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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0177500 |
| Transcript ID | LotjaGi3g1v0177500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rho GTPase-activating protein; TAIR: AT5G22400.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q9FMR1|RGAP1_ARATH Rho GTPase-activating protein 1; TrEMBL-Plants: tr|G7ITU3|G7ITU3_MEDTR PAK-box/P21-Rho-binding domain Rho GTPase activating protein; Found in the gene: LotjaGi3g1v0177500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24658931..24665968) extracted from Lotus japonicus Gifu genome v1.2.
CCAGAATCAAGAAACTGTTACAAGATCCTTAATTTTATTTTTTTTAAAGTTCAATATATATTGATGAATGAAAAGGTCAG AGACCTGTACAATAGGAACCAAAAGACAACACATGAGAAAACAAGATGAAGATTCTAAAAAACAAACAATAGGAACAGGC TCCTAAAGATACAATACGAGTACTAACAGTGGCTTTCATAGCCTACAAAGCAAGGAAATAGCTAATAAAAATCAAGGGGA AGAGCCACAAAATGGCTAACATAAAAGATCCTTAATTTTTGTCCTCCAAATCCCTAACTAGAACCACCACAGCCTTCATC TTCTCCGTCGCTTCTCCCTCACGAGAAATTGGTCCTTGCCACAAAAACCACAAAAGCTCCAACCTAAACTCAAATCCATC TCCATCGCACCCTTCTTTGCGTAACCAAGCCCCAGACTCACTAAGACTGAAACACAGACGATGGAGAAGATGAAGAAGCG AGACCAGATACACTACCACTCACATCCAGATTTCTCCACCACTGCTCCTCGTCGTTGAGAACCGGATCGGAGCCGTACAA CCACCGTCGGACCAGATCTGGCACTCTCCCCTTCGATTCACACCAGATCTGCAACTCTTCACTTCGACCCACTCCTCTGC AACGTTAAGCTTTGGTTAGGGGAAACAAGGAGAAATAAAAATTAAAAAACAAAAAGAGAGAAGGAAAAGGAGAAATTCAC CTTGATGTTTTCTTCTTGGTAGTGCTACTGCTGCTGATGGTGCCTGTGCTGCTGGAGATGGTTGAAGTGAGAGGAGGAGA GAGTGGGAGGGAGAAGAAGGAGAAGGGGAAAAGTCTAAAATATCCCGAATGCAAAGTCTGAAATGTCCCTGGTCCACCGG TGGACCAAAAAGAAAGTTCCCCACCCTAGTGGGCACCATTACTTTTTCTGGTACATAGATACATCATTACTTTATATTTA AACTTTTTTAACATGGCTCGTTTCAAAAATAATAAACAAAAAAAACAAAACAGAAACAGAGCTGGGTAGTTACTAGTTAC AAAGCTTCCACCCTCTTCACTCTTCATTTCATCTTCACCACTTTCTACTCTTCCTCTTTCCCTGTCTGTTAATGTTGATG TTGGTGTGTCTCTCTCTCTGACACTGTCACAAGAAAGAGAGAGAGAAAACAAACACTACTCAAGCAGCGTCATTTGCTTG TTCAACGCTCCACAACACTCAACAACAACAACAACAACATATTTAATACTAAAAAAGTTCAGTTAATGATTCTCACGTCC CACATTCTCTCAACACAACTTTCCCTTCAATCCAACTCCAACTCCAAAACCCATTCTTCAAATTGCCAAATCAAGCTTTC TTAAATCACAAAAATCATATATTTGTAGTGCTTTTGGTTTTTTATATTCTAAGTAAAGGCCTTTTTCATTGCCACCAATG ACCCAGGTCCTTCATTTTGCTTCTTCTTCACCAACAACCTCTTCCTCTCCCTCTCCCTTCTCTTCTTCCCACGCCATTTT TGCAATTCTTGTCACCCTTTTCAGGAAATCATTTGTTGCTGCTTTCAAGAGTGGCAGGAAACACCTCTGTGCTATGGACA TAGGGTCCCCTACTAACGTGCGCCATGTTACTCATGTCACATTTGATAGGTTCAATGGCTTCTTGGGTTTGCCTGTTGAG TTTGAACCTGATGTGCCCAGAAGGCCTCCCAGTGCTAGGTACGCTGCTTCTTCACCTTCCATGTGCCATTGTTTGGGTTG AATTGTAGTTACATTACTAAGGGCGCGTTTGAGTAAATAGTTTAATTAAGCGCTTATCACATAAACGTTTATTCATAGGC TAATTTGAGAAGCTTATTGAAAGAAGCTTAAAATAGGTTATAGATAGGTATAAACGCTTATCCATAAGCTAATCTGAGTA AGTTATGAAAATCTATAGGCAGGTCATAGGCTGTCTCAAACACTTGCATAAGCGCTTATGGTATAAGATAAGCTCAAATA AATACTTCCAAACAGGGCCTAAATGCATGTTTCATTTTGAGAGAAAAATAGATTATTTCTTTTTAAAGCTCCCTATGTTT TTTATTATAAGCTGTTTTTTTTAAGTATGCTAAGCACAAAACATAAGCTTATTTTCTTTAGATGCCGCCTTCAATTTTTG ATTTAGTTATTTTCACTAATTTTATATGTAATTTTTGCTTTAATTTGGTTTTTTGTTCCCTTGTTTGATTTTCACATGTA GTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCTTATGACTCAAGAGGGAACAGTGTGCCAACAATTCTG CTGCTAATGCAAAGGCATCTGTATGCTCAAGGAGGACTGCAGGTTGGTTGGTTTGCATTAAAGAAGAAAGAAAGATAGTT CTTCTTTATATAAGTCACAACACTATGGGGACTTGTTCTTCTTACAAATGACCAATTTAATGGTCATGCTTAAGTAAAAA GTTCAATTTGCACATGCAGGTGGAGGGGATTTTCAGAATTAATCCAGACAATAGTCAAGAAGAAAATGTCAGGGATCAAT TGAACATGGGATTAATCCCAGAAGGTATTGATGTACATTGTTTGGCAGGACTAATTAAGGTATGACTTTGCAACATGATT GCCTCTGTTTCCTCTGTTCCTGTATTATGCTTGTTTAGGGGATTGATCTGAATGATCATGTAAAAAGAAGTCTCTTTAAT GATATGATACTGGTGAATAGTTTTGCTTGCAGATTTTGATTTCTAAAACTTTTTTTCCAAAAAGGGCAACTGTTATCTTT TCCAAAAAAAGTTATAGGTCTAACAAATACTTATCATTTTCAAACAGTTATCTGTCAAGCCTAATAAATGAGACGAATAC ACATCATTTTCAAAGTGTATTGGACTGAAAGTGCGACATTGCATATCCAGTTTGTTATAAATAACGGATAATGGATTAAA TGAATCATACTAGCCATGCAATATTTGAGCTGTTAAACTGGGCTTCTGAAATATCCTCTGGTTATTGAGAGTTTATTATC ACTCATTCACTCCTATATTTTTATTTTGACTCTTATCTAACTATCTTTTTCCGAATTTCCCTAAAATATCCTTTATTAAA TAGTAAGTCAGACAAGTGTTCTCTTGCCACTCCTATACTTGTCCAAATTTCTAATTAGCCATTGCAACAATTTGTAAAAT GCTACAAATCACTTACTACTATTTGATCTGAAAAGTACATTACTTGTGTTTTGCATCTGTAAGTTTTATGATCCTGTTGG AAACAGATCTTATGATCCTATTGTTCTACTATTTATTTATCAAAAACTTGCATCTTTAAAATGATTCAGTTAAAACAATT CTATCTTTTCTTTTTTCATTGCGCTTACTAGACAGCTCAGACAGAACCTGATAGTTGTATTCCCTTTTCACTTTCCCTGT ATCATATGCTGGTCAAATGCATCCATATTTACCTCTGCTGCTGTCTTAACCCTCCAGCTTATTTACTCCCAGCCTAAAAC TCATGTCTTCAGGAAGGAAAATGATTATGAAACGAAATTTCATTTCAGTTACCACCCGAATCTGATTGCTCAATACCACA CTATTTGGACCCTACCATTGAATGGTAATCAGTACCCACGTTACTATTCGTCAAGTCTATGTTAATATTCGTCCTGTTCA TGCAGCCATTTCTTCGCTCCATATAGCACTTCTCCTTGAGTAAATACTCATATTTCCAATCCAACATCTTAGTTCAAGTG CTGCTGTTCATGAACCTACAGCACTACTTAGCTGGAAATGTCTCCTCTTTTCGTATAGTTTTGTCCAAGCATGTAACCAT CAGAACCCATTCCCATTTCATTACACTAGTAGCAAACCGTCATATTCATGAAGGGATGCAGCAAGGTAAATGCTAGGAGA AACTATTTCTATGGCTTCTACTTACATTTTCTTATTTGTTTGTGATTTTGTTTTGGCAAGAAGGGGAGGTTTTATGTATT GTATACACTATATGATAATTTAGTTTGACATTCTTGTACTTTTCAAGGCTTGGTTTAGGGAGCTTCCTACAGGAATTCTG GATTCATTATCGCCAGAGCAGGTAATGCAATGCGAAACTGAGGAAGAATGTGTTGAGCTAGCAAGGAATCTACCTCACAC TGAAGCTGCACTCTTGGACTGGGCCATCAATCTGATGGCTGATGTTGTCCAACAGGAACATGTTAATAAGATGAATGCGC GTAACATTGCCATGGTTTTTGCACCAAATATGACTCAGGTGTGTTCCAATAACTCAATTCTCAAGTTATTGCAGGGAAGA GAATGTGCTATTTTATCTTTGTACTTTATTAAATTGCATATGAACATCTTGTAAATGTAATTGAAGTTGTGATGAACCAA TTGGTAAATGGCACATGAATGATTATAAGTTATATTTCTAACACGCCCCATCACGCAAGAGCCTTCTTGGGCTTGAACCC TGAACAATGTACAGGTCCACCTACCACGTGCTGAAATTCAACTTTTTATTAGAGTAATGAGGGAACCTAGGACCGAACTA TAAACCACTTGGTCATAGAGGCTATGATACCATGTCATGAACCAATTATCCCAAAAGCTTAAGCTTTAGGGCAAAGGACA CATGGATGGTTATTCTATATTATATTCCTAACATAAGTTTTCTTCTATATGAAAGTATTTTCTGCACTTTTGGATCATGG TTCTTTTGACTATTCTTTTTACCTTTAGCATGTTTGGGTAGCTTGTTTTTCCTCAATCAAATTTGGCACCCATAAATTGC TCACAGAAGCTCATCTTGAGAATAGATTTTAACTTTATAATCAATTGTAGAAAGATTTCCAAGCATGTACTAAGTTCATG AGAGTTTTTGGTCTTTCTGGTTGCAGATGGCAGACCCTTTCACTGCATTGATGTATGCAGTTCAAGTGATGAATTTCTTG AAGTCACTTATATTAAGGACACTGCAGGAAAGAAAGGATTCTGTGGTAGAATCTCATCCTAAATTATATCCAGGACCATC TGATGAGAATGGTAACCGTACACTTTTGGAGTCTTGCCAGCAAGATACTATGGCAGAAAATGAAGAGGCTGAAGAAACAG TCGTATCCGAGAAAACTGTCGTAGAATGTTCCCCTGAACCACTCCAAAATAACACCTCAACTGGAGGAGAATCTGACAGT TTGGTAAGCTCTTCTGAGAATACAATTTGCAATGAGGACTTGTATTGCGAGTTTCCACCCAAAGGAAACATGGGAAAGGG TAAGCCTGCACAATCTAGTAGCTCAAATGCTAGAAAAGGGACCAAAAAGACCCGAGGCAAGCAACCTGTGGTTGATCAAA CAGTGCCAGCTGAGAAAAGGGGAATGAGGAGTGCGAGCAACACAGATTCAAGATATGAAAGAGTTGAAGCCTGGCGGTGA AAGAAGCACTGAAGTGTAAATGGATTATTTGACATCATCATGGCCTTGTAAGTTTGTGAAGTGATTCCTGTATGTTCTCT TCATTTTCTGGGTTTTAATTAAATTATATGCTTTCAAGAATATCACTATGATCATACCAACATTGTAATGAAATTTCATT TCCTCAGTGTTCACTTATGTTCATAATTATTCCTTAACAATAAACTCATTCATTATTGCACTTCTGAATTTCTGATCCTT ACTAATTTGGTTTCCTGCCAGTGTATAAATTTGCATAATCTTACATAGCAAATATGGTAGTATGATATGCTACATGCTTA AGTGGATTTATTTTCATGGGCCATGATAGTGAAAATAAAACCTGACAAACTTTCATTAAGGAAATTTGTAGGATTGATTT GGAAGGCGTCAGGTCCTCAAAGAGAGGGGGAAATCTAAATACTCCTGTCTTATGTACTCTTTCTATCTAAACAATAGCAT ATATTCCATGAATAACTAGTTTTCTAATTTAGAATAGAAGAAAACTGACTGCTTGTGAGAGAAGAAACACTGGATTTTCG GTAGTCCAGGAGATCAGGAAATTTGCTCGGGAGAGACCACGCCATGACATTTTTATGGTGGTGGGAAATATCATGAGGAA GAAGAACCACTGAACTATGAAACTTCAAAGTCAAGGAAATCTCTGCATGCTACTTTCTCACCAAAACGTGTCTACGGGTT AAAGTGTGTAATGTGTTCCAACTGATATATTTGGCTTTTCGATTAGACATGTACCAGTACAACTATCCATTGTCACAATT TGTGGGAATGGTTTTACTGATAAGGAAAACTGCTACAATGATAAATGTTCCTTGAGAAGAAATGTTGGCCATGTGATTTC AGCAGCAATGTTAGCCATGACTCTATATTCGGCTTCAGTGCTAGAGCGAGAGACCGTGGGTTGTTTCTTGTCATACATTA TATTTCCACCCATGACTACATCGTGGATGTTTTCACTAAACCCATGTTGAAAGCAACTCTCAGTTACTTCCCAGGACAAA CTTGCAGAAAATTAAGAGCAGCAAAATCAAATAAATTAGTGCTCAAACTAATTACAAAATTACAAATATTTGTGGTCAGC AAATCAAATAAGTGGAGGCTCGACCAATGCCACAATTATAACAACCATAAATTGTTTACCAAATATAGGATTTTACCGTT GCTTTGTATTTATGTTTGCATCTATTATTTATGGTGCTGCTGCACCTCAATGTAATAGCACAAGAAAATCAAAAGCAACC AAAACAAAAAAGGTGTCCAATTGTTCATGTTCAAACCATCAGAATTATCTGTACCTTTCCCTTCTCTGTCTTTTCTTCTT TCTCAAGACAGTTTTTCCAACTTAGCAAAGTTGTTCATTGAAAACAAGCATATTCATACCCAATATAATGGATAAACAAA CACACTGAGATGTATGCAATATTACTATGTTAGGATAAGGCAGTGGAAGTGAGAACAGACCATTTTCCTAGAAAGGAGGG ACTATATATAAAGGATTGAACCAAATATTCCTCCAGAAATGGTAATCACAAACGCTAGTGGTAGAACTAAATAGGCAC
CDS sequence (LotjaGi3g1v0177500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCCAGGTCCTTCATTTTGCTTCTTCTTCACCAACAACCTCTTCCTCTCCCTCTCCCTTCTCTTCTTCCCACGCCAT TTTTGCAATTCTTGTCACCCTTTTCAGGAAATCATTTGTTGCTGCTTTCAAGAGTGGCAGGAAACACCTCTGTGCTATGG ACATAGGGTCCCCTACTAACGTGCGCCATGTTACTCATGTCACATTTGATAGGTTCAATGGCTTCTTGGGTTTGCCTGTT GAGTTTGAACCTGATGTGCCCAGAAGGCCTCCCAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTT ATCTTATGACTCAAGAGGGAACAGTGTGCCAACAATTCTGCTGCTAATGCAAAGGCATCTGTATGCTCAAGGAGGACTGC AGGTGGAGGGGATTTTCAGAATTAATCCAGACAATAGTCAAGAAGAAAATGTCAGGGATCAATTGAACATGGGATTAATC CCAGAAGGTATTGATGTACATTGTTTGGCAGGACTAATTAAGGCTTGGTTTAGGGAGCTTCCTACAGGAATTCTGGATTC ATTATCGCCAGAGCAGGTAATGCAATGCGAAACTGAGGAAGAATGTGTTGAGCTAGCAAGGAATCTACCTCACACTGAAG CTGCACTCTTGGACTGGGCCATCAATCTGATGGCTGATGTTGTCCAACAGGAACATGTTAATAAGATGAATGCGCGTAAC ATTGCCATGGTTTTTGCACCAAATATGACTCAGATGGCAGACCCTTTCACTGCATTGATGTATGCAGTTCAAGTGATGAA TTTCTTGAAGTCACTTATATTAAGGACACTGCAGGAAAGAAAGGATTCTGTGGTAGAATCTCATCCTAAATTATATCCAG GACCATCTGATGAGAATGGTAACCGTACACTTTTGGAGTCTTGCCAGCAAGATACTATGGCAGAAAATGAAGAGGCTGAA GAAACAGTCGTATCCGAGAAAACTGTCGTAGAATGTTCCCCTGAACCACTCCAAAATAACACCTCAACTGGAGGAGAATC TGACAGTTTGGTAAGCTCTTCTGAGAATACAATTTGCAATGAGGACTTGTATTGCGAGTTTCCACCCAAAGGAAACATGG GAAAGGGTAAGCCTGCACAATCTAGTAGCTCAAATGCTAGAAAAGGGACCAAAAAGACCCGAGGCAAGCAACCTGTGGTT GATCAAACAGTGCCAGCTGAGAAAAGGGGAATGAGGAGTGCGAGCAACACAGATTCAAGATATGAAAGAGTTGAAGCCTG GCGGTGA
Protein sequence (LotjaGi3g1v0177500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTQVLHFASSSPTTSSSPSPFSSSHAIFAILVTLFRKSFVAAFKSGRKHLCAMDIGSPTNVRHVTHVTFDRFNGFLGLPV EFEPDVPRRPPSASATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYAQGGLQVEGIFRINPDNSQEENVRDQLNMGLI PEGIDVHCLAGLIKAWFRELPTGILDSLSPEQVMQCETEEECVELARNLPHTEAALLDWAINLMADVVQQEHVNKMNARN IAMVFAPNMTQMADPFTALMYAVQVMNFLKSLILRTLQERKDSVVESHPKLYPGPSDENGNRTLLESCQQDTMAENEEAE ETVVSEKTVVECSPEPLQNNTSTGGESDSLVSSSENTICNEDLYCEFPPKGNMGKGKPAQSSSSNARKGTKKTRGKQPVV DQTVPAEKRGMRSASNTDSRYERVEAWR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 26 | 360 | 335 | 6.6E-187 | – | |
| PANTHER | 26 | 360 | 335 | 6.6E-187 | – | |
| Gene3D | 52 | 84 | 33 | 2.8E-7 | ||
| Pfam | 54 | 81 | 28 | 9.0E-6 | ||
| SMART | 55 | 89 | 35 | 5.6E-7 | ||
| ProSiteProfiles | 55 | 68 | 14 | 8.113 | ||
| Gene3D | 85 | 291 | 207 | 1.6E-35 | ||
| SUPERFAMILY | 95 | 274 | 180 | 4.71E-38 | ||
| ProSiteProfiles | 100 | 285 | 186 | 26.392 | ||
| SMART | 114 | 277 | 164 | 1.6E-33 | ||
| Pfam | 117 | 251 | 135 | 2.4E-21 | ||
| CDD | 117 | 273 | 157 | 7.97444E-35 | – | |
| MobiDBLite | 284 | 303 | 20 | - | – | |
| MobiDBLite | 322 | 353 | 32 | - | – | |
| MobiDBLite | 332 | 353 | 22 | - | – | |
| MobiDBLite | 369 | 428 | 60 | - | – | |
| MobiDBLite | 413 | 428 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi3g1v0177500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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