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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0179900 |
| Transcript ID | LotjaGi3g1v0179900.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase superfamily protein; TAIR: AT3G48950.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|C6T824|C6T824_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0179900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25030341..25033710) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAATTGACTGATCCATTTCCATGCATGTACCATTTGCCTATAACCGGCCACTACACAGGACCATACTGTTCTTTCCC AACACGTAATTATAAACTTTATGTAACCGATACTAATTATTTTCAATATTCTAATTAATAGCTCTTAAATCAACAAGTTC TTTGAATTCTAATTGCTTCTCAAAGTGTAACGCCTAAAATCCCTTCCATACTTGTCTAACACTATAAATATGACCCTTGT CTATTTCTTCTAAGCCACCAAACAGAACTGAAACCACTCTCAAAGTTACTTACAATCATACCATGATGAAGTCGTGTCCA AAGCTTAGAAACTCCTATGTAATTCCTTTTTTCTTTTTTACATTCAGCTTTTCACGATGCTTTTCTTTTTGTTTCTTCTC AATGTGATTCGACTTTGATTATATCGAATGCACTTTTCTCTTCTCTTTTCCAGCATTTTTAAAAAAATTGTTTCTAGAAT TTTGTTTAGTTGATTCAAGTCAAACATGTATGATTCCTAAGTAAGGGTCATTGTTCTAGTCATATGAACGAAACACACGG TTGAACCCACAATGATGTGGATGTTCCAGGCATAAACTAGACTAGAAGTAAAGTCAAAATCAAATATGTTTTTCCTTGTC ACGGGGTTCTGAAAATTATATCAATTTAATATATGAAAATTATGCCTCAATAATTGCAATTATCAATTTAAAACAATTTT TGGTTTTCTGCAGGTTGTCGGGGTTATTTTCGCAGTGCTGTTATTTGGATCACTAGGAGTGAAGGTAGCAGAATGCAGAG TAGTAAGAAGGTTACAGGATCTTGAGTACCCTGCTATCAATTGCAGAAAACATAGTGCAGTTTTGACTGATTTTGGTGGT GTTGGTGATGGCAAAACATCAAACACCAAGGCTTTTCAATCTGCAATCAGCAATCTCAGCCACTATGCAAATGATGGCGG GGCTATGCTGGTGGTGCCACCAGGGAAATGGCTCACAGGAAGCTTTAATCTCACCAGCCATTTCACACTTTTTCTCCAAA AAGATGCTGTCATTCTTGGATCCCAGGTATCCAGTCTCCTTCTCCCCTTTTCCTGTGGTTAAATTGTTAGATTATTTGGG ACATTGATTCCTTGCATTTGATGTAACCCTTATCGGAGCCATCAATATTTAATGGCTCAGATATTTCATCAAGATCGGAT GGCTAATATAAACTTAATCTTGACTATTTGAATATGATTTATTTTGTGTATGTCACATGTCCGTTGCACTCTATTTTACT ATGAAAGTAGCATTGATCCAAATGTATGTAGCATTCGTTAACACAGTGCAATTGTTGGAAATTTGTTTACCTAATCACAT TAATCTCTAACCTATCTTTGATTTCTTGTCACGTTAGATAAGCAGCATTTGACATCAATTGTTAGTTTTTTTTTTTTAAT TTTGAATTTTCTCCAAAATAAACACTTCCATTGACCATTGACCATCATTAACAGGTTGAATCAGGGTGGCCCTCACTTCC TGTTCTTCCATCATATGGCAGAGGAAGGGATGCACCTGCTGGAAGGTTCAGTAGTCTCATTTTTGGAACACACCTCACTG ATGTTGTTATTACCGGTAAAACTACAAGGCCCATATATTATCATCTCTATTAGAATTTGTTAATATCATGCCTCTTTGGA AAATCATTTTTAATGTCACATGTTTTGAATCTGTTCATTAGGTCACAATGGTACTATTGATGGGCAAGGATCTTACTGGT GGGACAAGTTCCACAAGGGACAATTTAAACTCACCAGGCCTTACATGATTGAGATTATGTACTCTAGTCAAATTCAAATC TCAAATCTCACTTTGGTCAATTCCCCATCTTGGTTTGTCCATCCAATTTACAGCAGGTTTGACATTGATTTTCATTTCAA TTTATGTTCAATCTTCATGGACCATATGTTCTGTTATGTTATTCTCATGTTCTTGTCACACCTTTCACTGCAGTGACATT ATAATTCAAGGGCTGACCATTCTTGCACCGGTTGACTCTCCCAACACAGATGGAATTGATCCTGGTAATTTTGATATCAT TTCTATAATTCTAATATATATAGTTTATTTCCACTGGATTTCAATTTAGTCCTTAAAAGTTGGAAATCATGATTAATATG ATCCTTGAAGGATGAAAAAAGGAAAAAATCCATTTTATATCTTTAAAGACTAATTGAAATTTGGTTTCATCTTTCTCAAT TTTACCTTTGAATTAATTACATTGGTTGGCCTACCCTATGGGGGTTGGTAAGAACAAAGTAATTTACTCATCTTTATCTT CATCACTTTACTGTGATTTTTTTGTCATTTTAGGCAAAACAATTATAATCATTCCCTTTCATTTGTTTAACCTTTCCATG TATAATCCAAAATATCTATAGTTGGCCTTATTGTTCACGGGGTTCAAATGACATTTACTTCTCTAACTATTTCACTCAAA TTTCAATCATTCTCTAACTATTTTTTCCTCCATTTTACAGATTCTTGTTCCAACACTAGGATTGAAGATTGCTATATTGT ATCTGGTGATGATTGCATTGCAGTGAAAAGTGGTTGGGATGAGTATGGAATCAAAGTTGGGATGCCAAGCCAACACATAA TAATCAGAAGACTTACATGCATATCCCCTGATAGTGCTATGATTGCTTTAGGAAGTGAAATGTCTGGCGGAATCCAAGAC ATTAGAGCAGAAGACCTCACTGCTATCAACACTCAATCAGCAGTTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGT GAAGAACATTTTTGTTAAAGGAATGAACTTGTTCACCATGAAATATGTGTTTTGGATGACAGGTTCTTATGGATCACACC CTGACACTGGCTTTGATCCAAAAGCACTTCCTACCATCACTGGAATCAATTATAGAGATGTGATTGCAAAGAATGTCACA TATCCTGCAAAGCTTGAAGGAATTGCTAATGATCCTTTCACTGGAATTTGCATTTCTAATGCGAATATTGAGAAAGTGGG AAAGAAATTGGCATGGAATTGCACTGATGTTCACGGTGTTACAAGCAATGTGTCTCCTGAGCCTTGTGCATTGCTGCAAG AGAAGCCTGGGAAATTTGACTGTCCTTTTCCATCAGACAAACTTCCCATTGAAAGTGTTCAGCTGAAGACTTGTTCCTTT AAAAGTTTGTCACTCTTCTGAGAGAATGAATGTATTTTAAATTTTGAATGTAATACAGTAGTGATGATACTGTTATCCAT GTAAGAGTTCTGAAAAAACTAAATCAAAGCTATTGTTATGCTATTGTTATCTATTGCTATTTTAATACATGTGTTTTCCT TAGTACCAAA
CDS sequence (LotjaGi3g1v0179900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGTCGTGTCCAAAGCTTAGAAACTCCTATGTTGTCGGGGTTATTTTCGCAGTGCTGTTATTTGGATCACTAGG AGTGAAGGTAGCAGAATGCAGAGTAGTAAGAAGGTTACAGGATCTTGAGTACCCTGCTATCAATTGCAGAAAACATAGTG CAGTTTTGACTGATTTTGGTGGTGTTGGTGATGGCAAAACATCAAACACCAAGGCTTTTCAATCTGCAATCAGCAATCTC AGCCACTATGCAAATGATGGCGGGGCTATGCTGGTGGTGCCACCAGGGAAATGGCTCACAGGAAGCTTTAATCTCACCAG CCATTTCACACTTTTTCTCCAAAAAGATGCTGTCATTCTTGGATCCCAGGTTGAATCAGGGTGGCCCTCACTTCCTGTTC TTCCATCATATGGCAGAGGAAGGGATGCACCTGCTGGAAGGTTCAGTAGTCTCATTTTTGGAACACACCTCACTGATGTT GTTATTACCGGTCACAATGGTACTATTGATGGGCAAGGATCTTACTGGTGGGACAAGTTCCACAAGGGACAATTTAAACT CACCAGGCCTTACATGATTGAGATTATGTACTCTAGTCAAATTCAAATCTCAAATCTCACTTTGGTCAATTCCCCATCTT GGTTTGTCCATCCAATTTACAGCAGTGACATTATAATTCAAGGGCTGACCATTCTTGCACCGGTTGACTCTCCCAACACA GATGGAATTGATCCTGATTCTTGTTCCAACACTAGGATTGAAGATTGCTATATTGTATCTGGTGATGATTGCATTGCAGT GAAAAGTGGTTGGGATGAGTATGGAATCAAAGTTGGGATGCCAAGCCAACACATAATAATCAGAAGACTTACATGCATAT CCCCTGATAGTGCTATGATTGCTTTAGGAAGTGAAATGTCTGGCGGAATCCAAGACATTAGAGCAGAAGACCTCACTGCT ATCAACACTCAATCAGCAGTTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTGAAGAACATTTTTGTTAAAGGAAT GAACTTGTTCACCATGAAATATGTGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACACTGGCTTTGATCCAAAAG CACTTCCTACCATCACTGGAATCAATTATAGAGATGTGATTGCAAAGAATGTCACATATCCTGCAAAGCTTGAAGGAATT GCTAATGATCCTTTCACTGGAATTTGCATTTCTAATGCGAATATTGAGAAAGTGGGAAAGAAATTGGCATGGAATTGCAC TGATGTTCACGGTGTTACAAGCAATGTGTCTCCTGAGCCTTGTGCATTGCTGCAAGAGAAGCCTGGGAAATTTGACTGTC CTTTTCCATCAGACAAACTTCCCATTGAAAGTGTTCAGCTGAAGACTTGTTCCTTTAAAAGTTTGTCACTCTTCTGA
Protein sequence (LotjaGi3g1v0179900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKSCPKLRNSYVVGVIFAVLLFGSLGVKVAECRVVRRLQDLEYPAINCRKHSAVLTDFGGVGDGKTSNTKAFQSAISNL SHYANDGGAMLVVPPGKWLTGSFNLTSHFTLFLQKDAVILGSQVESGWPSLPVLPSYGRGRDAPAGRFSSLIFGTHLTDV VITGHNGTIDGQGSYWWDKFHKGQFKLTRPYMIEIMYSSQIQISNLTLVNSPSWFVHPIYSSDIIIQGLTILAPVDSPNT DGIDPDSCSNTRIEDCYIVSGDDCIAVKSGWDEYGIKVGMPSQHIIIRRLTCISPDSAMIALGSEMSGGIQDIRAEDLTA INTQSAVRIKTAVGRGAYVKNIFVKGMNLFTMKYVFWMTGSYGSHPDTGFDPKALPTITGINYRDVIAKNVTYPAKLEGI ANDPFTGICISNANIEKVGKKLAWNCTDVHGVTSNVSPEPCALLQEKPGKFDCPFPSDKLPIESVQLKTCSFKSLSLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 12 | 12 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| TMHMM | 12 | 31 | 20 | - | – | |
| Phobius | 13 | 23 | 11 | - | – | |
| PANTHER | 21 | 473 | 453 | 2.8E-261 | – | |
| PANTHER | 21 | 473 | 453 | 2.8E-261 | – | |
| Phobius | 24 | 27 | 4 | - | – | |
| Phobius | 28 | 478 | 451 | - | – | |
| Gene3D | 37 | 440 | 404 | 6.7E-108 | ||
| SUPERFAMILY | 49 | 471 | 423 | 7.54E-101 | ||
| Pfam | 57 | 111 | 55 | 4.7E-7 | ||
| Pfam | 150 | 431 | 282 | 1.3E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0179900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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