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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0177800 |
| Transcript ID | LotjaGi3g1v0177800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Germin-like protein; TAIR: AT1G09560.1 germin-like protein 5; Swiss-Prot: sp|Q652P9|GL93_ORYSJ Germin-like protein 9-3; TrEMBL-Plants: tr|I1LTW9|I1LTW9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0177800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24687790..24689038) extracted from Lotus japonicus Gifu genome v1.2.
GGCCTGTAAATATCTCCTAAAAATTTTTTAAAGCCTCCTTGAAATCTCCAACCTCAGAGAACCCTCATACATATAAATAA AGCATTGTCAAAATCTCTCAATCACAACATCATCCAAATCCCAAACATTTTCAAAGAAATCTTCATCTCTAGTCTCTACC ACACCATGTATTCTACTACTTCTTCCCTCAAGTTCCTCTCATTGCTCATCTTTGCATTTGCCATTGTGCAAATAACAAGA GCTGGTGACCCTGACATTCTGTCAGACTTCATAGTCCCTCCAAATGTGATACCAGATGGAAACTTCTTCACCAACACAAA CTTCCGTGTCATTGTTCCACCAAACCAACCACCATCAACTTTCAAAGTTCTGAAGGCAAGCAAAGCAGAGTTTCCAGCAC TAGATGGACAGAGTGTCTCATATGCTGTTCTTCAATTCCCAGGTCGGCTGAGGAGCAAGCGTATCTAGGATTTTTTTCAT TGGGGATTCTAAATAAAATTATAAAAAATCTATAAATTTTTAGGAGGGCTAGACTAAAAAAAATTTGATATAAAAACACA TAATCAACAAATAAATTAAAATTCTTTGGGAAGCCGTGACCCTAGCCTTTTATAAAATCCTTAGATAGAATAGTATATAA ATTTTGCTTATTGTGTTATATTTTAACATGCTTACATTTTTTTTTTTGGTTTTATCCTTGCAGCTGGGAGCATCAACCCG CCACACACTCATCCTCGCTCCGCCGAGCTTCTCTTAGTTGCTGGCGGTTCCCTTCAAGTAGGGTTTGTGGACACTACCAA TAAACTCTTCACTCAGAACCTTCAAGCTGGGGACATGTTCATATTCCCAAAGGGACTTGTGCACTTTCAACACAATGCTG ATGCTAACAACCCTGCTATGGCTATATCTGCATTTGGAAGTGCCAGTGCTGGGACTGTGGTAATTCCTAGCACCTTGTTT AACACCACCATTGACGACAATGTCTTGGCTTTGGCATTCAAGACTAATGTTTCTACCATTCAAGCTTTGAAGAAAGGATT TGCTCCTTAAAAGCCTCAAGGTTTCTTAATGCATCTGTTGGTATCTGATTTGTTTCTTCTTGTTTTCTCTGTTTTGTAAT TTTCATTCAATTGTGTTCCATACATCCAAAATAAGCTTGTTGTAGCATCCAAAAGCAGTGGCACATTTTATGGGCCTAAA GCTTGGAGATAAATAAGTTGTTTTGATTTATGCTTCATCAGTTCATTGT
CDS sequence (LotjaGi3g1v0177800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTCTACTACTTCTTCCCTCAAGTTCCTCTCATTGCTCATCTTTGCATTTGCCATTGTGCAAATAACAAGAGCTGG TGACCCTGACATTCTGTCAGACTTCATAGTCCCTCCAAATGTGATACCAGATGGAAACTTCTTCACCAACACAAACTTCC GTGTCATTGTTCCACCAAACCAACCACCATCAACTTTCAAAGTTCTGAAGGCAAGCAAAGCAGAGTTTCCAGCACTAGAT GGACAGAGTGTCTCATATGCTGTTCTTCAATTCCCAGCTGGGAGCATCAACCCGCCACACACTCATCCTCGCTCCGCCGA GCTTCTCTTAGTTGCTGGCGGTTCCCTTCAAGTAGGGTTTGTGGACACTACCAATAAACTCTTCACTCAGAACCTTCAAG CTGGGGACATGTTCATATTCCCAAAGGGACTTGTGCACTTTCAACACAATGCTGATGCTAACAACCCTGCTATGGCTATA TCTGCATTTGGAAGTGCCAGTGCTGGGACTGTGGTAATTCCTAGCACCTTGTTTAACACCACCATTGACGACAATGTCTT GGCTTTGGCATTCAAGACTAATGTTTCTACCATTCAAGCTTTGAAGAAAGGATTTGCTCCTTAA
Protein sequence (LotjaGi3g1v0177800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYSTTSSLKFLSLLIFAFAIVQITRAGDPDILSDFIVPPNVIPDGNFFTNTNFRVIVPPNQPPSTFKVLKASKAEFPALD GQSVSYAVLQFPAGSINPPHTHPRSAELLLVAGGSLQVGFVDTTNKLFTQNLQAGDMFIFPKGLVHFQHNADANNPAMAI SAFGSASAGTVVIPSTLFNTTIDDNVLALAFKTNVSTIQALKKGFAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| PANTHER | 9 | 204 | 196 | 5.7E-101 | – | |
| PANTHER | 9 | 204 | 196 | 5.7E-101 | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Gene3D | 27 | 207 | 181 | 5.4E-52 | ||
| Phobius | 27 | 207 | 181 | - | – | |
| SMART | 66 | 199 | 134 | 8.9E-36 | ||
| Pfam | 70 | 197 | 128 | 4.9E-29 | ||
| SUPERFAMILY | 71 | 205 | 135 | 8.11E-31 | ||
| PRINTS | 100 | 120 | 21 | 2.5E-20 | ||
| PRINTS | 130 | 150 | 21 | 2.5E-20 | ||
| PRINTS | 164 | 179 | 16 | 2.5E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. | ||
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of LotjaGi3g1v0177800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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