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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0191000 |
| Transcript ID | LotjaGi3g1v0191000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyubiquitin; TAIR: AT2G32350.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|P0CG70|UBI4P_NEUCR Polyubiquitin; TrEMBL-Plants: tr|I1M427|I1M427_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0191000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:27651132..27653001) extracted from Lotus japonicus Gifu genome v1.2.
TAGATGATGCTGGTGTCCTTGTAGGATTTGCAACAATCAGGATGTGACACTTGTATGTAACAAGCATCTTGTGCTAATTA TCTGTTATAATTACCAAGTTTTAAGAAGGCTCCTTACTCACTCTCACAACTTGTAGCAACAACACAACAACCACACAGAG AATTCTGTTATTTTCACTTATCGCAGGCATGTAATGTAACAGACTCATTCTGATTATTTCCATGAGTACAATTTTGCTCA GTTGCTATTTCTTTTTTCTTTTGGTCTAACTTTGCTCTTCACACAATCGAAGGCAAAATATGGCCCAAGTTATTGGCCAT GACACACCAAAACAGAATGAAGCCTAGCCAACATCATGGCAAGATAATGAATTGCATCAAGTTGAATTATGACTTTAATT GGTCTAAGAAGTTTTTGCTTGAATGTCAAGCGCTTAATTGTATGATATACCATAAAAGCATCATTTAAAATATTGCAAAA TGATTAATCAACAGTATTTTGTTAAAATCTCAATATATATGCTACAACCTATGTTTACCCCAAATTGGTAAAACGATTTG GTGCAAATCTGTGATAAAACACAATTCAAGCTGTTTTCCTCTTGTAGAATAAAAAAATAAATACAGAATTCAAGCTTTCC TTACTTTTACTCTGACATTGCCATTTTAGATTAAATAAACAGTTAAGAGTCAATTTTAGAAAATGCAGTTTCAAAGATAC CCCTAAGATCACAGTCAAAGAGATCTTTTTGCATGATATTGAACCCCACATTAGGGAATAAATTCAAGGCATGTGTCAAG CACTCATATATTTGACATGAGTATAACGATCTACATTCACTTGCATCCATAATCACATGAGGCTAACTATATAATTTTGA GTCCTCATGGCTTATGACTGACACATTTAACATACAGTCCTTCTAAATAAAAGACTGCTCAAACTTTCTGTTCTTATTTT CCTCCTTCCTTTCCAAGAATATCAGGCACCAGATTAATTTCACTATGATAATTGCAATTGTCACAAGAACAAACCAATTT TTCCTTGAAGTGGGTGCCCAAGAAAAAGTTGCTGAAATCAAAAGAAATATTGAGCAAATCTATGGTGTTCCAATGGCTTC ACAAATCCTAACAGTTTCTGGGTGGGAACTCATGGACGGGTTAGACATGGAAGATTACCCTATAGTCACTGAAGGCACAA AAGTTCACCTCACCATCAAACCAGTGGAGCCACGCCCCATTAATAATCCTAACCAAATGCAAATCACAGTAAAATTTTCA GCTAGAAAGATTAATATTGAGGTGGACAGAACAGATACTATTCGTATCTTGAAGGAAAAAATCCACATCATTGATAGCAT GCCCATCAAAAGAATGACCCTTTTCTTTTCTGGTATAGAATTGGATGAAGAATTCAGAAAGCTACATGAGTATGGCATTG GGGAATTTTCTGAAATTGTGGTGTTCCTCAAGCCCGTGAGTCGCTCAAGAGAAGAACCTCCCACAAGAAAGTTAAGCTTG GTGGTACAAACTTCCTCTAGTTTGCTTAATGCAGCTACCATTCCGGTGGAGATGAGAGATATAAGTACTGTTGGTGAATT GAAGCAGTTATTGCTAAGCAAAAAAGTTCTGCCAGTTGATGACTATTTGTTTATACACAAGCAGAGGATCATGCGCGATA GTTGTAGCCTCCGGTGGCATGGAGTTGAAAATGGGGACTATCTATATGTTTTTAAAGGAACGGTTAGTCGCAGTGGTTAT GCCTGAGCTTGAAATCACCACAATTATATATTGCTTTTCATTGTTTGTCACATGTTGCCTTCTTGCATCTTTGTTTATCA CATTTAGATCCAAAAGATGAATAACACTTT
CDS sequence (LotjaGi3g1v0191000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAATTGCAATTGTCACAAGAACAAACCAATTTTTCCTTGAAGTGGGTGCCCAAGAAAAAGTTGCTGAAATCAAAAG AAATATTGAGCAAATCTATGGTGTTCCAATGGCTTCACAAATCCTAACAGTTTCTGGGTGGGAACTCATGGACGGGTTAG ACATGGAAGATTACCCTATAGTCACTGAAGGCACAAAAGTTCACCTCACCATCAAACCAGTGGAGCCACGCCCCATTAAT AATCCTAACCAAATGCAAATCACAGTAAAATTTTCAGCTAGAAAGATTAATATTGAGGTGGACAGAACAGATACTATTCG TATCTTGAAGGAAAAAATCCACATCATTGATAGCATGCCCATCAAAAGAATGACCCTTTTCTTTTCTGGTATAGAATTGG ATGAAGAATTCAGAAAGCTACATGAGTATGGCATTGGGGAATTTTCTGAAATTGTGGTGTTCCTCAAGCCCGTGAGTCGC TCAAGAGAAGAACCTCCCACAAGAAAGTTAAGCTTGGTGGTACAAACTTCCTCTAGTTTGCTTAATGCAGCTACCATTCC GGTGGAGATGAGAGATATAAGTACTGTTGGTGAATTGAAGCAGTTATTGCTAAGCAAAAAAGTTCTGCCAGTTGATGACT ATTTGTTTATACACAAGCAGAGGATCATGCGCGATAGTTGTAGCCTCCGGTGGCATGGAGTTGAAAATGGGGACTATCTA TATGTTTTTAAAGGAACGGTTAGTCGCAGTGGTTATGCCTGA
Protein sequence (LotjaGi3g1v0191000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIIAIVTRTNQFFLEVGAQEKVAEIKRNIEQIYGVPMASQILTVSGWELMDGLDMEDYPIVTEGTKVHLTIKPVEPRPIN NPNQMQITVKFSARKINIEVDRTDTIRILKEKIHIIDSMPIKRMTLFFSGIELDEEFRKLHEYGIGEFSEIVVFLKPVSR SREEPPTRKLSLVVQTSSSLLNAATIPVEMRDISTVGELKQLLLSKKVLPVDDYLFIHKQRIMRDSCSLRWHGVENGDYL YVFKGTVSRSGYA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 60 | 60 | 11.508 | ||
| Gene3D | 1 | 72 | 72 | 1.5E-9 | – | |
| PANTHER | 1 | 252 | 252 | 4.7E-123 | – | |
| PANTHER | 1 | 252 | 252 | 4.7E-123 | – | |
| SMART | 1 | 72 | 72 | 1.0E-6 | ||
| SUPERFAMILY | 3 | 74 | 72 | 8.52E-13 | ||
| CDD | 3 | 69 | 67 | 1.14207E-6 | – | |
| Pfam | 8 | 73 | 66 | 1.7E-10 | ||
| SUPERFAMILY | 78 | 164 | 87 | 3.45E-15 | ||
| Gene3D | 84 | 156 | 73 | 1.8E-16 | – | |
| SMART | 85 | 156 | 72 | 5.8E-8 | ||
| ProSiteProfiles | 85 | 156 | 72 | 14.665 | ||
| Pfam | 87 | 157 | 71 | 9.7E-14 | ||
| CDD | 87 | 154 | 68 | 2.44787E-11 | – | |
| Gene3D | 158 | 248 | 91 | 1.7E-8 | – | |
| ProSiteProfiles | 170 | 242 | 73 | 11.66 | ||
| SMART | 170 | 245 | 76 | 2.9 | ||
| Pfam | 181 | 242 | 62 | 8.1E-6 | ||
| SUPERFAMILY | 184 | 246 | 63 | 1.38E-10 | ||
| CDD | 185 | 243 | 59 | 6.21145E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0191000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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