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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0186200 |
| Transcript ID | LotjaGi3g1v0186200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase-like protein; TAIR: AT2G32530.1 cellulose synthase-like B3; Swiss-Prot: sp|Q8RX83|CSLB3_ARATH Cellulose synthase-like protein B3; TrEMBL-Plants: tr|A0A0B2SDP4|A0A0B2SDP4_GLYSO Cellulose synthase-like protein B3; Found in the gene: LotjaGi3g1v0186200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:26199264..26205121) extracted from Lotus japonicus Gifu genome v1.2.
ATCTACTAGTCTAAGTCTAATCTAGTATACAGGCCCTCTAGATACAGCATCTTGGGCAGCAGACTACACTTTTCTCTGCA AATAACTAAAGAGCAGTTCATGAAATCTCACTCAATGGCCAACCAAGGTCATCTCCCTCTCTATGAAAAATTTTGGCTCA AGCGCACATATCAGAGACTAATGGACACCTTGATTTTACTCCTCCTCCTCTTGCTTCTCGCTCACCGTGTCTTCTCTATT ATTAACAACAACAACAACAACTTCACTCTCCCACTGTTCCTTGCTTTCTTATGTGAATCTTGGTTCACCTTAACTTGGAT TATCATTCTCAACACCAAATGGAGTCCTGCAGTCACCAAAACTCACTTAGACCGTCTCCATCAACAGTATGTATTAACAC AAAGCTATTGATGCTTGCTCCTTTGATAAGTCAAGCTATTTTGAATTTGATTCCTCATTTCTATTAAATGCATTTTCAAA AATTCTTCTATAATTTAGTAAAATCAATTATGGGAAGAAGCTTATGTGTCCGAGTTCCAGAATAGTTCATTTTGAGAGTA GAGAAGTTAATCCAAACATACTATAGGTCAAGCTATTTATTTTGTATTTGATTATGCAGTAATTTTTTAGTGACAAAATT TGTTCTGACAGAAAAGCTAATCCGAAGATGCTACAAGTCTTCATTTCTAGTGTTCTACAAGTAGTAGCTTTGTTTCAGGT TGCTAAATTGCTTCTTGTTGCTTATGTATGAGTTTTTACTTTTGATTTCAATAGGGTACATGAGCTTCCACCAGTGGATT TGTATGTGACAACAGCAGATCCTGTACTTGAACCACCACTCATCACTATGAACACTGTGCTTTCTCTTTTGGCACTTGAT TATCCAGCTAACAAGCTAGCTTGCTATGTTTCTGATGATGGGTGTTCTCCTCTGACCTTCTATGCTCTTGTGGAAGCCTC TGAATTTGCTAAGCGTTGGGTACCTTTCTGTAAGAAGCACAACATACAAGTTAGAGCACCTTTCAAATACTTTTATGAGT CCACTACCAAAAGTGAAGATTCACCAGAATTCAAACAAGAATGGCTGCGGATGAAGGTAACTATAACTACGTTTGAAAAT CATCTTACAAATAATTATAAAATAGTCAGAATTAATTTTAAAAAGAAGCTTCTATGAGTAATGAGTAGTACTCTGAGATA AAAACTATATGTATTTGGAGTTTGGACCGTGAACCGCAAAATGGTTTGTCTATTGTGTTTTAATTGCAGGATATGTATGA CAATCTTAGCCAAAAAATTGAAGATGTGACCCGAAACCCAATTTCATTCAAACTTGACGGAGAATATGCAGTTTTCTCAA ATACAGAGAGAAGAAATCATCCAAGCATAATTAAGGTAATTTGGTTCAAGATCTTCTACCCCAAATTGTGTATTAGTTTC ATGTTCCACTAATGAAATATGGACATGTCAATTAAAAAAATATACAAAAGAGAGAGTGATAAACTTAAGTAATAGTTTTT AATTGATATGACCAAATTTTATTTCTAGAAAATAGACTCGGACATGGTTTTAGAAAAGAGGACTCCAATCCAATAAATAT GATATAAAAGATGGAGTTAGATACATGTACCATCAAACAATAGAAAGTTAATTTAACACCTACTTTTGTGTCCTATTTTG ACCGCAACAAAGTAGGAAATAGAGAAACAATAACTTTATCGCTTGATCGCAGTGAGAAACTACAACAAAAGCGGGTGGTA CACATTTCATTATCATAAAAAATATTCATGCAACTGCACTGAACATTTAGTCCTTGTATTTAACAAATTGTTCTTGCATG CTTGAAAAATGAACTACCAAGAAACTCAAAAGACTTTCTACATAGTTGAAAATCCATGCTTTAAAAAAAACATATTCGAA AACCCATCCACAGCCAAAATCAATTCTAATGAAAAACACATATGAGTAACTTTTGAGTTTTAGAGTCCAAGGAAATACAA GTCAATCCAAACATTTACATTACCTGTGGGCAGGTTATAGTGGAGAACACCGATGGATTGCCCCACTTAGTTTATGTATC CAGAGAGAAAAGGCCAGAGTATCCACATGATTACAAAGCCGGAGCTATGAATGTTTTGGTAATTCTAATTTTTAACTAAA GTTTGGTTCTGTGGATTCTAATTATGATCAAATCCCAAATCTATTTTTTGTTAATTACTGGCACATCCATTCTTTTCTTT CTTTAATATGAGCAGCTCAGAGTGTCTGGGTTGATGACCAACGCTCCCTATATGTTGAACGTGGACTGTGACATGGTTGT GAACAATCCCAAGATTGTTCAACATGCCATGTGCATTTTGATGGATGCTAAGAATGGAAAAGATGTTGCTTTTGTTCAAT GTTTTCAACAGTTCTACGATGGAATCAAAGATGATCCTTTCGGAAACCAGTGGGTGGCTACATATGAGGTGTTTTAATCA AAGTTTCAACTTTCAAATAAATCTCTCAGATTACTCTTCAGCTACACATACCATTTATGAACAAAATTTAATTTCCTTGT CCTTAATTAATGCAGTACATAATAAGGGGCATAGCAGGACTTCAAGGACCTTTTTATGCTGGAACAAACACCTTTCATAG AAGAAGTGCCATTTATGGTCTTTATCCTGATCAAATCCAAAATGGGGGAAAAGGTCTTGCTCTCTCATAAACAACACAAA ATTCACTTATTCCAAACTAAACTTGCTGATTTTGTATCTTTTGTAGGAAAACTAGTAGAAAAGACATTAATACAACAATT TGGAAGTTCAAAAGAGTTTGTCAAATCAGCAGCTCATGCTTTAGAAGGGACTAATTTTGATATCAGTAGTCCTTCCAACT TAGTTGAGGCAGCAATCCAAGTCTCTGATTGTGGATATGAATATGGCACTTGCTGGGGTAAAAAGGTATGTAACTCGAAT AAATATCTTCAAGAACTTGTCTAATGAGCGTCAGCAGCACACTCTTTTAAGGATATACTTCAACACTCTTATTGTGATTA GTTTGTTATTTAAAAAGTTAAACACTTCTTAAAATATGTGTTGGCTTTTCAAGAAATTGAGTTGTGTCCCTAAAAGAGTG TGTTGCTAGCATTACTCTTTTATCCTATTGGGTTCCATAAGGATCTTAAGTACCATCAAAGTGACCTGGCCTAGCACACT AGGGTGGCTCACCATGAATTAAAAGAAAAAGTGAGTTGAACCGAGTTAATTAGCTCAACTCTCCGATGAACCTCTAAAAT TGTAACTTAGCTCAAACCCATGAGCTGGTAGGTTACTCTAGCCGATTCACCTTTGATTAAAAATAAATAAAAATTCTCAA AAATTGCAAAGAGTACTATAAATCAGAACATGCTGAAAAAAAATTCTTGAAGAAAATAATGGTCCACTAATAAAAAATCA ATTTATTAAAAACTCATTTTAACAGTTTTTCTTAAAAAATAAAATTTAAATAAAATAAAAATCAGTCATAAGTAATTTTG AGTAATTCTTTAGTTGATTTGTTGATTCATTAGTAGTTTTCATTCGCTAAGTAATTCGTTTAATAATTGAAATTATATGG ATCAAAACTGTTACTTTAACATTGGTTGCAATTCATTTAGCCCAATGAGTTGGGAGAGCGAACCCAAAACAACTTATATA AATGAGTGTCTATTTTTCCAATCCAACCAACCTAAAACGTGAGTTTGAGGGAGCTAGTTCACAAGCTGAAACCCAATTTC ACAAGCCTAATGCTAAGTGGATTGATAGTGTTGTTTATAAAAGTTTAAGTAGTAAGTGAGTAAAATTTACAATTTTTTTT AACATTATTGTGTCTAGACAAAGTTAACCTATTGCTGCAAAGTTTAAATTTGGTTACTTATTAGCTTTGACGATTCTTTA CTCAACTTTAGATGGGGTGGTTATATGGATCAATCTCAGAAGACGTACCTACGGGGTTGAACATGCAAAGAAAAGGTTGG AGATCAGAGTGTTGCACCCCAGATCCAATTGCCTTTAAAGGTTGTGCTCCTGGAGGATTACTCACAACAATGATCCAACA AAAGAGATGGGCCTCAGGCCTCACTGTTGTCTTTTATGGCAAGCATTCTCCAGTTATGGGCACCCTCTTCGGTAAGATCC CACTCAGGGCATGCCTGTCCTATTGTTGGATCACCACCTGGGGCTCCAGATCCATCTTTCAAGTTTGCTATGCTGCACTC ATTGCATTTTGCCTCATTACCAACACCACCATCTTCCCCAAGGTTAGATCCACTTTTAGTGCCATTGTGAATTTTGTTAG AACAACACTAGTTTTAATCTTATCTAAATTGTGAATTTTGTTCGAATAACCCTAGTTTTAATCTTATCTAAAATTGACAT TCATCAAGATTTCTTAGACTAACACTCAACTTAATTCTTTTCAAAAATCTACATCGATTTTAAATAAAATGAAACCGTGT GTTGTTCTGACATTAAAAGTCAGATATATTTTATTTCTACAAAAGTATGATTAAAAATTGACAAATTATAGGTGCCATAA TAAAAAAATTATTTTTTTATATTATTTAACTGTAAAGACTTAAATACATTTTTGGTCCTATAGTTTTTGCAATGCGTAAT TTTGGTCCTTTTAGTTTCAATTGTTCAAAATGAGTTTCTCTACTTTCAAAATTGAATAATTTTGATTCAAATGTTGATTT GTCATTCAATAACTAACGAAAGAATTGGACATATAGCATAATCTTTTACATGTGAAGTGACACAAATCATCTTAACTTGT CATTCGCATAAAAATTTATAATCAACTTCAACATTTTTCATTAGTAATTTGATAAAAAGTCAGCATTTCGTCAAAAAAAT TCAATTTAAAAGTAGAGTGATTAATATTGCGCATTTCTAAAACTATATGACAACTAAGTTTTAGAGCTTAATAATTAATT AGATGATTGTGTTCCCTTTTATTCCAGGGACTTGGGCTATGGATTCCTGTTACTCTTTTTGTGATCTACAACATACAAAC TCTAATAGAGTATCGATTAATCGGGTTGTCTCTCCGACATTGGTGGAACAACCAGAGAATGAGCATAATCAGAACCTCAA CTGCATTTTTTATCGGATTTTTGAGTGCCATGATTAAGCTCTCGGGGATATCTGATACGGTCTTTGAAATAACACAGAAG GAAACTACAACTTTTGGTTCTGATGATGGAGATGATGTAGATGCAGGTAGGTTCACCTTTGACGAGTCTCCGGTTTTTAT GGCAGGCACAACGTTTCTGCTGGTGCAATTGACAGCTCTTGTGATTAAGTTTTTTGGGTTGAATCCTCAAGCACAAGCTC ATAGTGGCAATGAATGTGGACCTGGGGAGTTGATTGCTAATGTGTATTTGGTAGTGTGCTATTGGCCTTATTTGAAAGGA TTGTTTGGCAGAGGAAAGTTTGGGATTCCCTTCTCCACAATGTGCAAGTCAGCAGTGCTAGCAATTGCTTTTGTGCACTT CTGTAGATGTACTGTTATTGGTTGAGACTTGATATCATTATATTAAATTTCTGGCTTAAATAAATTTGGGTCCATGTAAA TATACCAATTTTTTGAATTTAGACCTTGCAATAAAATTATAGTTTGAAATCCCAAGATTAAAAGTGCTCCTATATATGCC AACTTTTATCCCAGTCAGCAATGATACACTGCCATTATGTCACACGATTGCTGACATGGATTTTCAAAAAAATATCATTT TAATTTTTTGTAATATATGAGGTTCGCGCTTCTGGACCCAGCAAAATTTTCATCGATTTTAATCCCCTTAAAATTTAAAT CATCAGTTTTAGTCCCTC
CDS sequence (LotjaGi3g1v0186200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATCTCACTCAATGGCCAACCAAGGTCATCTCCCTCTCTATGAAAAATTTTGGCTCAAGCGCACATATCAGAGACT AATGGACACCTTGATTTTACTCCTCCTCCTCTTGCTTCTCGCTCACCGTGTCTTCTCTATTATTAACAACAACAACAACA ACTTCACTCTCCCACTGTTCCTTGCTTTCTTATGTGAATCTTGGTTCACCTTAACTTGGATTATCATTCTCAACACCAAA TGGAGTCCTGCAGTCACCAAAACTCACTTAGACCGTCTCCATCAACAGGTACATGAGCTTCCACCAGTGGATTTGTATGT GACAACAGCAGATCCTGTACTTGAACCACCACTCATCACTATGAACACTGTGCTTTCTCTTTTGGCACTTGATTATCCAG CTAACAAGCTAGCTTGCTATGTTTCTGATGATGGGTGTTCTCCTCTGACCTTCTATGCTCTTGTGGAAGCCTCTGAATTT GCTAAGCGTTGGGTACCTTTCTGTAAGAAGCACAACATACAAGTTAGAGCACCTTTCAAATACTTTTATGAGTCCACTAC CAAAAGTGAAGATTCACCAGAATTCAAACAAGAATGGCTGCGGATGAAGGATATGTATGACAATCTTAGCCAAAAAATTG AAGATGTGACCCGAAACCCAATTTCATTCAAACTTGACGGAGAATATGCAGTTTTCTCAAATACAGAGAGAAGAAATCAT CCAAGCATAATTAAGGTTATAGTGGAGAACACCGATGGATTGCCCCACTTAGTTTATGTATCCAGAGAGAAAAGGCCAGA GTATCCACATGATTACAAAGCCGGAGCTATGAATGTTTTGCTCAGAGTGTCTGGGTTGATGACCAACGCTCCCTATATGT TGAACGTGGACTGTGACATGGTTGTGAACAATCCCAAGATTGTTCAACATGCCATGTGCATTTTGATGGATGCTAAGAAT GGAAAAGATGTTGCTTTTGTTCAATGTTTTCAACAGTTCTACGATGGAATCAAAGATGATCCTTTCGGAAACCAGTGGGT GGCTACATATGAGTACATAATAAGGGGCATAGCAGGACTTCAAGGACCTTTTTATGCTGGAACAAACACCTTTCATAGAA GAAGTGCCATTTATGGTCTTTATCCTGATCAAATCCAAAATGGGGGAAAAGGAAAACTAGTAGAAAAGACATTAATACAA CAATTTGGAAGTTCAAAAGAGTTTGTCAAATCAGCAGCTCATGCTTTAGAAGGGACTAATTTTGATATCAGTAGTCCTTC CAACTTAGTTGAGGCAGCAATCCAAGTCTCTGATTGTGGATATGAATATGGCACTTGCTGGGGTAAAAAGATGGGGTGGT TATATGGATCAATCTCAGAAGACGTACCTACGGGGTTGAACATGCAAAGAAAAGGTTGGAGATCAGAGTGTTGCACCCCA GATCCAATTGCCTTTAAAGGTTGTGCTCCTGGAGGATTACTCACAACAATGATCCAACAAAAGAGATGGGCCTCAGGCCT CACTGTTGTCTTTTATGGCAAGCATTCTCCAGTTATGGGCACCCTCTTCGGTAAGATCCCACTCAGGGCATGCCTGTCCT ATTGTTGGATCACCACCTGGGGCTCCAGATCCATCTTTCAAGTTTGCTATGCTGCACTCATTGCATTTTGCCTCATTACC AACACCACCATCTTCCCCAAGGGACTTGGGCTATGGATTCCTGTTACTCTTTTTGTGATCTACAACATACAAACTCTAAT AGAGTATCGATTAATCGGGTTGTCTCTCCGACATTGGTGGAACAACCAGAGAATGAGCATAATCAGAACCTCAACTGCAT TTTTTATCGGATTTTTGAGTGCCATGATTAAGCTCTCGGGGATATCTGATACGGTCTTTGAAATAACACAGAAGGAAACT ACAACTTTTGGTTCTGATGATGGAGATGATGTAGATGCAGGTAGGTTCACCTTTGACGAGTCTCCGGTTTTTATGGCAGG CACAACGTTTCTGCTGGTGCAATTGACAGCTCTTGTGATTAAGTTTTTTGGGTTGAATCCTCAAGCACAAGCTCATAGTG GCAATGAATGTGGACCTGGGGAGTTGATTGCTAATGTGTATTTGGTAGTGTGCTATTGGCCTTATTTGAAAGGATTGTTT GGCAGAGGAAAGTTTGGGATTCCCTTCTCCACAATGTGCAAGTCAGCAGTGCTAGCAATTGCTTTTGTGCACTTCTGTAG ATGTACTGTTATTGGTTGA
Protein sequence (LotjaGi3g1v0186200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSHSMANQGHLPLYEKFWLKRTYQRLMDTLILLLLLLLLAHRVFSIINNNNNNFTLPLFLAFLCESWFTLTWIIILNTK WSPAVTKTHLDRLHQQVHELPPVDLYVTTADPVLEPPLITMNTVLSLLALDYPANKLACYVSDDGCSPLTFYALVEASEF AKRWVPFCKKHNIQVRAPFKYFYESTTKSEDSPEFKQEWLRMKDMYDNLSQKIEDVTRNPISFKLDGEYAVFSNTERRNH PSIIKVIVENTDGLPHLVYVSREKRPEYPHDYKAGAMNVLLRVSGLMTNAPYMLNVDCDMVVNNPKIVQHAMCILMDAKN GKDVAFVQCFQQFYDGIKDDPFGNQWVATYEYIIRGIAGLQGPFYAGTNTFHRRSAIYGLYPDQIQNGGKGKLVEKTLIQ QFGSSKEFVKSAAHALEGTNFDISSPSNLVEAAIQVSDCGYEYGTCWGKKMGWLYGSISEDVPTGLNMQRKGWRSECCTP DPIAFKGCAPGGLLTTMIQQKRWASGLTVVFYGKHSPVMGTLFGKIPLRACLSYCWITTWGSRSIFQVCYAALIAFCLIT NTTIFPKGLGLWIPVTLFVIYNIQTLIEYRLIGLSLRHWWNNQRMSIIRTSTAFFIGFLSAMIKLSGISDTVFEITQKET TTFGSDDGDDVDAGRFTFDESPVFMAGTTFLLVQLTALVIKFFGLNPQAQAHSGNECGPGELIANVYLVVCYWPYLKGLF GRGKFGIPFSTMCKSAVLAIAFVHFCRCTVIG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 46 | 46 | - | – | |
| PANTHER | 9 | 744 | 736 | 0.0 | – | |
| PANTHER | 9 | 744 | 736 | 0.0 | – | |
| TMHMM | 27 | 45 | 19 | - | – | |
| Phobius | 30 | 41 | 12 | - | – | |
| Phobius | 42 | 46 | 5 | - | – | |
| Phobius | 47 | 55 | 9 | - | – | |
| TMHMM | 55 | 77 | 23 | - | – | |
| Phobius | 56 | 77 | 22 | - | – | |
| Phobius | 78 | 544 | 467 | - | – | |
| Pfam | 103 | 386 | 284 | 3.3E-87 | ||
| SUPERFAMILY | 117 | 512 | 396 | 1.24E-9 | ||
| Gene3D | 228 | 385 | 158 | 1.4E-11 | ||
| Pfam | 392 | 742 | 351 | 4.5E-52 | ||
| TMHMM | 544 | 566 | 23 | - | – | |
| Phobius | 545 | 565 | 21 | - | – | |
| Phobius | 566 | 570 | 5 | - | – | |
| TMHMM | 571 | 593 | 23 | - | – | |
| Phobius | 571 | 592 | 22 | - | – | |
| Phobius | 593 | 612 | 20 | - | – | |
| TMHMM | 606 | 628 | 23 | - | – | |
| Phobius | 613 | 633 | 21 | - | – | |
| Phobius | 634 | 662 | 29 | - | – | |
| Phobius | 663 | 683 | 21 | - | – | |
| TMHMM | 663 | 685 | 23 | - | – | |
| Phobius | 684 | 752 | 69 | - | – | |
| TMHMM | 697 | 716 | 20 | - | – | |
| TMHMM | 726 | 745 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi3g1v0186200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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