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LotjaGi3g1v0155300.1

Overview

Field Value
Gene ID LotjaGi3g1v0155300
Transcript ID LotjaGi3g1v0155300.1
Lotus japonicus genome version Gifu v1.2
Description L-threonine 3-dehydrogenase; TAIR: AT3G15090.1 GroES-like zinc-binding alcohol dehydrogenase family protein; Swiss-Prot: sp|Q0VC50|RT4I1_BOVIN Reticulon-4-interacting protein 1, mitochondrial; TrEMBL-Plants: tr|I1LV40|I1LV40_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0155300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:21189102..21195760) extracted from Lotus japonicus Gifu genome v1.2.

GAACTGAATAAATATAACAAAGCATTGTACTAAACCTCCACGTACCTCTTTGGTTCTCTGCGGACCAAAACACAGACACG TTCCCCTTGTCTCCATTTCTTTGACATGCACACACACTCTGATTCCTCTAATTCACTACTGCAACTACTACCACTACCAA TGCTCTGAAATTGAATCCAACACTGATTCAGATTGAGATTCAGAAGAAGAAGAAGAAGAAGATGCGGATCCTCACCAACC GCGACGGATTCAGAAAAACCACCGTCACCACCACCGCCTCCAATTACCATCTCAAATCCCACATCTCCACCTGCAGAGCC ATTCTTCTTCGCTCATTCGGTGGTCCAGAGAAGCTCGAGCTCCACACAAATGTTCCAGTTCCTCCTCTCAAACCGCACGA AGTCCTCGTCCGCGCTCGCGCCGTTTCCGTCAACCCTTTGGATACCCGAGTGAGAATTTCGACTCAAAATTCGTGGTTTT TTGAAAATTTGAAAATGGGTCTGTGAAAATTTTCTGTGTTTTCAGATGCGTGCTGGTTATGGGCGTTCCATTTTTGAGCC GCTACTGCCGGTCATTTTGGGACGGGATGTCAGCGGCGAGGTGGCGGCGGTCGGAGGTTCGGTACGGGCGGTGAGTGTGG GCCAGCAGGTTTTTGGGGCTCTGCATCCTACTGCTGTGAGGGGCACTTATGCTGACTATGCTATTCTCTCCCAAGATGAA GTTACAACAAAACCAGATTCACTTTCTCATGTGGTATGTATGTGTTGTTCTTGGAAGATTTTGATTTCATGCTTTCTATT ATTTTGACAGAGATTTGTTCTATTGAGTTTTTTTTTTTTTTAACAGACAAATGTTAGTTGTTAGTAATGTTACTAATGTT AGTAAATTAGTCCATTCTCAGAGGTTCGAACCCCGGACCCTTCACCCTTCATTCCCTCCCAACCCTCATGTCGCCTAGCT CTTACCATTTATTTGATGTTTAAAGTCCTCTTGATTCTGTTTTGATCCGTTGGAGCGTTTCCAAATTTTATTGCAACTTT CTTTTGAATAGTTTTGTTATGCTACAATTGTGTACATAGTTAGATTAAGTTAGTTAGTTTACAGCTCAGTTGTAACTGAA TCTGTTTTAGATAGTTAGTTAGGTTCTGCCTATGTGACTAACTGTCTCAGAACTGTTATAATAGAATCTGTTTGCTGTTA CCAGCAGCAGAGTTAATTGTATTCACCTGAAGACTATGCATTATAACAGCATTCAATCTAATTCTCTGAATCTCTGGTTT TCTCCTTCCTTCTTACATTTTCACCTTTTCCTCACCTTCAAAATGGCTAAAGAGCGCTGGGGATGTTGTGATTCCGTGCA TTGTTGCGTCTGTTCAATTGGTTGGGGTCCACACTTTCTGTCGATATTTCACTTTTTAACTTCCTTTTGAACTTGATTAC CCTGAGGTGAGGGATTCTCTTTACTAGGGAAAGTGTGGATATATAACCCATAGCTATTGAAATGTCAATTGTGATAAAAT GCATGCATGTGTAAAAATAAGTAATGGAGTTGTTAAAGTTTACTCTCTGCACTTTCTTCTTGAACCTAAACCCCCTAACT TTCAATGAACTAGATTACTTTCATTTACCTCTGTTATCGGCAAGATTAGTTAGAACATAATCTGACGAATGACACCAGAG ATTATAAGTAATGAATCACTGGCTAAGATTTTGCTTTCTTTTTTTGTGTATGAGTGATCATTGTGTATATGAACATTGTT GTACCTTGCGGATGGGTAGACTGAGAGAATGAAATGCTTATTGATTAAAGGAGAAGAACCAATTTTTGGTACATGAGTTG GAATATGTTGGGCTACATAGCTGTATTGCAGTCAACATGGCCACATGCTCTACAGTAGCGAGGGATTATTTTACTGTAAT TAATTCATAATAGTATTTGGAAAAGAATCTTTATTTTAAGATCTGTAGCTAGAAGGCAACAAAGAGAGCCTTAGTTGGAA TGAGCTATTCTATTGATCATGCAATATGTAGAATTACTCTATCAACTCAATTTTCACATTGGATTGATTCATTTTTTCCC CTTGGTCAAATTAGGTGAACATGATTACAATGAGGAATTTGGCTCCTCTAAAGTGAGGGAGTCACTTTAGAGGTGAAGCG AATGATCACAACACAGCTGTTGATTGAGAAATCAACGACAACACTTGACATTGTGATAAAAAACTTGCACTTGCATGACA AACTATATGATGTTCTTTAAATCTCAAGTGTTGATTGAGAAGTGACTAACTTTACCCTCTAAAATGACTTTCTCACTTTT GGAGGAGCCAAATCCCCATGAGATAACTTACAATAAGGTTGTTTGGTGACTTACTTAAAGGTTTTTATAGTGTGTTAGTA GACCAATAGCTAAATGTCTGTACTTGGATACATAAGAAAGTGTCTAGTCACTCTAGTGAGCCCATCTGAGGAGTTAAGAA GTAGTTACCACTTACCAATAGTTGTGTCAGTTGAGAAAAGGGGTGGATGTCCATATATGCTGATACCAGAGGAAAGGGAA TTTGGGTGGTTGTTTAATAAGTCAGAACAGCCAGGAGAGATTGTGGAGCCTCTCGAACTGCTATCTCACTTGTACATGAC TGGTTATCCTTGTTCCACAGTGAGTCGAGGTTGTAACCCGAGTTTCTGGAAATAAACATTCTACCTTTGTGCAGCTTCTT ATAGCAGTGTAACATGCTGGAGGAAGTGTTCAGCTTATGCATTATGCTAGTCTTTCTAAAATGTCCTTCAACTGCGTATT ATCCAAAGTGTGCTTGTTTCTTTCACACCCACTTGACTCTTCAAAGTGAGAGATTTAACAATTATCTTTGTCTGGGTATT TCTATTTTGTTGGTTGTACCGTCACTTTCATAATTACATGTTACAATATTATCGGTACTTTCTGATTGAACAGTTGACCA GTTTTTATTCTTCTTTTTTACTTTGAAGTTTGGACCATTTGTAGGCATTCTTGTAGTTAATATTCCCTTTATAATTATTT GTTTATTTGTTAATATATCTTGTAGGAAGCAAGTGCCATTCCTTTTGCAGCACTGACAGCTTGGCGTGCTCTAAAAAGTA CTGCTAGAATTAGTGAGGGGTATGTTAATACTGGTCAGATTATGATTTCCATTGATGAAAATTAATTGTTTCTCTTATAT ATTGTTTTCTATACTAGAGTTTCCATTTCTTGTATTTTTATTTTTTATAATCCAGTGAGTTTTCAGCTTGCTAAAAACTC TCTCGTATCACTTACTTATATCCTTTAGCTCATCTCAAACAGACAAAGGATATTAGTAGTGGGAGGTGGAGGAGCTGTAG GGCTTTCTGCAATTCAGATTGCAGTAGGAGCTGGTTGCCATGTTACCACTACTTGTGGAAAACAGAGCATTGACCGAGTG TTAGAAGCTGGTGCTGAGCAAGCTGTTGATTATGTTGATGAGGTGAGGAGTTGTTGAATATTCTTTTGTATCATATTTCG AGTCATTAATTCAGATATTTCAATTATGACAGCAGATGCTATTCAAGTTTTCTTTTTTGAAATATAGTTTCATGAAACGG AAAATGACTGAATACCGATGGTGACTGTGTTTATATAGATAAAATGAATAAATAAGTTGATTTATTTCATTTTACTTGTT TAGTTACATTAATACAGAACAGAAACAACTAAGCCGTTTTCTTAGTTTAATTTTTTCTCCAAGAAATACATATAAATCCT AATCCCATAAGGATTGAGACTCTCTAATACTACCAAATACCAAATCCATAAGGAAGCTTGGGGACTAACATATGACCCAA TATGGGATACAGAACATTAGATGGGTGGACCAGTTGATGGTTAGCCCAATAGCTAGATGTAGAGGGACACAGAAAAACTA TAACAAATTAATTTAGAATGATTTACTGGTAAACGGTCTATCTTTAAATTTAATACATGAGTTCCATGTAGCCAGCCCCA CCTAGTGGTGAAAGATTTGAATGTTCTTGTTGTATGACCTATACTGAACAGAAACTCGGAGCCCACATGATAAAACCCAA GACCCTAATTTACGGAAGTTAGTTTAATGAATGCCTCTAAGACTGAGAATATAAATTTAATTAAAGTGACAGATTATTAA AGCGAAGAACCCTACATTGTTGTCAACCAGTAAGTTTATTGAATAGTACAGTCAGCCCAAAATCAAAGCTGAAACCCAAA CTGCTAAGATAATTTTGATCTTTTAGCTTTTGCTTTCTTAATGCTGGTGCTTCTTGTAAAAGATGTGCTCTAACTTGATA ACTTCGTTCTTGATTGACAGGATGTTGAATTGGCTATAAAGGGGAAGTTCGATGCTGTTTTGGATACTATTGGTGTGCCA GAGACAGAACGAATGGGCGTTAATTTTCTAAAACGAGGGGGGCACTACATGACACTTCAGGTAGGATACAAAAGTTAATC AACTTTTTAATCATTATAATACTTGCAGTTGTCCTATCTTTGCTTATTGTCAGAATGACCTTCTAAACGCTAAAGTGATA TTTGAGCTTCAATCTCTCTTTTCTCTTTCATTGAAGGGTGAGGCAGCATCATTGGCTGATAGGTATGGGTTGACTATTGG ACTTCCTGCAGCTACAGCTGTTTTATTGAGAAAACAGATGCTATACCGATTCTCTCCAGGAATAGGTAGAAGTTGCTATG TGATTTCTCTCTTCTCTTTGACATTCTCCTTTTGATAAGCATAATATATATTTTATGTCCCTCCCCTCTTTCTTCTCCAT TGGGGGAGTACTGAATGCGGTGGAGTGGAAGTTGTTATTTATTCTGCTATTGTCTGAATGCATATTCTAATCTTAAAAAT AAAGTCAGGAATTTTCCTCCTGCCCGCCCCTACCTCACTGGGGAAAAAGAAGTTCTAAAGTAGAAATCTAAAGCGTTGAC AAAATATGGAGTTGAACCAATTGATAGCATATTTGTATCAGTTTTTCTCTCATAATAGTTTCTAATGCACAAAAGCTACT CACAACACAACACTCAGAATTTATTTTGGCTTTAGATATGACTAAACTATGCTTTCCCAAACATGCTGGTGTGCATAACC GATTAATAATATAGTTAAAATTAGTTAATATTCCCCTTCATGAAACCTTTTGGCCTCTGGTGTGCCTTTCCAGATATGAG ATGTTTGTATATGATATATTTACATGTATTTCCTTTAGGGTTTAGGGATCTATCTAGCTTTCTACTAGCTTGTAATGTAA ATGACGCAACACTGAATATCCTGAAATCAAATTCTCTTGTAAAAAAAGAAGAAAAGAAAGAATTATTTACCAGTTTCCTA CAATATTACTCAATAATGATTTCTCTGCATGATATCTTGCTCATAATTATAATTTTGTATACGGGTTCCTTCATGAGTTA CACAAAACGAGGACAGTGTTTATTTTGTTTTGACCCATGTTGACAAATGCCATTGGAAGTTTCTTCAAAAAGAAACGTGA AGCCAAATCCTTTCTTCCTTGTGATGCAGAGTACTCATGGACGTACATGAGGGCTGACTTAGAAGGTTTAACTGCGATTC GAAAGCTATGTGAAGCTGGGAAGATGAAGATACCTGTGGAGAAAACGTTTCCCATAACACAAGTAAAAGAGGCTCATGAG GCAAAAGACAAGAGAATCGTTGAAGGTAAAGTGGTGCTGGAAGTTGATTGACATCTTCAAGCTCATCTAGGAGTTGGTTA AACTAGACTTTCCCCACTTTTTTTTTTATGGGTATCCTCATAAATGGATTGTTCCACATTTAATTGAAAAATGGATAGTT TTTTTTTTCTGGGTTTTTACTGTAAGATAGAAAGTGAACTTTCTTGTAAATTTTGATTTATAATATCCAATCATAAAAAT CTGTAAATTGGTTTAAGTTTGTGTGGACCTTCACAACTGTCCTCTTTTGAAGTCATGTCAACTTGTGAAAGGTGCAGCTG TGGCGTTATTCCTCTATCACTTCCTCCCATGTGTTAGTTGCCTTCACCTCATTAGCAAATCAATGTTCTCTTGAACTGTG ACATTGAAAGAGAACACTGCTGAATTATTAACAGAAAAGCTTGCAAATTGTATTAACACAGTACTGGAGAGTGAAAGGTA GGCATCTGTTACTGTAATGGCTCGACTTATGAATGAGCATAGACAGGTAGCATTTGTCTGTTTACACAAAGCTTGATTTC TTCACAAAGTGCCTAACACTACTACTGGAGATATGTGACGGTTTGCAATGCTTTTTTGTCAATGGTCCATTTAAAGCCCA GCCAAATGGCTTGCCTTTACATAGAGCAATTTGCAATGCTTCAACATCATCAAAAATGCAGATGCCATGGCATAGTCATT CAAGATTGAATAATATTGTGTTAACACTTCTTTTCCACTACCACCTTTGATAAATATGAAGAGAAAAGAGAGAAATGGGT GTTATGATATGTGTTGTAACAGAAAATGCAGAGAAAGATACAAAAAAAAGTGTGGAAATAATATGCGAGTGAAAGCTAAG TGTGAACATATTATTACTCAAAAGGTGCAATGTATGCCCATATCATTCATATGTATACAACTTCTCAATTGTATTGGGTC TGGTTGAGCAAAATCTAAC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0155300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCGGATCCTCACCAACCGCGACGGATTCAGAAAAACCACCGTCACCACCACCGCCTCCAATTACCATCTCAAATCCCA CATCTCCACCTGCAGAGCCATTCTTCTTCGCTCATTCGGTGGTCCAGAGAAGCTCGAGCTCCACACAAATGTTCCAGTTC CTCCTCTCAAACCGCACGAAGTCCTCGTCCGCGCTCGCGCCGTTTCCGTCAACCCTTTGGATACCCGAATGCGTGCTGGT TATGGGCGTTCCATTTTTGAGCCGCTACTGCCGGTCATTTTGGGACGGGATGTCAGCGGCGAGGTGGCGGCGGTCGGAGG TTCGGTACGGGCGGTGAGTGTGGGCCAGCAGGTTTTTGGGGCTCTGCATCCTACTGCTGTGAGGGGCACTTATGCTGACT ATGCTATTCTCTCCCAAGATGAAGTTACAACAAAACCAGATTCACTTTCTCATGTGGAAGCAAGTGCCATTCCTTTTGCA GCACTGACAGCTTGGCGTGCTCTAAAAAGTACTGCTAGAATTAGTGAGGGACAAAGGATATTAGTAGTGGGAGGTGGAGG AGCTGTAGGGCTTTCTGCAATTCAGATTGCAGTAGGAGCTGGTTGCCATGTTACCACTACTTGTGGAAAACAGAGCATTG ACCGAGTGTTAGAAGCTGGTGCTGAGCAAGCTGTTGATTATGTTGATGAGGATGTTGAATTGGCTATAAAGGGGAAGTTC GATGCTGTTTTGGATACTATTGGTGTGCCAGAGACAGAACGAATGGGCGTTAATTTTCTAAAACGAGGGGGGCACTACAT GACACTTCAGGGTGAGGCAGCATCATTGGCTGATAGGTATGGGTTGACTATTGGACTTCCTGCAGCTACAGCTGTTTTAT TGAGAAAACAGATGCTATACCGATTCTCTCCAGGAATAGAGTACTCATGGACGTACATGAGGGCTGACTTAGAAGGTTTA ACTGCGATTCGAAAGCTATGTGAAGCTGGGAAGATGAAGATACCTGTGGAGAAAACGTTTCCCATAACACAAGTAAAAGA GGCTCATGAGGCAAAAGACAAGAGAATCGTTGAAGGTAAAGTGGTGCTGGAAGTTGATTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0155300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRILTNRDGFRKTTVTTTASNYHLKSHISTCRAILLRSFGGPEKLELHTNVPVPPLKPHEVLVRARAVSVNPLDTRMRAG YGRSIFEPLLPVILGRDVSGEVAAVGGSVRAVSVGQQVFGALHPTAVRGTYADYAILSQDEVTTKPDSLSHVEASAIPFA ALTAWRALKSTARISEGQRILVVGGGGAVGLSAIQIAVGAGCHVTTTCGKQSIDRVLEAGAEQAVDYVDEDVELAIKGKF DAVLDTIGVPETERMGVNFLKRGGHYMTLQGEAASLADRYGLTIGLPAATAVLLRKQMLYRFSPGIEYSWTYMRADLEGL TAIRKLCEAGKMKIPVEKTFPITQVKEAHEAKDKRIVEGKVVLEVD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43482
17 366 350 9.1E-114 –
PANTHER
PTHR43482:SF1
17 366 350 9.1E-114 –
SUPERFAMILY
SSF50129
28 181 154 1.29E-33
IPR011032
Gene3D
G3DSA:3.90.180.10
39 363 325 4.4E-97 –
SMART
SM00829
40 363 324 2.5E-11
IPR020843
Pfam
PF08240
58 120 63 1.6E-7
IPR013154
SUPERFAMILY
SSF51735
149 340 192 1.39E-29
IPR036291
Gene3D
G3DSA:3.40.50.720
157 334 178 4.4E-97 –
Pfam
PF13602
220 363 144 1.6E-18 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0155300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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