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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0185700 |
| Transcript ID | LotjaGi3g1v0185700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|C6T824|C6T824_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0185700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:26074787..26076755) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTAGAAATTTTGGTTTTCTGCAGGTTGTCGGGGTTATTTTCGCAGTGGTGCTATTGGGATCACTAGGAGTGAAGGT AGCAGAATGCAGAGTAGTAAGAAGATTACAGGATCTTGAGTACCCTGCTATCAATTGCAGAAAACATAGTGCAGTTTTGA CTGATTTTGGTGGTGTTGGTGATGGCAAAACATCAAACACCAAGGCCTTTCAATCTGCAATCAGCAATCTCAGCCACTAT GCGAATGATGGCGGGGCTATACTGGTGGTGCCACCAGGGAAATGGCTCACTGGAAGCTTTAATCTCACTAGCCATTTCAC ACTTTTTCTCCAAAAAGATGCTGTCATTCTTGGATCCCAGGTATTTGACATCCATTGTTAATTTTTTTTTTTCATTTTTC ATTTTCTCCTAAATCAACACTTCATTGACCAACATTAACAGGTTGAATCAGAGTGGCCCTCACTTCCTGTTCTTCCATCA TATGGCAGAGGAAGGGATGCACCTGCTGGAAGGTTCAGTAGTCTCATTTTTGGAACACACCTCACTGATGTTGTTATTAC TGGTAAAACTACAAGGACCATATATTATCATCTCATCTCTATTAGAATTTGTTAATATCATGCCTCTTTGGAAAATCTTT TTTAATGTCACATGTTTTGAATCTGTTCATTAGGTCACAATGGTACTATTGATGGGCAAGGATCTTACTGGTGGGACAAG TTCCACAAGGGACAATTTAAACTCACCAGGCCTTACATGATTGAGATTATGTACTCTAGTCAAATTCAAATCTCAAATCT CACTTTGGTCAATTCTCCATCTTGGTTTGTCCATCCAATTTACAGCAGGTTTGACAATGATTTTCATTTCAATTTATGTT CAATCTTCATGGACCATATGTTCTGTTATTCTCATGTTCTTGTCACACCTTTCACTGCAGTGACATTATAATTCAAGGGC TGACCATTCTTGCACCAGTTGACTCTCCCAACACAGATGGAATTGATCCTGGTAATTTTTATATCATTTCTGTAATTCTA TTATATATAGTTTACTTCCACTGGATTTCAATTTAGTCTTTAAAAGATGGAAATTATGATTAATATGATCCTTGAAGGAT GAAAAAGGACAAAATCCATTTTAGATCTTGAAAGACTAATTGAAATTTGGTTTCATCTTTCGGCGGCTAGTTTGTCTACT TTCTTAGCCCTGATATTTTTCATCGACTAAAGTTACTATTCACTCAAATTTCAATCATTCTCTAACTATTTTTTCCTCCA TTTTACAGATTCTTGTTCAAACACTAGGATTGAAGATTGCTATATTGTATCTGGTGATGATTGCATTGCAGTGAAAAGTG GTTGGGATGAGTATGGAATCAAAGTTGGGATGCCAAGCCAGCACATAATAATCAGAAGACTTACATGTATATCCCCTGAT AGTGCTATGATTGCTTTAGGAAGTGAAATGTCTGGTGGAATCCAAGATATTAGAGCAGAAGACCTCACTGCCATCAACAC TCAATCAGCAATTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTGAAGAACATTTTTGTCAAAGGAATGAACTTGT TCACCATGAAATATGTGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACACTGGCTTTGATCCAAAAGCACTTCCT ACCATCACTGGAATCAATTATAGAGACGTGATTGCAAAGAATGTCACATATCCTGCAAAGCTTGAAGGAATTGCTAATGA TCCTTTCACTGGAATTTGCATTTCTAATGCGAATATTGAGAAAGTGGGAAAGAAATTGGCATGGAATTACAAGCAATGTG TCTCCTGAGCCTTGTGCATTGCTGCAAGAGAAGCCTGGGAAATTTGACTGTCCTTTTCCAGCAGACAAACTTCCCATTGA AAGTGTTCAACTGAAGACTTGTTCCTTTAAAAGTTTGTCACTCTTCTGA
CDS sequence (LotjaGi3g1v0185700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTAGAAATTTTGGTTTTCTGCAGGTTGTCGGGGTTATTTTCGCAGTGGTGCTATTGGGATCACTAGGAGTGAAGGT AGCAGAATGCAGAGTAGTAAGAAGATTACAGGATCTTGAGTACCCTGCTATCAATTGCAGAAAACATAGTGCAGTTTTGA CTGATTTTGGTGGTGTTGGTGATGGCAAAACATCAAACACCAAGGCCTTTCAATCTGCAATCAGCAATCTCAGCCACTAT GCGAATGATGGCGGGGCTATACTGGTGGTGCCACCAGGGAAATGGCTCACTGGAAGCTTTAATCTCACTAGCCATTTCAC ACTTTTTCTCCAAAAAGATGCTGTCATTCTTGGATCCCAGGTTGAATCAGAGTGGCCCTCACTTCCTGTTCTTCCATCAT ATGGCAGAGGAAGGGATGCACCTGCTGGAAGGTTCAGTAGTCTCATTTTTGGAACACACCTCACTGATGTTGTTATTACT GGTCACAATGGTACTATTGATGGGCAAGGATCTTACTGGTGGGACAAGTTCCACAAGGGACAATTTAAACTCACCAGGCC TTACATGATTGAGATTATGTACTCTAGTCAAATTCAAATCTCAAATCTCACTTTGGTCAATTCTCCATCTTGGTTTGTCC ATCCAATTTACAGCAGTGACATTATAATTCAAGGGCTGACCATTCTTGCACCAGTTGACTCTCCCAACACAGATGGAATT GATCCTGATTCTTGTTCAAACACTAGGATTGAAGATTGCTATATTGTATCTGGTGATGATTGCATTGCAGTGAAAAGTGG TTGGGATGAGTATGGAATCAAAGTTGGGATGCCAAGCCAGCACATAATAATCAGAAGACTTACATGTATATCCCCTGATA GTGCTATGATTGCTTTAGGAAGTGAAATGTCTGGTGGAATCCAAGATATTAGAGCAGAAGACCTCACTGCCATCAACACT CAATCAGCAATTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTGAAGAACATTTTTGTCAAAGGAATGAACTTGTT CACCATGAAATATGTGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACACTGGCTTTGATCCAAAAGCACTTCCTA CCATCACTGGAATCAATTATAGAGACGTGATTGCAAAGAATGTCACATATCCTGCAAAGCTTGAAGGAATTGCTAATGAT CCTTTCACTGGAATTTGCATTTCTAATGCGAATATTGAGAAAGTGGGAAAGAAATTGGCATGGAATTACAAGCAATGTGT CTCCTGA
Protein sequence (LotjaGi3g1v0185700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRNFGFLQVVGVIFAVVLLGSLGVKVAECRVVRRLQDLEYPAINCRKHSAVLTDFGGVGDGKTSNTKAFQSAISNLSHY ANDGGAILVVPPGKWLTGSFNLTSHFTLFLQKDAVILGSQVESEWPSLPVLPSYGRGRDAPAGRFSSLIFGTHLTDVVIT GHNGTIDGQGSYWWDKFHKGQFKLTRPYMIEIMYSSQIQISNLTLVNSPSWFVHPIYSSDIIIQGLTILAPVDSPNTDGI DPDSCSNTRIEDCYIVSGDDCIAVKSGWDEYGIKVGMPSQHIIIRRLTCISPDSAMIALGSEMSGGIQDIRAEDLTAINT QSAIRIKTAVGRGAYVKNIFVKGMNLFTMKYVFWMTGSYGSHPDTGFDPKALPTITGINYRDVIAKNVTYPAKLEGIAND PFTGICISNANIEKVGKKLAWNYKQCVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 5 | 20 | 16 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| PANTHER | 17 | 423 | 407 | 5.9E-238 | – | |
| PANTHER | 17 | 423 | 407 | 5.9E-238 | – | |
| Phobius | 21 | 24 | 4 | - | – | |
| Phobius | 25 | 428 | 404 | - | – | |
| Gene3D | 34 | 427 | 394 | 1.4E-108 | ||
| SUPERFAMILY | 46 | 423 | 378 | 4.28E-96 | ||
| Pfam | 54 | 108 | 55 | 1.9E-7 | ||
| Pfam | 147 | 418 | 272 | 7.2E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0185700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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