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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0162000 |
| Transcript ID | LotjaGi3g1v0162000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G60580.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7; TrEMBL-Plants: tr|G7IRR0|G7IRR0_MEDTR RING/U-box protein; Found in the gene: LotjaGi3g1v0162000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22055221..22060516) extracted from Lotus japonicus Gifu genome v1.2.
TTTTAATCAGTCATAATTTATGTAAGATCCACTAAATTATATGAGTTTCCCTTCCATTTGGTGAGACTTATATGAATTTT AAAGAGAGTGAAAAAAAAATGTTAAGCAATTTTGTCATGAACATTGAACACAGAGTTAGAGTGCAAAATTTGGGACATAA ATAGTTAATGCTGAGAATCCGCGGCACAGTGAGAAAAAAGCAAGTGTATGTGGAAGTATGTGAATGATAGAAGGACAAAC AAGCTAGCTAACCCACCTTGTTTCATAAATGCTTAACTTTATCCCAATTCAAGCCTATTTCCCACTCACAACCTGAAAGG TGCCAAAATTGATGCACCAACCACATTTCTAAACATTACCAGAGCATTGTTCTCTCATCATTGCTATTAATTCTTGGTTC CAAGGACCCAAAATTTCATTTCTATGCTTTGTGGTTTAATTTCTTGCTCTGTCATAAAAAATGAGTGCTGAGAAGGAAAA ACTTGATGCAGCTTCATCCATTCATAAGGTACTACTTATAGCATGTTCGGATCAGTTTCTCTTTTCTTCGAAAATTAATT ATGAAATCCAGAAGCTAATCACAGAAGCTTCGCGCTTCGCTTCTCCTGAGAATGATTATGACTTCGAAATTAATTATATA AGGATTTCCAAACATGCCCTTACAGTGTTTGTTTCACCCTAGTCTGTATTTTATATTCTGATCTGATGGTGCTTTTTTCA TGCTCTTAGCCCAGTTTATAAAATATTGTTGTTGTTATTAATCCAATTGTGGTGTAGTTTGGTGGGTTTTGTTCTTTTTT GTTTCAAGATGACACTTGGATCAGGAGATTGCTTTTGTTGAATTAATTAGTATACTTTATAGAAGTGGAAAACAAAAAGA TTACCACTTATTTATCAGTTCCGTGATGGTATTTATAGGATGTTGATGATGATCCAATGGGGGTTACTGATGAATCTTCA GATGTTCATCACCTGAAGAACCATAATCTTCTCCTGGAAATGCCCTCCAGAATTTCAGAAGACTCTTCTTCTTCTGATTT TGTTGCAATAAGGATGCCATTGACGCCGAGTCCAACCCCTACTCATAAGAGAGTGAATTTTCTTGTGACTTCTCGCTCGG TTGATGCTCCAATGAGTAATAATAATAATAGTATTAATCCTGGGAATTCAGCATCAAGAGGCAAATCATCCATAAGAAGC ATGTTGCCAAAATTGAACTTCAAGCACCGGAGATCATCATCAGATATTGAAAAGGCTGTTTTAACTGCTGCAGCCCCAGA AGAAAGTTCCTCCTCTGGCCCTGAAGAGAAGTCTTCAATCTCAAGAACAGTGTCCCTGACTAAGATTTTTACTCCTAAGA TTAATAGAACCTCATCATTACCGGTGGAAGAAATTGGCCGCGCAAACACAGAATCTGCTCTGGGTGGATGTCTTGGTGGT TCTCCATATGTAAGATTTCAAGCAAGTAGTGCTAGTAATAAAATCTTAAAATAACTCTTTTATTTGGGTATATTTTCTTT TCATTAACAAGTAATTTAAGCATATTAGGACTCAAAATATTTGCTGGATTTCTATAATTCCTGCATATTTTTTAGCTCAA TGATTTCTTTCCCTTTTTTTGGGGTGCTATTTCTGGTTTTCAATTGCTGCTGAGTCTTGCATCATAAAATTTGCTTGCCC TTTGCTTTTCACTTATGGGATACTATTTGATTCTTTTGTAGAGAAAAGAGGGGACTATAGCTCGCACGCGTTCAGAGCCT GTGGATAACCAAGAAAAAAGCTTAAAGAAAATGGACAAGTATTACCGAATTATTCATTCCAGCCCTCGAGTTAAGGAGTG GAATGATTGGTTGACCATGTCCAAGGCAAAGGATACTGGTATTGTATTATAAGCACTTGAATAAGCAGTCATGAAAAGTA ATAAAATTTTCATCTCAAATCTCTAACAAGTAACAAGATTCCCTGGATTGACATGGTAATGAACTTATGATATGCATTGC CAAGTATTAACAGTTAAGAAAAGTATTAGCAGAATATTTGTAAGACTAGTTTCTGAATGAAGGTTGAAACGCTCTCTCAG TGTATCTTAAAAATAGCTAAGCGCGTGTTTGGAAATACTTACACAATTGATCCTAAAGCAAGAATCAATTCGGTGAGAAG CTTCAGTGAGTAGCTTCTAGATTTCAGAATTGATTCTTATAAAATAGAAGCTGATCCAAACATGTTATATGAAAGTTTTT CTTTTTTAAAAATTTTCAGCCTTTCCTTCAATGCATCTTCATTCAGCTTCTAAATCTAAAACAGTCTGTTTCTAGTTCTA TATGAAGTTATTGACTTTGAAGCCTTTCTTGGTGCAGAAAATGAAGATGATGGTGAAGATATAGCTGAAGAGGAAGCTGT GTGTAGGATATGTATGGTTGATCTATGTGAAGGAGGGGAGACGTTCAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTC TGGCTCACCAAGAATGTGCTATTAAATGGTTCAGCATCAAAGGTAACAAGACTTGTGATGTATGCAAGGAGGAGGTTCGT AACCTCCCCGTCACTCTTTTGAGGATCCAAAATGTTCAAACTCAGAATACTGGAGCAAGGTCTCAGCAGGAAGATGACTT CAGGCATGTGTTGTTATTTTCCTTTGATAAAGATCATCACTGGTTTGTGATGTATGAGTTATGACAATAAGCTTCAATTG GCTGCTAAATGGATTTCAAATAGGATTTATGGCCAACATGTTTATAGGATCATACCAAATTATGTTAATAATCATTAATT ACCATCCTCCATTCAGTTATAAATTAACCTAAATTTAGCATTTCTTTTCCCTTGTTGCCACTGCTTCTTTCAAATTAATC TGTTCAAATTCAACAGGGTTTGGCAGGAACTGCCAGTGCTTGTCATTGTCAGCATGATTGCTTATTTCTGTTTCCTTGAG CAGCTATTGGTAAGAATAGAAGTCCTCTCATTTCTATCAAAGTTACGGTTCTTTTATAGCCTCAGTTATTCAACTTCTGC AGGTTAGAAAAATGGGAACCAGAGCAATTTTCATATCTCTCCCGTTTTCCTGTGTACTAGGTCTACTCTCCTCCATGACA TCATCAACCATGGGTATGTTTTCTGAAGGCCCTTGATAAATATTTTCAAGATGCTTTATCATAGTTTGGTTGATAAATCT AAAATGTTATGGGAGAAAAAGAACATTTGGTCATTTGTGCAACAGGCTGACACACTAGCAATTGAGATATATGATTGTTG AACATGATTTACAGGAGATTGTATTGCCTAATTGATGAGTAGTTTATGACAAATATTTGGGGGGAGTTCTTATTCATAAT ATGTTTTTATTTTGGCTAATTTTGTTTGTATACTAATATATGCTAACCTGTCTTTTTTTTTTAACTTTGTTGTCCAGTGA AGAGCAGCAATTTCATTTGGATTTATGCAGCTGTCCAATTTGCTTTGGTGGTTATCTTTGCACACATATTTTACTCCTTG GTAATAGATTTTGATAAGAGCTAAATTCTTGTTACCTCAATTTTTTGCATGAAACCAAGATTGATAATATTATTTTGAGA AATGAATTGTCAAGGGGATCAACCAACCAATGAGGGTTGTATCAATTGGTAAGAAGAAGCTGTTGAGAGAAAAAAGTTGG GATCACATTCTGCTTACAATTATAAGCAAAGCCCACAGGCTTGTTAGTTTTGGTCATTAATACTAATAGAGCACTTACGA GATTTGGTACACATGAAACTCTTCTCTAAGTTTTTAGGGTAAGAGAGTTTCTTGGGAGATGCAATGGAACTTTATATTTT CCAACCTGATTCTTAAAGTGTTTTGATTCACAAGGGCCTATAATTCAAAGTACGGTAATCCCAGAAGCTATACTTTGTAG CTTCTTCATAGAAGCGGTTATGAGTTTGCTAACTGCAGAGCTAAACACACTCTAACAGAATTCTGACTTATTGATATCTA AATTCTAAGGCCAGTTCCATGCATGCTTAATTGGAAAAATGCAGGGATTTTGATGATAAGTTTTAACTAATTGCAGCCTA AGTTCTTTTGTTCTCTAACATAGAGTTTAAAACCACTTCCCTCAACTTTTGGTAGCATGACAATGTGAACCAAACTCCTA AATCAAGAATAACAAACATACTAACTTCATTCAATTACCCTGGTCAAGTGCAGGTTAGTAAGCAAGCAGTTCTAACAATT CTTCTAGCATCATTTGCTGGGTTTGGCGTGGTGATGAGTGGAAGTTCAATTCTCGCGGAGTTTGGCAGATGGAGAAGAAG ATGGCGCACTTTATCAGAGCAGCAGCATCGTTCTCAAGCGACACAAGGACAACACTCTCAAACTATAAATACCTCGCGTT CAGGCCTTCCCAACCACAGTGGAACTGTGGTATAAAATCAACAAAACTCAAATCAGAGCTGAATTGAAGTCAGTATTGCT TCTTTCATATTGTTACCAAAAGCTAAGGGATGGAACAAAACTGGTTGTCAATTTCTGTTGTGTAGAGGATGAAACTGTAG CAGAATTTTACTAGTATGCATGTACATGAGACTACATTGTACAACTACACTGTAACAGCAGAGAATAACTTTGTACTAAG CATAAAACACATCCAGGGTTTGATAGTATAGGAATTAGAGTGTCTCATTGCAATTTCACCATGCTTCCTTGCTTGCGATT CAGAAACGGCCGCATAGCTCTCACCAGAGCAAACCTAATGACAAGTTTGATTCTACGGTTAAGAGCCTCATGATCACTTC TGAGAATAAGCTACAATGTGTAGCTTCTGGAGTTACTGTGTTTTGAATTATGTACCTATCGTCAATCCAAACATGCTATA AATGGAGGGTAAAGGTGTGTTTGCATCAAAGGTTTTGAGAACATTGTGCTTTTGTTTATGATGGTTGTTTGCTTCCGTCA GATCGTGCAGGTTCAACAGTTGTAGACCTAGCCTAGTGGCATTAAATATGATGGTTATTATTTCTCTACGTTGTGGATTA TGAATTGAAGGAACACTTCTGTACTTGTACTTCAACACTAAGACAAGCATTTAGAATTAGAATTTATATGTAGGTATGAA TAGTGAAAACCGTTATCTTGTAAATACTTGGAATTCAATAGAGGAGAGTGAATGTTCGGTAGTCTGTTTGGATTGATGGT CGCCACACAATTAAAAGCATCATATAGTCAGGGGAGCTAGGATTTTGATATCACTGGAGCTAAGATCTAGGATTATACTC TCAGCGTTCCTAATTA
CDS sequence (LotjaGi3g1v0162000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGCTGAGAAGGAAAAACTTGATGCAGCTTCATCCATTCATAAGGATGTTGATGATGATCCAATGGGGGTTACTGA TGAATCTTCAGATGTTCATCACCTGAAGAACCATAATCTTCTCCTGGAAATGCCCTCCAGAATTTCAGAAGACTCTTCTT CTTCTGATTTTGTTGCAATAAGGATGCCATTGACGCCGAGTCCAACCCCTACTCATAAGAGAGTGAATTTTCTTGTGACT TCTCGCTCGGTTGATGCTCCAATGAGTAATAATAATAATAGTATTAATCCTGGGAATTCAGCATCAAGAGGCAAATCATC CATAAGAAGCATGTTGCCAAAATTGAACTTCAAGCACCGGAGATCATCATCAGATATTGAAAAGGCTGTTTTAACTGCTG CAGCCCCAGAAGAAAGTTCCTCCTCTGGCCCTGAAGAGAAGTCTTCAATCTCAAGAACAGTGTCCCTGACTAAGATTTTT ACTCCTAAGATTAATAGAACCTCATCATTACCGGTGGAAGAAATTGGCCGCGCAAACACAGAATCTGCTCTGGGTGGATG TCTTGGTGGTTCTCCATATAGAAAAGAGGGGACTATAGCTCGCACGCGTTCAGAGCCTGTGGATAACCAAGAAAAAAGCT TAAAGAAAATGGACAAGTATTACCGAATTATTCATTCCAGCCCTCGAGTTAAGGAGTGGAATGATTGGTTGACCATGTCC AAGGCAAAGGATACTGAAAATGAAGATGATGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGGATATGTATGGTTGA TCTATGTGAAGGAGGGGAGACGTTCAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTA TTAAATGGTTCAGCATCAAAGGTAACAAGACTTGTGATGTATGCAAGGAGGAGGTTCGTAACCTCCCCGTCACTCTTTTG AGGATCCAAAATGTTCAAACTCAGAATACTGGAGCAAGGTCTCAGCAGGAAGATGACTTCAGGGTTTGGCAGGAACTGCC AGTGCTTGTCATTGTCAGCATGATTGCTTATTTCTGTTTCCTTGAGCAGCTATTGGTTAGAAAAATGGGAACCAGAGCAA TTTTCATATCTCTCCCGTTTTCCTGTGTACTAGGTCTACTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGCAAT TTCATTTGGATTTATGCAGCTGTCCAATTTGCTTTGGTGGTTATCTTTGCACACATATTTTACTCCTTGGTTAGTAAGCA AGCAGTTCTAACAATTCTTCTAGCATCATTTGCTGGGTTTGGCGTGGTGATGAGTGGAAGTTCAATTCTCGCGGAGTTTG GCAGATGGAGAAGAAGATGGCGCACTTTATCAGAGCAGCAGCATCGTTCTCAAGCGACACAAGGACAACACTCTCAAACT ATAAATACCTCGCGTTCAGGCCTTCCCAACCACAGTGGAACTGTGGTATAA
Protein sequence (LotjaGi3g1v0162000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAEKEKLDAASSIHKDVDDDPMGVTDESSDVHHLKNHNLLLEMPSRISEDSSSSDFVAIRMPLTPSPTPTHKRVNFLVT SRSVDAPMSNNNNSINPGNSASRGKSSIRSMLPKLNFKHRRSSSDIEKAVLTAAAPEESSSSGPEEKSSISRTVSLTKIF TPKINRTSSLPVEEIGRANTESALGGCLGGSPYRKEGTIARTRSEPVDNQEKSLKKMDKYYRIIHSSPRVKEWNDWLTMS KAKDTENEDDGEDIAEEEAVCRICMVDLCEGGETFKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLL RIQNVQTQNTGARSQQEDDFRVWQELPVLVIVSMIAYFCFLEQLLVRKMGTRAIFISLPFSCVLGLLSSMTSSTMVKSSN FIWIYAAVQFALVVIFAHIFYSLVSKQAVLTILLASFAGFGVVMSGSSILAEFGRWRRRWRTLSEQQHRSQATQGQHSQT INTSRSGLPNHSGTVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 345 | 345 | - | – | |
| PANTHER | 13 | 477 | 465 | 3.6E-237 | – | |
| PANTHER | 13 | 477 | 465 | 3.6E-237 | – | |
| MobiDBLite | 131 | 153 | 23 | - | – | |
| MobiDBLite | 135 | 153 | 19 | - | – | |
| Gene3D | 244 | 317 | 74 | 2.7E-13 | ||
| ProSiteProfiles | 253 | 315 | 63 | 19.073 | ||
| SUPERFAMILY | 257 | 312 | 56 | 1.92E-12 | – | |
| SMART | 260 | 309 | 50 | 3.1E-18 | ||
| Pfam | 261 | 308 | 48 | 5.9E-10 | ||
| CDD | 261 | 309 | 49 | 2.6103E-14 | – | |
| TMHMM | 342 | 361 | 20 | - | – | |
| CDD | 346 | 457 | 112 | 3.25924E-4 | – | |
| Phobius | 346 | 366 | 21 | - | – | |
| Phobius | 367 | 371 | 5 | - | – | |
| Phobius | 372 | 390 | 19 | - | – | |
| TMHMM | 373 | 392 | 20 | - | – | |
| Phobius | 391 | 401 | 11 | - | – | |
| Phobius | 402 | 423 | 22 | - | – | |
| TMHMM | 402 | 424 | 23 | - | – | |
| Phobius | 424 | 428 | 5 | - | – | |
| Phobius | 429 | 451 | 23 | - | – | |
| TMHMM | 429 | 451 | 23 | - | – | |
| Phobius | 452 | 496 | 45 | - | – | |
| MobiDBLite | 467 | 496 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0162000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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