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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0167900 |
Transcript ID | LotjaGi3g1v0167900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Myb transcription factor; TAIR: AT5G65790.1 myb domain protein 68; Swiss-Prot: sp|Q9FKL2|MYB36_ARATH Transcription factor MYB36; TrEMBL-Plants: tr|I3SFI0|I3SFI0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0167900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22927234..22929388) extracted from Lotus japonicus Gifu genome v1.2.
GTGGAACAATAGTACATACGTTTAAGTATATTATTAAAGATTGGATCACTTAAGAATAGAATGATTTTACCAAATATTTA ACTTGACTGATGGAAATAATCCTAAAATTTTATGTTTTTCATTTAAGTTTCTGCATCTCTCTTTTTCTCTCTGATGTACT TAATAAAATAACAAATATATATGCACAGTTGAAAACCGAGGTCTTCTTATTATAAGACACAAGCTAGCAAAGTCCTTACA AGAGACTAACAGAGATATCATTTCAGACTTCAGAGAGAGGGAGAGAAATGGGAAGAGCTCCTTGCTGTGATAAGGCAAAT GTGAAAAGAGGACCATGGTCACCAGAAGAAGACTCAAGGCTCAAGGAGTACATGGAGAAGCATGGAACTGGAGGAAATTG GATTGCCCTTCCACAAAAAGCTGGTAAGTAGTAAAGACAAAATCACCACATTAACATATATAGCTCTCACCATATTTCAA CCTCTTTATGATTCTATGGACTAAGTTCTTGTAACTGATCTATGATTGTAGGATTGAAGAGATGTGGAAAAAGTTGCAGA TTGAGATGGCTCAACTATCTTAGGCCCAACATTAAGCATGGAGAATTCTCAGAAGAAGAAGATACAATAATTTGCAGCCT TTATGCTAATATTGGAAGCAGGTACCATTTTATGCACCATACATACATAGCTATCCAGTCCCACACCATAGCAAATTTGT TGTACTCTTTATTATCCAGATCCAGAACATTGACATGGACATTCTTAATCTTTCCCTTTTTCCTTGATCAAGTCTAAAAG GGGCAAACAGTAAACTTCAAACTAGGGATTTCAAGTACCATTTTCAAACCTTGTCATTATCTAGATAGCTATCTCTACAT TTAGACAGCTATGTTCCACATGGATTCCATGTTTAGATCTAGCAACATCATATGTTTGCTTGATGAAGACATTTTGAATA TTTTTTTTCCCACATGACATTGTAGGTGGTCAATTATAGCTGCTCAGTTGCCAGGTAGGACTGACAATGATATCAAGAAC TACTGGAACACCAAACTCAAGAAGAAGCTCATGAGTTTCAGAAGACAACCCTACCAATCCTCTCCTCAGAACCCACCATT AATAATCCCTTCTCATTACAGAGACTTTTGCAGCTCTTACCCTGCAGCAAATAACACATCTTTCACAGGACTTGAACCAA TTTCTGTTTCTCCAAGTAATTATTTCACAAGCACAAACTGCATCAGCACAACCTCAATGTCTCTCCCTTTTTATAACCAA AACCAAGAACCCTCCTTGGTTAGTGCTTCTGCTAGTCCCATGCAATATCAGTATCACCCTATGACAGAAAATTTGTTCAT GTTTGGAAGTGAAGGAAGTTGCAGTTCATCATCTGATGGGAGTTGTAGCCAGGCTAGTCATGGAATCAAACAAGAAGAAA TAATGGGTTTTGATCAGAATCTCATGATGTACAACAAGTCCATTCTTAGTGATGTTAACCAATGTGGACAAGAAAGCCCA AATGGGTGCTTATTCCAAACTCAATCTCAGTTGGACTATGATTTGGAGGTTATTAAGCAGCTTGTTAGCAGTAGTAATAA TGGGTGTTTCAATGTTGATGAAAACAAGACAGAGGAGAAGGCTATGGCTACTATGGCTATGTATAACTACGACAACTGAG TGTAAGTAACTGAGCACACTGACTGGAGGTAAAATCAGAAAGATATGTTTCAGTGAGTGGCATGGTAGTGGGGGAGATTC ATTAGATTCAGAAGAAAAGACTAGTTTGTGCTCCTTCTGATTCTGGGGTTCAGTGTTCTTTCATGAAATTAGACTTTTCT TGTTTTGACAGTACATTGTAGTAAAAGCTTTTGTTTTGTTTATATTTTTGTGAAGTACTACTAGTAATGATTATGATGAT GTTAGATTTTAACAAGCAATCTCTCCACCAATCAGATTACTGTTTTGCTAATCAATGTCTGAAAATTAGAGAATATTTTT TTATACAATATATTATCAATTATCAAATAGTCAATTCTGTTCGAGTTCAAGAAGGATGCAATTATTATGAAAGATAAATT TCTCTCCAATAAGTCATGTTTTGAATTTAAAATTTATAGTTATTTATTAATTAGATATATTCATTTTTAATCAGT
CDS sequence (LotjaGi3g1v0167900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGAGCTCCTTGCTGTGATAAGGCAAATGTGAAAAGAGGACCATGGTCACCAGAAGAAGACTCAAGGCTCAAGGA GTACATGGAGAAGCATGGAACTGGAGGAAATTGGATTGCCCTTCCACAAAAAGCTGGATTGAAGAGATGTGGAAAAAGTT GCAGATTGAGATGGCTCAACTATCTTAGGCCCAACATTAAGCATGGAGAATTCTCAGAAGAAGAAGATACAATAATTTGC AGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTGCCAGGTAGGACTGACAATGATATCAAGAA CTACTGGAACACCAAACTCAAGAAGAAGCTCATGAGTTTCAGAAGACAACCCTACCAATCCTCTCCTCAGAACCCACCAT TAATAATCCCTTCTCATTACAGAGACTTTTGCAGCTCTTACCCTGCAGCAAATAACACATCTTTCACAGGACTTGAACCA ATTTCTGTTTCTCCAAGTAATTATTTCACAAGCACAAACTGCATCAGCACAACCTCAATGTCTCTCCCTTTTTATAACCA AAACCAAGAACCCTCCTTGGTTAGTGCTTCTGCTAGTCCCATGCAATATCAGTATCACCCTATGACAGAAAATTTGTTCA TGTTTGGAAGTGAAGGAAGTTGCAGTTCATCATCTGATGGGAGTTGTAGCCAGGCTAGTCATGGAATCAAACAAGAAGAA ATAATGGGTTTTGATCAGAATCTCATGATGTACAACAAGTCCATTCTTAGTGATGTTAACCAATGTGGACAAGAAAGCCC AAATGGGTGCTTATTCCAAACTCAATCTCAGTTGGACTATGATTTGGAGGTTATTAAGCAGCTTGTTAGCAGTAGTAATA ATGGGTGTTTCAATGTTGATGAAAACAAGACAGAGGAGAAGGCTATGGCTACTATGGCTATGTATAACTACGACAACTGA
Protein sequence (LotjaGi3g1v0167900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRAPCCDKANVKRGPWSPEEDSRLKEYMEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSEEEDTIIC SLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMSFRRQPYQSSPQNPPLIIPSHYRDFCSSYPAANNTSFTGLEP ISVSPSNYFTSTNCISTTSMSLPFYNQNQEPSLVSASASPMQYQYHPMTENLFMFGSEGSCSSSSDGSCSQASHGIKQEE IMGFDQNLMMYNKSILSDVNQCGQESPNGCLFQTQSQLDYDLEVIKQLVSSSNNGCFNVDENKTEEKAMATMAMYNYDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 308 | 308 | 4.6E-94 | – | |
PANTHER | 1 | 308 | 308 | 4.6E-94 | ||
Gene3D | 7 | 68 | 62 | 1.9E-19 | – | |
ProSiteProfiles | 9 | 62 | 54 | 14.124 | ||
SUPERFAMILY | 11 | 109 | 99 | 2.24E-27 | ||
SMART | 13 | 64 | 52 | 8.7E-12 | ||
Pfam | 14 | 62 | 49 | 2.2E-14 | ||
CDD | 16 | 62 | 47 | 2.19033E-9 | ||
ProSiteProfiles | 63 | 117 | 55 | 22.042 | ||
SMART | 67 | 115 | 49 | 1.0E-11 | ||
Pfam | 69 | 111 | 43 | 5.7E-11 | ||
CDD | 70 | 113 | 44 | 9.405E-9 | ||
Gene3D | 70 | 132 | 63 | 9.5E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0167900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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