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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0178600 |
| Transcript ID | LotjaGi3g1v0178600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A151S8F0|A0A151S8F0_CAJCA F-box/kelch-repeat protein family; Found in the gene: LotjaGi3g1v0178600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24872096..24875882) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAACTCAATCATCATTATTAGGTTTATTAGGGGTAGTCGTGGCTCCTTTATGTCTACTCAAAGGTCTGCCACTGAAT GTTATACGCCACAATAAATATATACCACAACTTTATAAGTTATAATATATATAGTTTGAAGCTGACCTTCATCAAATGAA ATATGTTCTTCGAAGATGGTGGTGAAGCGCCGATGGGCTTCGATAGAGATGAAGAACAGTAAGGAAGATGATCAAAATTA ACGAGGAAGAGATGAAGAAGGGATGGCGAAAGAATTGTTTTCATGGTGGTGTTGTGAGGAGTATTTTTAGAAAAAATGAA AGAGATGAGTAGTGAGCATAGATGTGTGGATGATATTTTTAGTTCCCCCCTAAATCTTATAGACTACACTTTCTACCCAA AAAAAAAAAAAGAAATAGACTTTATTAGTATGAATCGAGAAAGTGAGTGTGAAGATATTATATATGTGTAAAGAGAAACA TATATGTATAATTTTCTTGCTTGTAGATCCTCTTTCTCATTGTATATTGTATGCGATTGAAGCTAGGTTAAAACAAACAG CATCGAAGAGAAGACACAGACACAGGTTGAAGCGAGCGAGCGAGCAAAGGAAACCATGATGAAGAGGAGGCAGAGGCAAC CATCTTCACGACGTCGTTTGCTGGTTTTACCGGAGGAGATGATTTCCGAGGTTCTTTCTAGGGTTCCGGTGAGGCCCCTT CTGCGATTCAGGTGCGTCTGCAAATCATGGAAAACCCTAATTTCCAGTCCCCAATTCGTGAAGAACTACTCTCGCATCTC AACCGACCAACGATTGGCCTGTATGACTCACACTGATTGGAGAAAAATAACAACATGTTCTTTGCAGTCATTGTGCGAAA GTTCTTTGCAGTCATTGTGCGAAATCCAAAACAACAAACTAATAGCCCCTTCGGAAATCTCTAGCTTCAGGGTGGAACGC AGGTATGGTCTTATTTTAGGGTCATGCAATGGGTTGCTGTGTTTGCTTGATGGTACAGGTTTTTTCAAAATGTGGAACCC GTTTACCAGATTGACATCCAAGAGATCGCCACCGCTTAGTGTCATGAGTCTGCAAATCACAATGTCAATGACAATGTATG GTTTCGGTTATGATCAGCTTCACAACAAGTACAAAGTGCTAATTATTTTAGAAGATGGCATCACCAAACTTCATACATTT GGTACTAAAACTAAATCTTGGACAATAATTCAGTTCTTACCGCCGTGTGAGCCGCCGGTGCATTTGGGGGATAGAATGGG TAAATTTGTGACTAGTACTGGTACGCTTAATTGGTTGGTTCGAGAAAGAGATTGAATTATTTCCTTTAATCTGGAGACGG AGACTTATGGTCAAGTATTGCTCCCTCTTGCTCACCATGTGGATGGTGACCTCCCCAACAATATTGAAGTCTTGAACAAT TGTCTTTGTTTGTGTTACTTAAATGATATGCATTGTGTTCTGTGGTCCATGAATATGTATGGCATTCAAGAGTCTTGGTC TAAATTGATTTCGATCCCTCGTTGCAAGATTCCAGGGCCCATTGGTGCTTTTCTTCACATTCGCCCCTTGTGCATTTCAG AAAATGGCCTAGTTTTGATGGAGGTGGATTCTGATCATTTCAAATTACAATTAGTCATGTATAACGCAGTGAATGGCAAG TTGGATTATCCTGAGATCATGAGCCCGGGTAATAGGCATTATAGGCATTATATGTATATTTACCATGAGAGTTCAGTTTC ACCATTGTAGAGCCTTTCTATTTTATTTTATCTTATTGTAAGAGTCTTTGTATTTTTACTTTTACTATTTATTATGGTTT TTTAACGACTTTTGATCTCATTTCTCAAATATCATAAAATGAGGCTTGATTTATTTGGGAAACCTCACTCTTCCTCTCTT AGTTATATGTATTACTGGTTGTTGGTTCTATTCACCTTATGTAGTTCTCTTCTTTCTATCATATTTAGATTTCATATTTA TGTGATGTCTGAGTACACATGATTAATTTGGTTGGCTAGAAGAAGAGACTGATGCATCTCTGGTGGAGTGATTAACGATT GTGTGTCTATCTGCATTTAACAGTTTTTAGGATTTTCGGTTTCTTCTCTTTGAATATGTTAAATCCTGACTTTGGAGATT GTTGTTTTATGCCACTCTTTAATTGACTTTGTTGTGCCCTTTGTTCCTCATTATCTGTAACTGTATTCTGGTGTTGTTTA TAGAAGATGTTTTTACCATTCAGTTGAATTGACTTCTTTCATGGTTAGAGTTCGGAATCTTCAAAAAGATAGAATTTTGA AGTGATTGCAATTATGAAGAAAATCTAAAGAAGATGAAATTCCCATATTGTTCGGCGGAAACTATGTCGATCAATTTCTT ATATCTTGTGGGCTTAAATCTTTTTTACAGTATGTATTATGCAATGCACTATATGGTTGTGAGGAACATAAATGCATAAG TCATTGTGTTCTTCCTTCGGCTCTTAATACCATTCCCATGTTTTATGCTTCACGAAGAGAGAAACAGAACCCTATAACTT TATCCTTTCTTGGTCTGAGCTGTCACAACGCTAACCCTTGCCTCACCCTTGTTCGGGTTCTTTCTAACACATCTCTCTGT ATCAAGGTTTTTCTTTTTCTTAGATTTTGAATCTCTAATTCCAATGTGTATGGCGGAGCTATGGATTAGTCTTTCCCCAC TCCTTGGGACTTTGATTTTGTTCCCTGCACTTTTTAGTTTTTGCAGTTGATGGTGCATGCCTTTAAACGCTGTGTGTCTT CAGTTTGTTTACCAATTTTAGCTCTACTTGCATATTTTATGTTGGAGTGATTATTTCTTTTCTATCACAATCATATCTCC CATTTATCCATTCTGAGCTGTTGGATGAAATCATGTTTTGAATTTCGATTCAGAGAATTAATTTGACACTTCTTATCTTT AGCCAACAACTTGAAGTGACTAATTGCAGTGCCCAACTGTTAAAAGTCCAGATCGGTATTTTATCTCTATTTAAGTATTA TTCTGATTGCTATAATTATTCTAACCTCAGTCATAGAGGTTTATTTAGCCTTATCCAGCCATATTCTTGATCTAAATTTG AGAACTCTTTTGGTAAGTTGAAAGACTTCATTGTCTAATTGTATAAATTGTGTAGACTTAGTTCGGCCAGCATCCCAGAT ATTATTAATGCAGACAATGATTTCAAAGCTTTCTATGAGATGATAGATTTGGATTAGATGTTGAATTTGTGCACGAAGCA TCTGTACTGCTTCTGGGTGTCTATGATTGTTTGCAGTATGAACTTCTGCAGAGTAAAAGTAATAGGTCTTCATTGCCAAC AGTACAGAATGTTTCCTTGTTGTGGAATTAAGAGGTGAATCAAAATATCAGGAAAAAGCAGTTCAAGGATCTATCTATCT ATTTATAATAGGCTTAATTACAACTTTGGTCCCCGACGTTTACCAAAGCCACGATTTTGGTCCCCCACCTAATTTAATTA CATGGATGGTCCCCGACGTTGTAGGCCGTGTGCAACGTTAGTCCTACCATTTATTTCTTAATGGAGGAGGCTTACGTGGA CGTCTAGTTTGAGAGAAAAATGAGATCTGAGGAGAGAGGGAAGCACATGAGTATCACATGAACCTTATATGAACCCATTA TACCCAAATCTGAAACCCTAGGATCTAAATCGCGTTACCTTCTTCGTTCCAGGGAGGTCAGAGGTTTGGGTATAATGGGT TCAGATAAGGGTCACGTGATACTCACG
CDS sequence (LotjaGi3g1v0178600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGAGGAGGCAGAGGCAACCATCTTCACGACGTCGTTTGCTGGTTTTACCGGAGGAGATGATTTCCGAGGTTCT TTCTAGGGTTCCGGTGAGGCCCCTTCTGCGATTCAGGTGCGTCTGCAAATCATGGAAAACCCTAATTTCCAGTCCCCAAT TCGTGAAGAACTACTCTCGCATCTCAACCGACCAACGATTGGCCTGTATGACTCACACTGATTGGAGAAAAATAACAACA TGTTCTTTGCAGTCATTGTGCGAAAGTTCTTTGCAGTCATTGTGCGAAATCCAAAACAACAAACTAATAGCCCCTTCGGA AATCTCTAGCTTCAGGGTGGAACGCAGGTATGGTCTTATTTTAGGGTCATGCAATGGGTTGCTGTGTTTGCTTGATGGTA CAGGTTTTTTCAAAATGTGGAACCCGTTTACCAGATTGACATCCAAGAGATCGCCACCGCTTAGTGTCATGAGTCTGCAA ATCACAATGTCAATGACAATGTATGGTTTCGGTTATGATCAGCTTCACAACAAGTACAAAGTGCTAATTATTTTAGAAGA TGGCATCACCAAACTTCATACATTTGGTACTAAAACTAAATCTTGGACAATAATTCAGTTCTTACCGCCGTGTGAGCCGC CGGTGCATTTGGGGGATAGAATGGGTAAATTTGTGACTAGTACTGGTACGCTTAATTGGTTGGTTCGAGAAAGAGATTGA
Protein sequence (LotjaGi3g1v0178600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKRRQRQPSSRRRLLVLPEEMISEVLSRVPVRPLLRFRCVCKSWKTLISSPQFVKNYSRISTDQRLACMTHTDWRKITT CSLQSLCESSLQSLCEIQNNKLIAPSEISSFRVERRYGLILGSCNGLLCLLDGTGFFKMWNPFTRLTSKRSPPLSVMSLQ ITMSMTMYGFGYDQLHNKYKVLIILEDGITKLHTFGTKTKSWTIIQFLPPCEPPVHLGDRMGKFVTSTGTLNWLVRERD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 116 | 116 | - | – | |
| SUPERFAMILY | 9 | 77 | 69 | 1.96E-14 | ||
| PANTHER | 9 | 236 | 228 | 1.4E-34 | – | |
| PANTHER | 9 | 236 | 228 | 1.4E-34 | – | |
| ProSiteProfiles | 12 | 61 | 50 | 12.412 | ||
| Gene3D | 13 | 68 | 56 | 1.4E-9 | – | |
| Pfam | 15 | 59 | 45 | 1.2E-9 | ||
| SMART | 18 | 58 | 41 | 6.2E-10 | ||
| Phobius | 117 | 140 | 24 | - | – | |
| TIGRFAM | 123 | 234 | 112 | 1.5E-12 | ||
| Phobius | 141 | 151 | 11 | - | – | |
| Phobius | 152 | 170 | 19 | - | – | |
| Phobius | 171 | 239 | 69 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0178600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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