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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0182200 |
| Transcript ID | LotjaGi3g1v0182200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|A0A151RXE3|A0A151RXE3_CAJCA Putative AC transposase; Found in the gene: LotjaGi3g1v0182200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25438695..25443501) extracted from Lotus japonicus Gifu genome v1.2.
GGGATGGCAGAGAAGCCCAAACCCGTGGGCACCCGACCCGGCCCGACCCGATTTTTTGGGTGAAAACCCGAGTTAAATGG GTTCGGGTTCGGGTTCGGGTTTTACCCGATTGCTTTAACTGTTTTCGGGTTCGGGTTTGGGTTTGGCCAAACCCGCACCC GACCCGACCCGAACCCGGTTATGTATAAGTAAAATTCCTTATATATCCTTAGGTATATATATGTTACTAGAATAGAATTA GGCTTTGAGGTTCCACTTTCAGTTCACGGCTTTCTCCTTCTCTGCTTCCTCCGAATCTGCCGTTCTCCTCTTCCAGTCCT GCTCCGTCTCCTTCTTCCGTCCACGGAGCCACCTTCCAGGCGTCCACGGAGCCGCCGTCACCTCCGCTTCAGGTTTTCTC TCTTCCCTTCAACCGTTTCCCCTTAGCCTCTTTTTAATCTGCTTCTGCATTTTAATATTAACAATCTTGTTTCTGTGTAG GAATTTGCTCCTAACCATTCTGAATATTACCCATTTGGTGTAGATCGATGTTTTCTTATCTCCGTGAAAAGTGGACCATA TAGCTAGGTTTGTGGAGCTTCCTGTTATTGGTTCCTCTGGGAAATTTCCACCCATACTTGTTGTGAATGTACAGGTACTT CTACTTTGCTAAAATATAGTTATAATTTTTTAGTCTTCTTTCTAGTCATTGTTTTAACTTTTAATCCCATTGATCTCCTC GGTCCATTCCATTATGACCTCTGTTTAATCTCCTTGGTCCATTCCATTGTTTTAACCCTTGTTTCGTTGCTGTTTTTTTT TCCAGCCTCTTTGTATCTGTTATCTTATCTTCTTTATATATATATTTCATTCTAAAAAAAACAAAGAGAACATTATTATT CCACCAAGTACTCACAGGAGCTAACTAAGCAAATTTTCTTTTGTTTCTTCTTCTTTATGGGAAGGATTATCCACACAGAT ATAAACCTGGTCTAATCCAATAGCTATAGGTAGTCAAGTTCAGTGCATAAAACACAAGGCCAGCATTCTGGGTACTTTTT TCTAATTTAAACCTTTAATAGTAATTTGATGGAACACCCTTTGACTTAAATGAACTTTTGTACCTACCATAGTCATTCAA ATGTACCTTTCATGTATACATTTATATATATTGAATGGAACTTAAGCCACTCCCAACATTTAAATTCTCAAGTTCAAGAC AATTATCTATTTATGTACTTGTCATCTATTCATATTAAATATGACACTGCTGCTACAAATTCTGTTTCTGACTTTCTTTC ATAATTCATATATTCCAATATTGTGATGATTAGAAAGTGACCTTTGATAACTAGCTGAACCTGACCACGGCTGAACCCTT AGCTAAATTTTTGACACATAATGCTTTAACATATTCAAAGACTTGATTGTTTCTAGTAGTTATCATTCTAAGAATAATTG AGTGCTAAAAATTGTGAATGACTCTATCTTGGGATCCCTTCTATTCTATATAATTAAATTATTAAATTGAGATAAGTTTA ATTTTTGTTTGTTTATCAAACATTGTTGTTTACTTTTTCTGATTTTGTTATTGATGTTATAGGGAAAATGGATCAAGTGA ACACAACTCCGGAAGGAACTTCTAATCCTACACAAGAAAGCATGTATGAACCAAGTCTGGAAGGATCTTCTAATCCTACA CCTGAAGGTCCCTCACTAAATGATTCAACTCATGATGGGCAAAATGTTGCAGATTCAACACAACCTCCAACAAAGAAGCC AAAAAGTGAGGTATGGAATGATTTTGATAAGGTTAAAGTGAATGGGGAAGTAAAGGCGGTATGCAAGTGGTGCAAGAAAC ATCTTAGTGGCAATTCAACGTATGGAACAACTCACTTGCGTGGTCATGCAAATAGGTGTACTCAGAAGTTGATTAAGACG AGAGGCCATAACAAAGGGCAAACATTCATCATGCCTAAAGCCATCCAAGGCAAGCAAGAGATAGGCTTTGGAAATTATGA TGCAGAGAAAACAAAGAAGTTGATTGCAAATGCAATTGTCATGCATGATTATCCACTATCAATAGTGGATCATATTGGTT TTAGGAGAATATTAGGTTCTCTCCAACCATTGTTTTTAGTTCCTAGTCGAAACACTATCAAGAAGGAGATTTTGAAAATC TATGATATTGAGAGGCAATGTACTATGAAGATGTTAGACACTCATGAAGGAAGAGTGGCCATTACCACAGACATGTGGAC TGCAAGCAACCAAAAAAAGGGTTACATGGCGGTCACAGTTCACTACATTGATGGCACTTGGACTTTACAAAGTCGAATTT TGAGGTAATAAAGTTTAAATTTCTTTTATCCTACTAGCTGTTTTTGTATGATAAAATTTTTAAATGTAAGTTAGTTATTT ATGTTCCTTGTTATTTTAGGTTCATTTATGTTCCAGCCCCTCACACGAGTGAAAGACTTTGTCAAGTACTTGTCGAATGT TTGATGGACTGGAACATTGACTCAAAATTGTCTACAATCACTTTAGACAATTGTGCTGCAAATGATAAAATGATTGACCT TGTTAAGAATAAGTTGCAGTTGGAGTCTTTGATAAAGGATGGGTCTTTATTGCATATGCGTTGTTCTGCGCATATCTTAA ACTTAATTGTTAAAGAAGGCCTACAAGTGGTGAAGGATGGTGTAGAAAAGATTCGGGAGAGTGTGGGGTATTGGAATGGT ACCCCAAAAAGGCACGAAAAATTTGAAGAAACAGCTAGACAATTGAAAATTAATTGTACTAGAGGCTTAGTAAATGATGT TCCAACTAGGTGGAACTCAACATTTAAGATGCTTGAGTCTGCCATACCATATAAGGATGTATTTGTTCGGCTAGCTCAAC GTGAAAAGCTATACACTTGTTTGCCAAGTAATTCACAATGGCAATTTGCAAAGGATGTTTGTGGGTGTTTAGGATTGTTT AATGATATAACTGAGTTGGTTTCTGGTACCAAATATCCAACTGCCAATCTTTATTTTCCCAAGATTTGTAAGATTAAGTT GGAAATAATTAGATGGCAGAGCTCCTCTAATACATTGATTAAGGAGATGGCAAATAGGATGATGGAAAAATTTGAAAGTT ATTGGAGTGTGATACATGATGTCATGGGAGTTGCTACAGTTCTGGATCCTAGGAACAAGTTGGTAGTGCTTCGGTTCTAT TTTGTAAAGTTGTATGCTAACAACTCAGTTGCACAAGTGAAAAGAATCCAAGATTTGTGTTATGATTTGCTCTCTGATTA TCAAAGCAAAAACAATTCTATTGAAAGCTCTCCATTGATTGATACTAATGTTGTTCATGATGACCCTTTGGTGGAAGAAT TGGAATCGTATGTTGAGAGGGAGGAAGAAGCTAGCTCTACAAATACTAAATCTGAGTTAGATCATTATTTTGGAGAGAAA GTCTTAAAGAAGGCACCGCCTGATTTTGATATTTTAAATTGGTGGAAGGCAAATGGAGGACTTTACCCAACACTTCAAAC AATTGCAAGAGATGTGTTAGCTATTCCTATCTCTTCAGTAGCTTCAGAATCGGCATTCAGCACTAGTGGTCGAATATTGA GCCCTCATCGAAGTCGACTTCATTGGACTACTGTAGAGGCTTTGATGTGTGCTAGGAGTTGGCTATGGTCTAATGAGAGT GATGGTAAAAATTTAAAATTTTAATTCAATATCATTTAATTTCAAATTATGTTTATATATTGTCAACTAATCATTCTTTG GTACTCTATGTGGGATATTTGTAGGGAATTTGAATTCTAGTGTTGCACAAGAATATGCTACGGTATTGAATGAAATGGAG TCCGATGACGAAGGTATTTTATTCTTCATTTGCTTTGAATATGTTATTAATGTTAAGCTTCGATGTTTTATTTAATTTTG ACTTCTTATTACAGCTGAAATAATAGATGGTTTGAGTTACCGTTTTGATGATTAATAGCTACTGCATCTATGCTTTAATG CATAACACGGTTAGTATTATTGTTAACTTTGATTACAATAACTTGTTTCAATGTTGCTTTAAGAAAAATTACTAATGAGC TGCTTAACGTGAATATAACAGGTTGATGTTGAAGATTGTGGACTTTATATAATTGGATTGAGCTATTGAGAACTGTTGTT TTAATTTGGAAGAGGGTGTTGTTGAAGATTGTTGTTTTAATTGTATGCTTTGAGTTTTTCCTTGTGTTGGATTTATGCTT GATGTTGAAGACTTTAAATTGTTGAGTTTATCACTTTTATTTTACTTGTGGTTTTCAAATGTAATTGAGAAGTTTAAGGA CCCATGAATTTTGTAATTGAGAAGATTAAGACTGTTGTTGTCTTTTTAATTGCTTATAATACTATGATTGAGGCACTTGC TAAGGGCCATCATGCTCTTCAAAAAAATGGTGGAGAATAATTGTCAGCCTAATGAATTTACATACAATGTGCTTTTGCAC TTCTGGTTGCTGAAGGGCAGCTTAATAAGCTTGAGTGCTTGACAATATTGTGGAGTCACTATGAAATATATAAATAAGCA GGTGTATGTTTAGGTGATTTTGATTGTAAAAAGCAATGAAATTTGCTAAGAAAGTAATGTTATTCAAGGTTAGATCGGGT TGCAACCGGGTCGGGTTTTATAATTCGGGTTCTTTTTCGGGTCGGGTTCAGCTGTTTGTTTGTGGTTGTGTGCGGGTGTG GGTACGGGTCGGGTGAACCCGAAACCCAATGGGTTCGGGTGTGGGTTTAAGTTCACCACCCATTTCGGGTTTGGGTGCGG GTGCGGG
CDS sequence (LotjaGi3g1v0182200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCAAGTGAACACAACTCCGGAAGGAACTTCTAATCCTACACAAGAAAGCATGTATGAACCAAGTCTGGAAGGATC TTCTAATCCTACACCTGAAGGTCCCTCACTAAATGATTCAACTCATGATGGGCAAAATGTTGCAGATTCAACACAACCTC CAACAAAGAAGCCAAAAAGTGAGGTATGGAATGATTTTGATAAGGTTAAAGTGAATGGGGAAGTAAAGGCGGTATGCAAG TGGTGCAAGAAACATCTTAGTGGCAATTCAACGTATGGAACAACTCACTTGCGTGGTCATGCAAATAGGTGTACTCAGAA GTTGATTAAGACGAGAGGCCATAACAAAGGGCAAACATTCATCATGCCTAAAGCCATCCAAGGCAAGCAAGAGATAGGCT TTGGAAATTATGATGCAGAGAAAACAAAGAAGTTGATTGCAAATGCAATTGTCATGCATGATTATCCACTATCAATAGTG GATCATATTGGTTTTAGGAGAATATTAGGTTCTCTCCAACCATTGTTTTTAGTTCCTAGTCGAAACACTATCAAGAAGGA GATTTTGAAAATCTATGATATTGAGAGGCAATGTACTATGAAGATGTTAGACACTCATGAAGGAAGAGTGGCCATTACCA CAGACATGTGGACTGCAAGCAACCAAAAAAAGGGTTACATGGCGGTCACAGTTCACTACATTGATGGCACTTGGACTTTA CAAAGTCGAATTTTGAGGTTCATTTATGTTCCAGCCCCTCACACGAGTGAAAGACTTTGTCAAGTACTTGTCGAATGTTT GATGGACTGGAACATTGACTCAAAATTGTCTACAATCACTTTAGACAATTGTGCTGCAAATGATAAAATGATTGACCTTG TTAAGAATAAGTTGCAGTTGGAGTCTTTGATAAAGGATGGGTCTTTATTGCATATGCGTTGTTCTGCGCATATCTTAAAC TTAATTGTTAAAGAAGGCCTACAAGTGGTGAAGGATGGTGTAGAAAAGATTCGGGAGAGTGTGGGGTATTGGAATGGTAC CCCAAAAAGGCACGAAAAATTTGAAGAAACAGCTAGACAATTGAAAATTAATTGTACTAGAGGCTTAGTAAATGATGTTC CAACTAGGTGGAACTCAACATTTAAGATGCTTGAGTCTGCCATACCATATAAGGATGTATTTGTTCGGCTAGCTCAACGT GAAAAGCTATACACTTGTTTGCCAAGTAATTCACAATGGCAATTTGCAAAGGATGTTTGTGGGTGTTTAGGATTGTTTAA TGATATAACTGAGTTGGTTTCTGGTACCAAATATCCAACTGCCAATCTTTATTTTCCCAAGATTTGTAAGATTAAGTTGG AAATAATTAGATGGCAGAGCTCCTCTAATACATTGATTAAGGAGATGGCAAATAGGATGATGGAAAAATTTGAAAGTTAT TGGAGTGTGATACATGATGTCATGGGAGTTGCTACAGTTCTGGATCCTAGGAACAAGTTGGTAGTGCTTCGGTTCTATTT TGTAAAGTTGTATGCTAACAACTCAGTTGCACAAGTGAAAAGAATCCAAGATTTGTGTTATGATTTGCTCTCTGATTATC AAAGCAAAAACAATTCTATTGAAAGCTCTCCATTGATTGATACTAATGTTGTTCATGATGACCCTTTGGTGGAAGAATTG GAATCGTATGTTGAGAGGGAGGAAGAAGCTAGCTCTACAAATACTAAATCTGAGTTAGATCATTATTTTGGAGAGAAAGT CTTAAAGAAGGCACCGCCTGATTTTGATATTTTAAATTGGTGGAAGGCAAATGGAGGACTTTACCCAACACTTCAAACAA TTGCAAGAGATGTGTTAGCTATTCCTATCTCTTCAGTAGCTTCAGAATCGGCATTCAGCACTAGTGGTCGAATATTGAGC CCTCATCGAAGTCGACTTCATTGGACTACTGTAGAGGCTTTGATGTGTGCTAGGAGTTGGCTATGGTCTAATGAGAGTGA TGGGAATTTGAATTCTAGTGTTGCACAAGAATATGCTACGGTATTGAATGAAATGGAGTCCGATGACGAAGCTGAAATAA TAGATGGTTTGAGTTACCGTTTTGATGATTAA
Protein sequence (LotjaGi3g1v0182200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQVNTTPEGTSNPTQESMYEPSLEGSSNPTPEGPSLNDSTHDGQNVADSTQPPTKKPKSEVWNDFDKVKVNGEVKAVCK WCKKHLSGNSTYGTTHLRGHANRCTQKLIKTRGHNKGQTFIMPKAIQGKQEIGFGNYDAEKTKKLIANAIVMHDYPLSIV DHIGFRRILGSLQPLFLVPSRNTIKKEILKIYDIERQCTMKMLDTHEGRVAITTDMWTASNQKKGYMAVTVHYIDGTWTL QSRILRFIYVPAPHTSERLCQVLVECLMDWNIDSKLSTITLDNCAANDKMIDLVKNKLQLESLIKDGSLLHMRCSAHILN LIVKEGLQVVKDGVEKIRESVGYWNGTPKRHEKFEETARQLKINCTRGLVNDVPTRWNSTFKMLESAIPYKDVFVRLAQR EKLYTCLPSNSQWQFAKDVCGCLGLFNDITELVSGTKYPTANLYFPKICKIKLEIIRWQSSSNTLIKEMANRMMEKFESY WSVIHDVMGVATVLDPRNKLVVLRFYFVKLYANNSVAQVKRIQDLCYDLLSDYQSKNNSIESSPLIDTNVVHDDPLVEEL ESYVEREEEASSTNTKSELDHYFGEKVLKKAPPDFDILNWWKANGGLYPTLQTIARDVLAIPISSVASESAFSTSGRILS PHRSRLHWTTVEALMCARSWLWSNESDGNLNSSVAQEYATVLNEMESDDEAEIIDGLSYRFDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 58 | 58 | - | – | |
| MobiDBLite | 1 | 63 | 63 | - | – | |
| SMART | 57 | 107 | 51 | 4.1E-11 | ||
| ProSiteProfiles | 57 | 121 | 65 | 9.255 | ||
| SUPERFAMILY | 60 | 108 | 49 | 5.95E-6 | ||
| Pfam | 60 | 100 | 41 | 1.6E-4 | ||
| SUPERFAMILY | 139 | 197 | 59 | 6.15E-5 | ||
| PANTHER | 146 | 668 | 523 | 4.5E-185 | – | |
| PANTHER | 146 | 668 | 523 | 4.5E-185 | – | |
| SUPERFAMILY | 201 | 661 | 461 | 6.07E-95 | ||
| Pfam | 434 | 533 | 100 | 1.6E-25 | ||
| Pfam | 578 | 661 | 84 | 1.2E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0182200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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