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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0162900 |
| Transcript ID | LotjaGi3g1v0162900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT2G37170.2 plasma membrane intrinsic protein 2; Swiss-Prot: sp|Q9ATM4|PIP27_MAIZE Aquaporin PIP2-7; TrEMBL-Plants: tr|A0A151RD92|A0A151RD92_CAJCA Aquaporin PIP2-7; Found in the gene: LotjaGi3g1v0162900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22126899..22130198) extracted from Lotus japonicus Gifu genome v1.2.
GGGTAGCCGCATCGTGGGGCCATGCAAGCGAAATTAAGCTAATAGGGGCGGCAAAAAAATAACGTTAATCATGTCATGTC ATTGTTCATCTATACGTACAAACCAAAACCATGTCATTACTCCATTAATTATTGATTCAATTCAATCGAATACTCTGTCT TTTCTCATCACTTTCACTCCTTAAATACTATCCTTCTCTACACTCAACTCTCAATCCACACAAAAAATCAACACTACCAA GAGCACACAACACACTCTTCTAATGGCGAAAGATATTGAGGTTACAGAGCAACCAGGGGAATACTCTGCCAAGGACTACA GTGACCCACCTCCAGTACCGTTGTTCGACCCGGAGGAGCTCACAAAGTGGTCTCTGTACAGAGCTGTCATAGCAGAGTTC GTAGCAACCCTTCTCTTCCTTTACATCACCGTGTTGACCATTATTGGCTACAAAAGACAGACTGACCTCGGTATTCCAGG GAACACTGAGTGTGATGGGGTTGGAATTTTGGGTATAGCTTGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTTACTGCA CCGCCGGTATCTCAGGTATGCTCGATCGCTACCTTTAATCGTGTGTTTGTATACCAGTTGAGTGAAACATGTAAGGATTT TCGTTCCAATTTATAGGAAAAGTTTTATTCATTTTAAATCTAATTAAATTGGTGTCAACTAATATCTAGCAAGGAAATAT GAAGTGTGTTTGATTTCTAGCTCAAAAACACTAGAATCAATTATGGTGAGCTAAAATCAATTTTCAATGAAAATATTGTT GGTTCAGAGTTATTTGGAGTATTGATTTGATACTCAAAGTTAATTCTGGCGGAAATTAGAGATAATACGTGTTTGGATAC TCATCGATTTGACCTAAATTAAATGTAACAAATGCTTATCCAAACACCTAGGTCATGTTTAACCATTGTTTTGCAATTGA TTTTAAAGTAAGAACCAATTACATGAAGAAATTTCTACAAGTAGCTATTAGACTTCAGAATTAATTTTGAAAAAAGAGAA GTTGATTCAAAATCAGCTTTCTTTTGTTTCATAATCAATTTTCTCATAACTGAGGTTTTGACTCGAAACAAGTGATGTTA GCTAGAAGAAGAGTGAACATAGTAAAAACATGAAACTTTTTTCAAAGCTTTGTGTGTGTATTTATGTATGTGGTTGTTGT ATATTGCTTACATGTTAATTTGATATTGCAGGAGGGCATATTAACCCTGCTGTGACATTTGGGCTATTCGTGGGACGCAA GGTGTCCCTGGTAAGGGCGTTACTGTACATCATTGCACAGTGCTTAGGTGCAATCTGTGGTGCTGGACTTGCTAAGGGCT TCCAAAAATCATTCTACAACAGATATGGAGGTGGGGCTAACACAATCTCAGATGGCTACAGCAAAGGCACAGCTTTGGGT GCTGAGATCATAGGAACCTTTGTTCTTGTCTACACTGTTTTCTCTGCTACTGATCCTAAGAGGAACGCTAGGGATTCCCA TGTTCCTGTAAGCATTAATTTAGCACTCTTTTTTTTTTTTGAAGATTTTGCACTGTGAAGTCAGAATCAATTCGAGGGAG AAGCTTCTGAGTTTCGGATTTGTTTCTGATGAAAAAGAAGCTGATATAATTTTTTTTGTTAATTGATGTTAGTCACTGAT ATTATATGCTTGTCTCTTTGGTGGAATTTGATATAGGTACTGGCACCACTTCCAATTGGATTTGCTGTGTTCATGGTTCA CTTGGCTACAATCCCTGTTACTGGCACTGGCATTAACCCAGCAAGGAGTTTTGGACCAGCTGTTATCTTCAACGAGGACA AAGTTTGGGATGACCAAGTAAATTCACATCCTTATTTTTATATTTAGTAAAACTTTTCCATGCCATGAGTGCTTAATTTC CTCCAATAATAATTGATCAATAACCAATTGTTTAGTGGGGAGTTACAGTGTGGATATTTTTTAAGTGGTCCACAGCTGAT TCACAATTAAAATTTACATTTTTGTAGTCAACAAAAAAAGCTGAATTAGCATGTTTGGGTGAAATTCTTAAAAGCACTTC ATACTGACAAATTTTATGAATCAATTCTGTATAAAATTACCAAACATGCACAAAAGAGTGGGCATAAGAGAGTTCACTTA CATTTAAAGGAGTTGTCACTTTCATTATAATGGACACAGCATATATAAAAATGACATTACAAATGTTAACGCACTAATTT TTTTTTGTCAGTGGGTTTATTGGGTTGGACCATTTGTTGGAGCTCTGGTTGCTGCAATCTACCACCAGTACATTCTCAGA GCAGGAGCAATCAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAATTAATCAAGATATGAGGCTGTGTTGTCAATAACAG TTTCCGTTGTCTGCTGGACCCTGCTGGAGTTTTGACCTCTTTCTCTGTGTTTTGTGGGAAAAAAGCCAAATTCCGTGGGG TCTTGAAATTGTAGATAAGCATGTGCTTATGTCTAAGTCTAAGGGTGTATTTGTATCCCTCTTGCTATTGTCCTTTTCTT ATTTTGCCCAAGTTTTCCTCTTGTGTTTGCAATTTGCATGTGATCTGGTGCACATTTTAATCAAATATTCAATCTACCTG TTTCTGCATAAGGGGTCTACATCTTATATCTGTTCCCACACCACGCTTATTCGTCCATTGTATATGTGTTCTCAATGCTT ATCATCAACCATGACTTTAGTAATTAAAGTTCCACACGTAATTGTTGATGGTGCTTTCATACACGTGAGATCATCAAGCT ATGGTAAATGAAGTAACCAATGATCCTAATAAGTAGACTTGCTCTTCAAGTATAATATTCTTCAAGTGGGGTTTTGTGGT ATTTTTGAAACGCTTGAACATACCAATTCTATGGAAGAGCACACATGAATTTTGTCGGTTCGAATAAACTAGATAAGGGA GTAGCCTTGTTGGTTCGGCTGCAAAATAAACATAGTGATGATACTCTAATTAAAGTGAGTGCTTGATGAAGAGACTTTAT TCCTCTAAGTTTTTACAATACTTGAAAGAGTTCTTAGTTAGCCACTACTGAGAAATAAAAGATGAAGCATTACTTATAAA CAACTTTTTTTTAAATGACTTATAAACAACTAAGGTGGAAGGAAAATGAGTAAGAAATCAATAAACGGCTAAAGTAAAGT ATAGATATGAACTCTAAAGATTGAAACCTAAATAAAAAACAGTGAAAAAAGGAAATAAAGTAATGAAAGAAAATCTGAAA ATTTTATAATTTGTATTGAT
CDS sequence (LotjaGi3g1v0162900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAAGATATTGAGGTTACAGAGCAACCAGGGGAATACTCTGCCAAGGACTACAGTGACCCACCTCCAGTACCGTT GTTCGACCCGGAGGAGCTCACAAAGTGGTCTCTGTACAGAGCTGTCATAGCAGAGTTCGTAGCAACCCTTCTCTTCCTTT ACATCACCGTGTTGACCATTATTGGCTACAAAAGACAGACTGACCTCGGTATTCCAGGGAACACTGAGTGTGATGGGGTT GGAATTTTGGGTATAGCTTGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTTACTGCACCGCCGGTATCTCAGGAGGGCA TATTAACCCTGCTGTGACATTTGGGCTATTCGTGGGACGCAAGGTGTCCCTGGTAAGGGCGTTACTGTACATCATTGCAC AGTGCTTAGGTGCAATCTGTGGTGCTGGACTTGCTAAGGGCTTCCAAAAATCATTCTACAACAGATATGGAGGTGGGGCT AACACAATCTCAGATGGCTACAGCAAAGGCACAGCTTTGGGTGCTGAGATCATAGGAACCTTTGTTCTTGTCTACACTGT TTTCTCTGCTACTGATCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTGTACTGGCACCACTTCCAATTGGATTTGCTG TGTTCATGGTTCACTTGGCTACAATCCCTGTTACTGGCACTGGCATTAACCCAGCAAGGAGTTTTGGACCAGCTGTTATC TTCAACGAGGACAAAGTTTGGGATGACCAATGGGTTTATTGGGTTGGACCATTTGTTGGAGCTCTGGTTGCTGCAATCTA CCACCAGTACATTCTCAGAGCAGGAGCAATCAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAA
Protein sequence (LotjaGi3g1v0162900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKDIEVTEQPGEYSAKDYSDPPPVPLFDPEELTKWSLYRAVIAEFVATLLFLYITVLTIIGYKRQTDLGIPGNTECDGV GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFVGRKVSLVRALLYIIAQCLGAICGAGLAKGFQKSFYNRYGGGA NTISDGYSKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVI FNEDKVWDDQWVYWVGPFVGALVAAIYHQYILRAGAIKALGSFRSNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 287 | 287 | 6.3E-186 | ||
| PANTHER | 1 | 287 | 287 | 6.3E-186 | – | |
| Phobius | 1 | 37 | 37 | - | – | |
| Gene3D | 25 | 287 | 263 | 5.6E-104 | ||
| SUPERFAMILY | 31 | 273 | 243 | 3.4E-68 | ||
| Pfam | 32 | 268 | 237 | 2.6E-85 | ||
| Phobius | 38 | 61 | 24 | - | – | |
| CDD | 40 | 271 | 232 | 5.25515E-81 | ||
| PRINTS | 40 | 59 | 20 | 2.9E-71 | ||
| TMHMM | 41 | 63 | 23 | - | – | |
| TIGRFAM | 44 | 267 | 224 | 2.0E-64 | ||
| Phobius | 62 | 81 | 20 | - | – | |
| Phobius | 82 | 104 | 23 | - | – | |
| TMHMM | 83 | 105 | 23 | - | – | |
| PRINTS | 89 | 113 | 25 | 2.9E-71 | ||
| Phobius | 105 | 123 | 19 | - | – | |
| ProSitePatterns | 107 | 115 | 9 | - | ||
| TMHMM | 122 | 144 | 23 | - | – | |
| Phobius | 124 | 145 | 22 | - | – | |
| PRINTS | 126 | 145 | 20 | 2.9E-71 | ||
| Phobius | 146 | 203 | 58 | - | – | |
| TMHMM | 170 | 189 | 20 | - | – | |
| PRINTS | 175 | 193 | 19 | 2.9E-71 | ||
| TMHMM | 202 | 224 | 23 | - | – | |
| Phobius | 204 | 224 | 21 | - | – | |
| PRINTS | 211 | 233 | 23 | 2.9E-71 | ||
| Phobius | 225 | 250 | 26 | - | – | |
| TMHMM | 250 | 272 | 23 | - | – | |
| PRINTS | 251 | 271 | 21 | 2.9E-71 | ||
| Phobius | 251 | 272 | 22 | - | – | |
| Phobius | 273 | 287 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0162900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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