Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0160700 |
| Transcript ID | LotjaGi3g1v0160700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vicilin-like protein; TAIR: AT2G28490.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9SK09|VCL22_ARATH Vicilin-like seed storage protein At2g28490; TrEMBL-Plants: tr|I1M4N3|I1M4N3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0160700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:21877121..21880869) extracted from Lotus japonicus Gifu genome v1.2.
CTCCGAAGGAGGAGCTCAATTAACACGACTTTATACATGGTCACTAAGCTCCTTCTGATTCTACATGGTTGACACATGTC TCCCTTGAAATTCTCTGCTTCTATCATTATAGACCCTCCATTTCCCTCATCACTCAAGGATCAAATTACAAGCAACAAAA AACACACAAGAGTGCTGCACTGCTGCAGTGTAACAAAGAAACTATGGGGGATAAAGCTACCCTTTTGATATTGCTCCTTG TTCTTTGTCATGGTGTGGCTGTGACAATGGGGTATTGGGTAACAGAGCTTGAAGAGGGGTCTCCAAGGCCAGACAAATTG TTCATGCTACAGAAATCTAAGAGTGTGGCCAAGACTGATGCAGGGGAGATGCGAGTGCTGGAAAGCTATGGTGGCAGGGT TTCTGAGAGACGTTTGCACATTGGTTTCATCACCATGGAACCAAGATCTCTCTTTGTTCCTCAGTACCTAGACTCTAGTT TAGTCATGTTTGTACGTTCAGGTACCAACTTCTATTTTCTCAGAATCAATTCGGACGTTTCTTTTTAAAGCTGATTTTAA TTTTAGAATCAATGGTATAAAGGTTTCTAAACATACAATAGGAAAAGGATCTCTATTTTTTACCTCCATGTGTATCTAGT TTATTTATTTATAGATACCTTAGAAGTTAGAATGCCCTTTACTTTTTTGTAAAAATTAGAAATCTGGAAGTTGGGTTAAA AATTGGTTTCAGGGGAAGCAAAGGTGGCATTCATATATAAGGACAAATTAGCAGAAAGGAAATTGAAGAGAGGAGATGTG TATGAAATTCCAGCTGGTTCAGCGTTCTATTTGGTGAATACCGGGGAGAGTCAAAAACTTCACATCATTTGTAGCATTGA CCCCGCTGAGAGCTTGGGAGTAGGCATTTTCGAGGTACATGCATGATTCCGTTTTTGTATAGAACAATGTTAATTGTTAA TAATGTTAGTAAATTAGTTCATTTATCAAGGTTTGAATCCTGACTTCTTCACTCTTCATTCCCCCAACTCATATCGTCCC AGAACTCTTATCACTTAGGTTAACCCTCGGGGGCACATGCATGCATCCTTAATAACTTAGTGGTGATGTATAATTTTGAT CAATATTTTAAGATGTGAGTGCGAGCTTAGGCTCAATGGTAAAGTTATTGCCACGTGATTTTGTGGTCACAAATTTGAAC TGTATCAGGTCTCTTGCAAAAATGTAAGGTAAGGTTTTCTACATTAATATCTATAAAATGGGTCAGATTCCTCCTAGGAT CTCACGCATAACAGAAGCTTTATAGCAGTAACTTTAGTTTTATTAATATTTCAAGATCTAATGCATTTCATTGGGCTAAA TATATGTTAATGTTGCAGTCCTTCTATATTGGAGGAGGAGCTAATCCAGCATCAGTGCTTTCTGGATTTGAGCCAGAAAT CCTTGAAACTGTATTTAATGTAAGCTAACAATCTTTCATTAAATAGCACCATGGAAAACCAAATCACCAACATTCATACA CAAAACACTAACAAAGTTCTCTTGTAAATCACAGGCAACAGGACCTGAGTTGAGGAAAATCTTCACCAGGCAACATGAGG GCCCTATTGTGCATTTGGGTGATCATTCAAGTGCAACAAACATATGGAACAAGTTTCTTCAACTGAAGGAGGAAGAGAAA TTGCAGCACCTGAAGAGAATGGTGCAATGCCAAGAAGAGAGTGATGATGAAGAAGAAGAAGAGCAACAAGCAAGTTGGTC TTGGAGGAAACTCTTGGAATCTGTGCTTGGAGTTGGAGATGACAACAAGAATATTAGGGATCAAAAGTTTACCGATAAAT CTCCTCACTCTTGCAACCTTTATGACAGAAAACCAGATTTTATTAACAATTATGGTTGGAGTGTTGCTTTAGATGGCTCT GATTATTCACCACTCAAAAGCTCTGGCATTGGAATTTATCACGTCAATCTCAAAGCGGTAAGCCAGTTACAGAAGTGCTT AACATTCGTTAATACAATATTTCCACCATAGTATGGAATAGTTACACCAGATAAGAAGTAAAATTCACATAATTTAATGG ATCTAGCATGAATTTCACTCAATAGTGATAACTATGTGATAAAAATGGTGTACTAAGTAAAGTGTTTTTGGAATTCCAAG TATTCAATATGTAGGTATAATTATGAAAAGAATTTTTAATTTGAAAAGAATTATGAAAAGAAATTAAAAGCATATAAACT TGTGGTCGGTAAGTTTAAGTTTAATCTTGTATGTGGATAAAATGCAATGACAGATCTACCGCAGATTTGGATTATGTACA GTCAGGAAAATCATAAATTCATGTACTCAGTGAATGAATTCGATCATTCGGTCAACTCAAATGTTCTTTTAAAATTGGAT GGCTAACATAAACTCAAGATATGAGTCGTCCAATCTTGATCAACTCAAATTCATTGACAACGTGAATTTAGAATTCCCCA ATTATATGGAATCCAAATCCATCTAACACATCATCATCTCATGAAAGATGTATGTGTACATGAATTTGGATGCTCTACTC CCTTTGCAGCAGTAAAAGAACAAGTTCTTAAACACCTTGATACTTCAATTTTTTATTAATCACTATGAACCATTTAATGC AAGAATTAAAAGCCAAGAATTTGCACTAGAGAGCTTCAGAAGATCCATATAGTGTGTACATATACAAAAGATATGGCACA AGTTTCATTTTCATTGTGCTCACTCTATTATGGCAGGGATCAATGATGACACCCCATTTGAATCCAAGGGCAACAGAGTA TGGAGTAGTGCTGAAAGGATCTGGTAGAATCCAAATTGTGTTTCCAAACGGGAGCAATGCAATGGACACACATATCAAAG AAGGGGACGTGTTCTTTGTTCCAAGGTACTTCCCATTTTGCCAAATAGCATCACAAAGTGGATCACTAGAGTTCTTTGGG TTCACCACCTCTGCAAGGAAGAACAGGCCACAGTTTTTGGTGGGTGCAACGTCGCTTCTGAGGACCATGATGGGGCCTGA GCTTGCAACTGCATTTGGGGTGAGTGAGGAAACGATGAGGCATGTGGTTAATGCACAACAAGAGGCTGTGATACTACCCA CTCCATGGGCTGCACGTGTATACCAGAATCAGAAGAGGAGGGAGGAGGAGGAGGAGTGGATTCGAAGGAATGGATTGATT TCGGGTTATCGATATCGAGCTCCATTTTTTTATTATTGAGATAATTAGAGGAATATTTTGGGGCAGTGCTAGTGAGAATA ATCTGGTGAAACATTGAGGTTATAAGAGGGGCTAGATTTTTAGCCAATTCGACTTTTTTTTTTTGAGTTATCCTTCCTTT TCTCTTTTTTTCTTGTTTGATGTTCTATTTTTTATATTTACGGAAAGACAAGCTTGCATTAGAATAATAAAATATAATCG GAAGAATATCCGAGATGATACATGAGTGAAATAGATGGAGGAACACATTGAAACCAAGACTCATCTCCATGATCCAAAGA GAATTTTGCAAGCACATGGTGTTTTAGTTTAGATTTCTCATCTCAGTTGGTCAATTTAAACTAAGATATTTTGCAAAATG CTGATTGGAGATAGGTGAAGTAATCTGTACTGTAATCATCATCATCCCATGTAATCTCCACTAAATGAGTGAATACTTTT TTACTACATGAATAACAATGAGTTGACGCACCGCTGTTAATATCCCTATTCGGCTATTCTAATTGCTTG
CDS sequence (LotjaGi3g1v0160700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGATAAAGCTACCCTTTTGATATTGCTCCTTGTTCTTTGTCATGGTGTGGCTGTGACAATGGGGTATTGGGTAAC AGAGCTTGAAGAGGGGTCTCCAAGGCCAGACAAATTGTTCATGCTACAGAAATCTAAGAGTGTGGCCAAGACTGATGCAG GGGAGATGCGAGTGCTGGAAAGCTATGGTGGCAGGGTTTCTGAGAGACGTTTGCACATTGGTTTCATCACCATGGAACCA AGATCTCTCTTTGTTCCTCAGTACCTAGACTCTAGTTTAGTCATGTTTGTACGTTCAGGGGAAGCAAAGGTGGCATTCAT ATATAAGGACAAATTAGCAGAAAGGAAATTGAAGAGAGGAGATGTGTATGAAATTCCAGCTGGTTCAGCGTTCTATTTGG TGAATACCGGGGAGAGTCAAAAACTTCACATCATTTGTAGCATTGACCCCGCTGAGAGCTTGGGAGTAGGCATTTTCGAG TCCTTCTATATTGGAGGAGGAGCTAATCCAGCATCAGTGCTTTCTGGATTTGAGCCAGAAATCCTTGAAACTGTATTTAA TGCAACAGGACCTGAGTTGAGGAAAATCTTCACCAGGCAACATGAGGGCCCTATTGTGCATTTGGGTGATCATTCAAGTG CAACAAACATATGGAACAAGTTTCTTCAACTGAAGGAGGAAGAGAAATTGCAGCACCTGAAGAGAATGGTGCAATGCCAA GAAGAGAGTGATGATGAAGAAGAAGAAGAGCAACAAGCAAGTTGGTCTTGGAGGAAACTCTTGGAATCTGTGCTTGGAGT TGGAGATGACAACAAGAATATTAGGGATCAAAAGTTTACCGATAAATCTCCTCACTCTTGCAACCTTTATGACAGAAAAC CAGATTTTATTAACAATTATGGTTGGAGTGTTGCTTTAGATGGCTCTGATTATTCACCACTCAAAAGCTCTGGCATTGGA ATTTATCACGTCAATCTCAAAGCGGGATCAATGATGACACCCCATTTGAATCCAAGGGCAACAGAGTATGGAGTAGTGCT GAAAGGATCTGGTAGAATCCAAATTGTGTTTCCAAACGGGAGCAATGCAATGGACACACATATCAAAGAAGGGGACGTGT TCTTTGTTCCAAGGTACTTCCCATTTTGCCAAATAGCATCACAAAGTGGATCACTAGAGTTCTTTGGGTTCACCACCTCT GCAAGGAAGAACAGGCCACAGTTTTTGGTGGGTGCAACGTCGCTTCTGAGGACCATGATGGGGCCTGAGCTTGCAACTGC ATTTGGGGTGAGTGAGGAAACGATGAGGCATGTGGTTAATGCACAACAAGAGGCTGTGATACTACCCACTCCATGGGCTG CACGTGTATACCAGAATCAGAAGAGGAGGGAGGAGGAGGAGGAGTGGATTCGAAGGAATGGATTGATTTCGGGTTATCGA TATCGAGCTCCATTTTTTTATTATTGA
Protein sequence (LotjaGi3g1v0160700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDKATLLILLLVLCHGVAVTMGYWVTELEEGSPRPDKLFMLQKSKSVAKTDAGEMRVLESYGGRVSERRLHIGFITMEP RSLFVPQYLDSSLVMFVRSGEAKVAFIYKDKLAERKLKRGDVYEIPAGSAFYLVNTGESQKLHIICSIDPAESLGVGIFE SFYIGGGANPASVLSGFEPEILETVFNATGPELRKIFTRQHEGPIVHLGDHSSATNIWNKFLQLKEEEKLQHLKRMVQCQ EESDDEEEEEQQASWSWRKLLESVLGVGDDNKNIRDQKFTDKSPHSCNLYDRKPDFINNYGWSVALDGSDYSPLKSSGIG IYHVNLKAGSMMTPHLNPRATEYGVVLKGSGRIQIVFPNGSNAMDTHIKEGDVFFVPRYFPFCQIASQSGSLEFFGFTTS ARKNRPQFLVGATSLLRTMMGPELATAFGVSEETMRHVVNAQQEAVILPTPWAARVYQNQKRREEEEEWIRRNGLISGYR YRAPFFYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 453 | 453 | 1.4E-240 | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| PANTHER | 1 | 453 | 453 | 1.4E-240 | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 5 | 15 | 11 | - | – | |
| SUPERFAMILY | 5 | 446 | 442 | 2.23E-54 | ||
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 16 | 23 | 8 | - | – | |
| Phobius | 24 | 488 | 465 | - | – | |
| Gene3D | 30 | 217 | 188 | 3.4E-54 | ||
| SMART | 40 | 194 | 155 | 3.3E-17 | ||
| Pfam | 48 | 146 | 99 | 2.3E-8 | ||
| Coils | 230 | 250 | 21 | - | – | |
| Gene3D | 275 | 452 | 178 | 3.7E-46 | ||
| SMART | 287 | 436 | 150 | 1.8E-50 | ||
| Pfam | 288 | 435 | 148 | 1.0E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of LotjaGi3g1v0160700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…