAGCTGGTACCCACTCAT TTCGGCTCTTCTCCGTGATGCACTTACTCCTGGAAAAATCCCATACATTCGTTGCTGGCTCTGCTTGCACCTCGCAAGTA GCTGATTCTGACAGTTTGGTGGCGGATATCCCCGATCCCAGTTCTGGAAGGGGTCGGTTGACCCAATCGCTTGGCCTCCC TCCTCCGTCAGGTTGTTCGAACAGAATTCGCTTGACCCACAAAGAATGTTGATCTTGCAAGTGTGCCCTCTGTTTCAGCA GCCGTCGCTGTTGCCCTTACGACATGGACTTCACCTTCTTCACCGTTCATGACGACAGACCATTCGCTGAATGCACCTCT CAACATTAAGTGGTTTTGGTGGTGGACGTGTCTCCATCCCCCGCTTCTTCTTTCTCTCTTCTGTTATCCCACAGTTTGGG ACAGCCCTTTTGGAGCTGATTTCTGATTTCTCTTTCAACATTGTGATTCTTGATTGAGACAACTTGCCAATCACCCCGCT GCTATGGAAATGCAGGGTCCTGCCACTCTTTACCCCCAATGTAGATTCACCGTACGATGGCGGTGGATGCCTTCTTCCCC CTTTGTAGGTTTCGTGTCTTGCAGCTGCTTTACGAGGATGTCCACCCACCTGTTGTCCTGCTCCTGCTTCTCTGTCGTCA TGAGACTCAAGACTATTATATCTGTCTCCGACTTCCTCCGTGACGTCTCCGCTGTTGTTCTCTCCGCCTCGCTGCCTCTC ACTCTGCCTCTGCTGTGGCCTCCGATTCTTTCCTTTCCTGTTCCTCCTTCTGCTTTCTCTCATCTTCCTTTCTCCAATCT GCCATCTCGTTCATCAATTCTCTCAGAAGTGCACCTACTTCCTTCTTCACTTGTGGTGACAAGGAACAACCCCTGTAATC CTCCCTTTTCTTGCCAGCCATCTGCTTCAAATGCTGTTTGCTAGATTTTCAGGGCACCTGAATCGGTGCTTTGATACCAA TGATAGAACCCAACCAAGAAATAGTAGAAATTGATATTATTCTAGAACAGAAAAGATGCTGAGTAATCTGATCCCTTAAA TCCCTATTCTTAAATGATCCCAAAAGATGATAATACTCTCTTAACTCTTATTTATAATCTCACTCTTTAACTAAGTGAAA CTCCCTCAACTACCTAGCCTATAGGATGCGGGTACCTATCATCAGTCCCTTCCATTAAATACCCCAGATTCAATATCGCA CCTTCTTGAATCTTGATCTTGCTTTGATACCACTCTATCATGTTTGTGGCATGGCTCCAACACAGCTTTGTTTGCAGTTG GCTGAAAACCAAGTTAGCTTCACTATCTAGGTCTGAAGAGTGTGTTTGGGAAAGTAAGATGGCAAGAGTGCTTTACATTA TCTCTATCTTGCTCACAAACTCTACCACTATATGCCTTGGCTAAATGATGCCTCCCCTATAATCCCTAACCTCAACCGAT GTATGGCTACAATCAATGATCTAGAATTTTCCCTACAAAGCATCTTACATATTTACAAAAACTATTCCTATGGAGAGTTC TAATGTATTATTCTCAAGGAACTTTCTGGATTCTGGAACCCTGGATATTTACAAATGCCAAGGAGTTTTCTTTATTATTC TAGAGTGAAGAGTGTATAAAAAGGATTCTTGCCTAACATTGGCATGGCAACCTGGTTTCTTTGCATGGTTCCTTCATCCA TTTATCTTGAATACACATATTTAATTTATGACTCTTAAATCATTACATGACCATGCATGCATATTGCATCTCACTCCTTT ATCTTCATCTTATGACCTCTCACACTACTATTAATGACCGTGCTTTCTATAGTATTTTCTTGTGTATTCATTTTTAAAGT CTGTTAGGTGTTATATTATATTGTTATCTAGGTGTTCACTCTCAATGCTGTTCATGTATTTCAGGCAGACTTTGCTACCT CTGCTGTAGACTTCTTGCACAGGGTTGGTCGTACAGCTAGAGCTGGCCAATTTGGACTTGTTACAAGCATGTACACTGAA TCCAACAGGGAGCTTGTTAATGCAGTTCGTCGGGCAGCAGACCTTGGTCAACCTGTGGTAAATTTTGAAACAGCATTTTT GGTCACATAGTTCCAACTGTGAATTATTCATAGATTCCAAAATTTGTGGAGTGATATTTAATATTTTACTGCAGGAGACT GCATTTAGCAGGAAAAGAAGCTTCCGTAACAAGCTCAAAAAGAGGGGTAATGTTTAATATTTGGTTCCACAAAGCTTTAA AAATCAACATTCTATATGAATATATACTATGCATAGTTGTTCGGTGAGGATGATAAGTATGTGTGTTCTGAATCTTGCAT CAGCATTTATAGCTTTGTACACTACTTAGAGGAGTTTAAGGGTGTGTTTGGCTACCAGTTTGCATGCGAACAGACGCTCT CGTGCACTTCAAGATAAAAAATGAATGGAAATCTTGCGAATCGAGTTGAAAGTCTGTTCATGTTTTACTCAACTGATATC TAAATACACCAAGTCTCTTGGTATCTAACTTGTTCTTTTTGTATTTGTAGCGCGTGCCAACCAAGCTAGAGGTCCAGAAA TTATTGAAGAGAGTTTTGTAGCCTGAGAATACAAGCTTATGTGACCCTAGCCCTGGGTATCTGAACCAGAAAACACCTAA TGACAATGTGAACATCGCTATGGGCCGTTGCTTTGAAGTGTACTAGCTGTTACACCTGCATGCCTCAGATTATATAGCAC GGGTGGGTGCAGCATGTATTGAATCCTACCGCTTCACGGGGATGGTGAAAAATATGCTCATTTATGCGCCAATCAAGCTT CTAGGGAAGTTGCTGATATTGGAAAATACTTTTCAGGGCAATTAGTTATCTTGGTTCCTATCATTTTCACCTTGTAAATT ATGAGACGATTCTATTAGTCACTTATCATTTTTGTTCTTCATAATTACTTGTGATTGTGTTTCATTATTCTATGCAGCAA GGCAAATGCTATTTTGCATACCCAGATTTATTATGTGAATGTTGTTGGATAGTTCTTTTCAAGAGTGGGATACTGGATTT ATTTTGAAGTTAATTATTGTAAATTACTAGTTTTTTATATTAAAAAATAGAGGTATTATTATGCATATGATATATGTGCC ATATAAATTACCCAGTTACTTGTGAATTGTAGATGTAAACTAATGGTATTCCG
CDS sequence (LotjaGi3g1v0142400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGTTATCCGTTCTGCTTCGATGCTCCATCTCCAAAATCTCCCACTTCGCTACCAATTCTTCTCTCACTTCACCCA TGCTTACTCCTCTCTTCGCAATGCCACCTCGCCTTCTCTATTCAACTTCAAACCTCGCTTCATTCCTCTAACCCTTCCAC GCCAAACGCAGTCACGGCTTGTTGCTTCTTCTTCTTCTTCTTCACCAGAAGCTTCTTCCAATGGCAGAGACACTTTCTTT GCTGAAGAACACGTTCTCTGGAGTTCACTCGGGCTCTCTGATACCCTTTCTCGAGGTCTCTCTGACATTGGCTTCAAAAG ACCCTCTCTCGTTCAGGCTTCTTCGATACCGTCTGTGCTGTCAGGGAAAGATGTGGTCATTGCAGCGGAGACCGGCAGTG GTAAGACATACAGTTACCTGGCTCCTCTTATTGATAAGCTAGCCCAGGAACATTCTCCACATGCTGTACCTGACCAAGAT GGGTTTTCGCCTCGGAAAATTCTGCTTGTCCTTTGTCCAAATGTGCAACTGTGTGAGCAGGTAGTTAGGATGGCTGACAG ACTCCGAGGAGACACTGGTGAAACCATAGTTAGTGTGGCAGCCATTTGTGGCAGACAGGGATGGCCAACTCGAGAACCTG ATGTCATTGTGACGACACCTGCTACTCTTCTGAATTATGTTGATCGGGATAGATCTCGCCGCATGGAATTTATGCGTGGT GTCAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTATGTGGGAGCTTCCAGAATAAAGTAATCCGCTTGATAAACTT GCTCCGCTATGATGAAAAACTCTCGTCATCAAAAGGCACTGTATCAGAGTTGCCAGTGGAACTTGAATCATCCTTGTCTT CACATGATGCTTCGGAAGGGGAAGAGGAACTTCCAACTGAAGCCATCTCAGAAGAGGATGTTGATGATGATAGTGAGGAT ATCATCAGTATTGATAATGAAGCTGAATCTGATAAACGGAGAGACTGGAGAAGGGGGGCAAGGAAAAATTATGAGCGTAG TAAACAGTATATTTTTGTTGCAGCTACACTTCCAGAGAATGGAAAGAAAACAGCTGGAGGAATATTGAAACATATGTTTC CTGGTGCTAAGTGGGTTAGTGGAAACTATCTTCATTGTCATAATCCAAGATTGGAGCAAAGATGGATTGAAGTCACGGTT GATACACAGGTGGGTGAACTCATAAAGGCTGTGAAGCACGGTTTCACAGCCGAATATTTGGATAATGCTGGTGGCGTTCA CAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGATGCTGTTGCAAAGATATTGCTACGGTCAGGGATTGAGTGTT TACTTTATCATAAGAATTGCACATTAGAAGAGCGCGCACAGACCTTGGTTGATTTCCATGAGAAAGGTGGTGTTCTTGTA TGTACTGATGCAGCTGCTCGTGGTGTAGACATTCCAAATGTCTTGCATGTTATTCAGGCAGACTTTGCTACCTCTGCTGT AGACTTCTTGCACAGGGTTGGTCGTACAGCTAGAGCTGGCCAATTTGGACTTGTTACAAGCATGTACACTGAATCCAACA GGGAGCTTGTTAATGCAGTTCGTCGGGCAGCAGACCTTGGTCAACCTGTGGAGACTGCATTTAGCAGGAAAAGAAGCTTC CGTAACAAGCTCAAAAAGAGGGCGCGTGCCAACCAAGCTAGAGGTCCAGAAATTATTGAAGAGAGTTTTGTAGCCTGA
Protein sequence (LotjaGi3g1v0142400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIVIRSASMLHLQNLPLRYQFFSHFTHAYSSLRNATSPSLFNFKPRFIPLTLPRQTQSRLVASSSSSSPEASSNGRDTFF AEEHVLWSSLGLSDTLSRGLSDIGFKRPSLVQASSIPSVLSGKDVVIAAETGSGKTYSYLAPLIDKLAQEHSPHAVPDQD GFSPRKILLVLCPNVQLCEQVVRMADRLRGDTGETIVSVAAICGRQGWPTREPDVIVTTPATLLNYVDRDRSRRMEFMRG VKYVVFDEADMLLCGSFQNKVIRLINLLRYDEKLSSSKGTVSELPVELESSLSSHDASEGEEELPTEAISEEDVDDDSED IISIDNEAESDKRRDWRRGARKNYERSKQYIFVAATLPENGKKTAGGILKHMFPGAKWVSGNYLHCHNPRLEQRWIEVTV DTQVGELIKAVKHGFTAEYLDNAGGVHRTMVFANTVEAVDAVAKILLRSGIECLLYHKNCTLEERAQTLVDFHEKGGVLV CTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQFGLVTSMYTESNRELVNAVRRAADLGQPVETAFSRKRSF RNKLKKRARANQARGPEIIEESFVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 79 | 567 | 489 | 7.2E-93 | – | |
| PANTHER | 79 | 567 | 489 | 7.2E-93 | – | |
| ProSiteProfiles | 85 | 113 | 29 | 9.657 | ||
| CDD | 96 | 271 | 176 | 1.02174E-42 | – | |
| SMART | 104 | 394 | 291 | 6.3E-32 | ||
| Pfam | 111 | 358 | 248 | 1.8E-24 | ||
| ProSiteProfiles | 116 | 375 | 260 | 18.551 | ||
| SUPERFAMILY | 116 | 532 | 417 | 4.42E-47 | ||
| MobiDBLite | 285 | 326 | 42 | - | – | |
| MobiDBLite | 303 | 324 | 22 | - | – | |
| CDD | 391 | 529 | 139 | 2.98176E-36 | – | |
| Gene3D | 392 | 584 | 193 | 1.3E-36 | – | |
| ProSiteProfiles | 403 | 568 | 166 | 16.883 | ||
| Pfam | 423 | 520 | 98 | 1.2E-20 | ||
| SMART | 440 | 520 | 81 | 1.5E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0142400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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