Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0185700 |
| Transcript ID | LotjaGi3g1v0185700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|C6T824|C6T824_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0185700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:26074562..26076755) extracted from Lotus japonicus Gifu genome v1.2.
CAGAACTGAAACCTCTCTCAAAGTTACAATCATACCATGATGAAGTTGTGTCCAAAGCTTAGAAACTCTTCTGTAATTCC TTTTTTCTTTCTTACATTCAGCTTTTCACGATGCTTTTCTTTTTGTTTCTTCTCAATGTGATTCGACTTTGATTATATCG AATGCACTTTTCTCTTATCTTTTCCAGCATTTCAGTGTTTTTTTATACGCTATTTACCGTGTTCCATGACTAGAAATTTT GGTTTTCTGCAGGTTGTCGGGGTTATTTTCGCAGTGGTGCTATTGGGATCACTAGGAGTGAAGGTAGCAGAATGCAGAGT AGTAAGAAGATTACAGGATCTTGAGTACCCTGCTATCAATTGCAGAAAACATAGTGCAGTTTTGACTGATTTTGGTGGTG TTGGTGATGGCAAAACATCAAACACCAAGGCCTTTCAATCTGCAATCAGCAATCTCAGCCACTATGCGAATGATGGCGGG GCTATACTGGTGGTGCCACCAGGGAAATGGCTCACTGGAAGCTTTAATCTCACTAGCCATTTCACACTTTTTCTCCAAAA AGATGCTGTCATTCTTGGATCCCAGGTATTTGACATCCATTGTTAATTTTTTTTTTTCATTTTTCATTTTCTCCTAAATC AACACTTCATTGACCAACATTAACAGGTTGAATCAGAGTGGCCCTCACTTCCTGTTCTTCCATCATATGGCAGAGGAAGG GATGCACCTGCTGGAAGGTTCAGTAGTCTCATTTTTGGAACACACCTCACTGATGTTGTTATTACTGGTAAAACTACAAG GACCATATATTATCATCTCATCTCTATTAGAATTTGTTAATATCATGCCTCTTTGGAAAATCTTTTTTAATGTCACATGT TTTGAATCTGTTCATTAGGTCACAATGGTACTATTGATGGGCAAGGATCTTACTGGTGGGACAAGTTCCACAAGGGACAA TTTAAACTCACCAGGCCTTACATGATTGAGATTATGTACTCTAGTCAAATTCAAATCTCAAATCTCACTTTGGTCAATTC TCCATCTTGGTTTGTCCATCCAATTTACAGCAGGTTTGACAATGATTTTCATTTCAATTTATGTTCAATCTTCATGGACC ATATGTTCTGTTATTCTCATGTTCTTGTCACACCTTTCACTGCAGTGACATTATAATTCAAGGGCTGACCATTCTTGCAC CAGTTGACTCTCCCAACACAGATGGAATTGATCCTGGTAATTTTTATATCATTTCTGTAATTCTATTATATATAGTTTAC TTCCACTGGATTTCAATTTAGTCTTTAAAAGATGGAAATTATGATTAATATGATCCTTGAAGGATGAAAAAGGACAAAAT CCATTTTAGATCTTGAAAGACTAATTGAAATTTGGTTTCATCTTTCGGCGGCTAGTTTGTCTACTTTCTTAGCCCTGATA TTTTTCATCGACTAAAGTTACTATTCACTCAAATTTCAATCATTCTCTAACTATTTTTTCCTCCATTTTACAGATTCTTG TTCAAACACTAGGATTGAAGATTGCTATATTGTATCTGGTGATGATTGCATTGCAGTGAAAAGTGGTTGGGATGAGTATG GAATCAAAGTTGGGATGCCAAGCCAGCACATAATAATCAGAAGACTTACATGTATATCCCCTGATAGTGCTATGATTGCT TTAGGAAGTGAAATGTCTGGTGGAATCCAAGATATTAGAGCAGAAGACCTCACTGCCATCAACACTCAATCAGCAATTAG AATCAAAACTGCAGTTGGTAGAGGAGCATATGTGAAGAACATTTTTGTCAAAGGAATGAACTTGTTCACCATGAAATATG TGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACACTGGCTTTGATCCAAAAGCACTTCCTACCATCACTGGAATC AATTATAGAGACGTGATTGCAAAGAATGTCACATATCCTGCAAAGCTTGAAGGAATTGCTAATGATCCTTTCACTGGAAT TTGCATTTCTAATGCGAATATTGAGAAAGTGGGAAAGAAATTGGCATGGAATTACAAGCAATGTGTCTCCTGAGCCTTGT GCATTGCTGCAAGAGAAGCCTGGGAAATTTGACTGTCCTTTTCCAGCAGACAAACTTCCCATTGAAAGTGTTCAACTGAA GACTTGTTCCTTTAAAAGTTTGTCACTCTTCTGA
CDS sequence (LotjaGi3g1v0185700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGTTGTGTCCAAAGCTTAGAAACTCTTCTGTTGTCGGGGTTATTTTCGCAGTGGTGCTATTGGGATCACTAGG AGTGAAGGTAGCAGAATGCAGAGTAGTAAGAAGATTACAGGATCTTGAGTACCCTGCTATCAATTGCAGAAAACATAGTG CAGTTTTGACTGATTTTGGTGGTGTTGGTGATGGCAAAACATCAAACACCAAGGCCTTTCAATCTGCAATCAGCAATCTC AGCCACTATGCGAATGATGGCGGGGCTATACTGGTGGTGCCACCAGGGAAATGGCTCACTGGAAGCTTTAATCTCACTAG CCATTTCACACTTTTTCTCCAAAAAGATGCTGTCATTCTTGGATCCCAGGTTGAATCAGAGTGGCCCTCACTTCCTGTTC TTCCATCATATGGCAGAGGAAGGGATGCACCTGCTGGAAGGTTCAGTAGTCTCATTTTTGGAACACACCTCACTGATGTT GTTATTACTGGTCACAATGGTACTATTGATGGGCAAGGATCTTACTGGTGGGACAAGTTCCACAAGGGACAATTTAAACT CACCAGGCCTTACATGATTGAGATTATGTACTCTAGTCAAATTCAAATCTCAAATCTCACTTTGGTCAATTCTCCATCTT GGTTTGTCCATCCAATTTACAGCAGTGACATTATAATTCAAGGGCTGACCATTCTTGCACCAGTTGACTCTCCCAACACA GATGGAATTGATCCTGATTCTTGTTCAAACACTAGGATTGAAGATTGCTATATTGTATCTGGTGATGATTGCATTGCAGT GAAAAGTGGTTGGGATGAGTATGGAATCAAAGTTGGGATGCCAAGCCAGCACATAATAATCAGAAGACTTACATGTATAT CCCCTGATAGTGCTATGATTGCTTTAGGAAGTGAAATGTCTGGTGGAATCCAAGATATTAGAGCAGAAGACCTCACTGCC ATCAACACTCAATCAGCAATTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTGAAGAACATTTTTGTCAAAGGAAT GAACTTGTTCACCATGAAATATGTGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACACTGGCTTTGATCCAAAAG CACTTCCTACCATCACTGGAATCAATTATAGAGACGTGATTGCAAAGAATGTCACATATCCTGCAAAGCTTGAAGGAATT GCTAATGATCCTTTCACTGGAATTTGCATTTCTAATGCGAATATTGAGAAAGTGGGAAAGAAATTGGCATGGAATTACAA GCAATGTGTCTCCTGA
Protein sequence (LotjaGi3g1v0185700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKLCPKLRNSSVVGVIFAVVLLGSLGVKVAECRVVRRLQDLEYPAINCRKHSAVLTDFGGVGDGKTSNTKAFQSAISNL SHYANDGGAILVVPPGKWLTGSFNLTSHFTLFLQKDAVILGSQVESEWPSLPVLPSYGRGRDAPAGRFSSLIFGTHLTDV VITGHNGTIDGQGSYWWDKFHKGQFKLTRPYMIEIMYSSQIQISNLTLVNSPSWFVHPIYSSDIIIQGLTILAPVDSPNT DGIDPDSCSNTRIEDCYIVSGDDCIAVKSGWDEYGIKVGMPSQHIIIRRLTCISPDSAMIALGSEMSGGIQDIRAEDLTA INTQSAIRIKTAVGRGAYVKNIFVKGMNLFTMKYVFWMTGSYGSHPDTGFDPKALPTITGINYRDVIAKNVTYPAKLEGI ANDPFTGICISNANIEKVGKKLAWNYKQCVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| TMHMM | 12 | 31 | 20 | - | – | |
| Phobius | 12 | 23 | 12 | - | – | |
| PANTHER | 20 | 426 | 407 | 5.8E-238 | – | |
| PANTHER | 20 | 426 | 407 | 5.8E-238 | – | |
| Phobius | 24 | 27 | 4 | - | – | |
| Phobius | 28 | 431 | 404 | - | – | |
| Gene3D | 37 | 430 | 394 | 1.4E-108 | ||
| SUPERFAMILY | 49 | 426 | 378 | 4.78E-96 | ||
| Pfam | 57 | 111 | 55 | 1.9E-7 | ||
| Pfam | 150 | 421 | 272 | 7.4E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0185700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…