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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0192600 |
| Transcript ID | LotjaGi3g1v0192600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-amylase; TAIR: AT2G32290.1 beta-amylase 6; Swiss-Prot: sp|O22585|AMYB_MEDSA Beta-amylase; TrEMBL-Plants: tr|G7IKM6|G7IKM6_MEDTR Beta-amylase; Found in the gene: LotjaGi3g1v0192600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:27809971..27814503) extracted from Lotus japonicus Gifu genome v1.2.
CGTCCTAGTAATTATTAAATCATTTAAATTGTAACAATAGTTAAATAATCATAATTGACTCATATATTTTACTAAAATTA TGATTTAAAACGAAAAAGAGCAACGTCCACTCGCGTCGCGTGTCACGTTCGTTCCTTATTCGCTCGCTCGCTCCATAATC TAGATTCGTAAAGTGAACTCAAACCACCGCAACTAATTACGGTTATTCATTCTCTCTTCATTTTCTGTTATTCGATTCTC TCAATATTCTCAGATAGATTTTCTCATTACATGCAAACAGAGCCTAGTTGTAAACGTGATTAGCAGCTAATTACTGGCGT TAATCTTGGTGTGTGCAGCACAGAAGCACAAGGAAAACGAAGACGACAATGTCGACGTTTCATCTTCAAGAAAGGTATTT TCAACAGGGAATTACAGCATGGAATGGAGGAGGAGGATCCACAGCTATACGTGCAGAGAGAGCAAGGAAGCCAAAAGCCT CCTTCTTCAAATTGGATCCCAAACACGTCAAGAACCACCACAAAAATCAAAATCATCGCGCTGCAGCTGCTGTGTGTTCC GCATTGTTCAAATCTGCAGTTGCTGAACCACAAGTGAGTAATAGTCATTGATTCATTGTTAATTAGTTACTGTATCAATA TCATAATCATGAAGAAGAAGGTGTGAGTAGTTTTGAACTTTGATATGAATTGAATTGAATGTATGGTTCATCGTTCTTGC ACGTGTTTCGTTCTTCTTTTTCCGTTTTCATTTTGTTTCTTTCTGCATATTCTCCACTCGTTGTGCAAGTATTTTAGTTC AGTTCTATCTTTTTGCGTTTTCTTGTGACCAAACGAAGTTGAATTGACCATAATGACCCTAACTCATCGTCTTCCCCTTT CTTTGTAATCATGTAGTAGTACTATTTTGTTTGGTTTCTTGGACTGGACGTGAGTGAGTGAGTGAGTGAGTGAAATGAAT GAGAAGATGAGGTGTTTGAGTTTTTGTGTGGTCCACGCTTGCTTTCAGGTTTTATTTAGTAGAAATGGTTCTTCCTGATC GACTTTAGAACTCAATTTTTTTATATATATTGAATTCTTTTCATTTTATTATATGAAAATTTTGAGTAATGATTTTTCCT CAAAGGGAACTACATTTTTAATTTTATTTTAAAAATAAATGCTTAAATAAAAATAGTTCCAAAATTAGATAAAAGCATTA AATTCCCAACCATCATATGAATTTTCCGGCTCGAACATGATTGCCTCCGAAAGAAGAAACCTGACTCAAACCAAAAAAAT AAAAATTATGGTTACCAAATTGCGGACAACTGCGGGTAGATGCGGCCGCAATTACATTTGGAAATCCAATTTGAACTCAA GCCTCTAATTTATTTCTTGCTGTCATCTTAAGATCTCTTTTGTAGTCAATAAATTATATTACTTTTGTCAGGAAAACAAC ATTATGCAGCAGTTTGCCTTGTACACTACACTTTAAAAACTTTTTTATTTCTTTCTGAAAGGGCACATGATTCAGTTAAA TTAGTTGGTTTTAGTTAAAATTTGATATTGCTGTTTTTCCTGTCATTCAAGTTTGTTGCTTGAGTAAATGGTTTGGTTAA AATTACTTATTCCTGTTTTTTTCCTGTTATTTGTGTTAGGTACTTGAGTTGAGTCTATACCAAAAAAAAAATGATACTAG AGTTGAGTTCTCATTAGTCATTACTGAAACTAGTGTGTTTTTCTTTATAAGCACTGAAACTAGTGTGTATATGCATCTAT ATAGCACATTTCTTCTCTCAATTCCTTTCCTGTTTCGTTCCTCTAAGTTCAAAATTGACCAAAGTACCAAGCTAGTAAAA GCATGTAGTAGCATCTCCAGTTTCACCCTTCCTGACAGTATAATTGAAATTATGGTCATAAAATGCAGGCAACAATCTAT ACAGCAGAAGATCCAATGCTAGCAAATTATGTACCAGTATATGTGATGCTCCAAGTATGTAATAAACCTTAAACTTCTGT CCACCTAACATACCTATGCAACATATGAATGTGTTGTGTTACATTTTAAAAATGCTTTGGTGTTTCTACCAGCTAGGAGT TATCTCAAATGACAATGTCTTACAAGACCGGTACGGACTTGAGAAACAGCTGAGGGAGCTACACGCCGCAGGCGTTGATG GGGTTATGGTTGATGTCTGGTGGGGTATTGTAGAATCAGAGGGGCCTCAGCAGTATGATTGGTCTGCTTACAGGGACTTG TTTCAGCTGGTTCAAGATTGCAAATTGAAGTTGCAAGTTATCATGTCATTTCACCAATGTGGAGGGAATGTTGGAGATTC TGTTTTTATCCCATTACCCAAATGGGTGCTTGAAGTTGGGGATTCAAACCCTGATATCTTCTACACCAATCGCTCAGGTA TCAGGAACAAGGAATGTCTGTCACTTGGTGTGGACGACATACCTCTTTTTCATGGAAGAACTCCTATACAGGTCAGCTTC TTTAAATTTTTTATTTCATATATGTTCTCGCTATTTCTGAAATACAATTCTACATGTTAGTTTCTCAAAGCTCAAGTTTA ACCAAGTCCTATCTAATATACACACAGTTTGGTTGGTCATATAATGAAAGAAGCCTATTTTGGTTGGTCATTCTGGCTAC TGATTGAAGAGATCAACAATAGCTAACTTCCCAGTTCCTCTAGACTAAAGGCAGTGATTGTTAATGTTCATATGTTTACT TGGTGTTAGCATTGGCTGTTTGGTGCAGATGTATGGTGACTATATGAGGAGTTTCAGAGAGAATATGGCAGATTTTTTAG AATCTGAGCTCATGATAGACATTGAAGTAGGACTTGGCCCTGCGGGAGAACTCAGATATCCTTCTTACTCATATTGTACA GGGTGGAAATTTCCTGGTATAGGAGAGTTTCAGGTGAGTAAAGACTTTTTTGCTGTAACAACTTATCCATAGGACCATAT AATATTGGGTTAATATCACTTGAAACAAATATGGTTAAGCTTGATGAGGCTTTTCAATTCTCAAACTTCTTCTGTAATCT TGCAGTGTTATGACAAATATCTTGAAGCTCAATTCAAAGGGGCTGTAGCTGCGCTAGGCCATCCTGAATGGGAGCTGCCT GATAATGCTGGGGAATGCAATTCTACACCTGAATCTACTGAATTTTTCAGATCACAAGGAACCTACCTAACAGACCAGGG GATTATCTTTCTTACATGGTATTCCAGCATATTGGTGATGCACGGTGATGCGATCATGGATGAAGCTAACAAAGCATTTG TAGGCTGCAAAGTGAAGTTAGCGGCAAAAGTAAGATCATAAATATATATATGGTAAATTTGCAAGCACCTTTGTTTTTGT TGCATCAATCTGCTGACAGTTTCCTATAAAAACAGGTTTCTGGAATCCACTGGTGGTACAGAACAGAAAACCATGCTGCA GAGCTCACTGCAGGATACTACAACTTAAATTATAGAGACGGATACCGTCCGATAGCAAGGATGCTCAACCGACATGGTGC AATTCTAAATTTTACATGCCTTGAGATGAGAAATTGTGAGCAAGTTGAAGAAGCCAAAAGCGGTCCCCAGGAACTTGTTC AGCAGGTTATTCATTTCAACAACTTAAATTAAAACCCTATCTGATATACTCTCTACCAAATTGAAGATGTCAGTTATTAT CATTTGTTTATTCTCATGCAGGTCCTAAGTACAGGCTGGAGGGAGAACCTTGAAGTTGCAGGAGAAAATGCACTTCCGCG GTATGATCGCGAAGCTTACAACCAAATCCTTCTGAATGCTAGACCAAATGGTGTGAACAGACATAGCCCTCCAAAACTGA GGATGTATGGCGTGACATACCTTCGTTTGACAGATGAGCTATTCCAGGAAACAAATTTTCAATTATTCAAAACATTTGTG AGAAGGATGCATGCTAATCAGGTTTGCACTTGCCTTTAATTAAAGACTATGATGATATTTTCATACTTTTAATGTTTGAA GCTTAGTAATGAAAGGTTACCCCCAAAATGCATTTGTTTGTAGGATTACTGTTCAGACCCTGAGAGATACTGTCATTACA CGTTTCCTATGCAGCGATCAAAACCGTATCTGGGGACTCTTACTCACGGAACCGAACCAGTGCTGCAGCCATATCCATGG AATAATGAAACAGATATGAGCATTGAAGGTCCTGGTTTCTTTGCTGATATTGTAGCATTTATCTGGCGTATTTTTTGTAA TAAAAAAAGAAACTAGGAAGGTAAATAGTTTCATATATTTGGCTCCTACATAGAGGCTGCTGCTGCTGCTGCGCCTTCCC TTTGTAGTTTGTACAAAAGCTCCTTATCACACTATACAGTCTATACTGGCCGATTTTACATGTGAATGTGATCTTTATGT CTATAAAAGTCTACAATTCAGCACAGCTTTTGCAAACTGAACCAAATAATGGTAATGAATGGTGATAGTATAAATTAATT TTTCATTGCAACTAAGTAAGTGCTAAATGACAGGAACATAAAAAGTTTAGACA
CDS sequence (LotjaGi3g1v0192600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGACGTTTCATCTTCAAGAAAGGTATTTTCAACAGGGAATTACAGCATGGAATGGAGGAGGAGGATCCACAGCTAT ACGTGCAGAGAGAGCAAGGAAGCCAAAAGCCTCCTTCTTCAAATTGGATCCCAAACACGTCAAGAACCACCACAAAAATC AAAATCATCGCGCTGCAGCTGCTGTGTGTTCCGCATTGTTCAAATCTGCAGTTGCTGAACCACAAGCAACAATCTATACA GCAGAAGATCCAATGCTAGCAAATTATGTACCAGTATATGTGATGCTCCAACTAGGAGTTATCTCAAATGACAATGTCTT ACAAGACCGGTACGGACTTGAGAAACAGCTGAGGGAGCTACACGCCGCAGGCGTTGATGGGGTTATGGTTGATGTCTGGT GGGGTATTGTAGAATCAGAGGGGCCTCAGCAGTATGATTGGTCTGCTTACAGGGACTTGTTTCAGCTGGTTCAAGATTGC AAATTGAAGTTGCAAGTTATCATGTCATTTCACCAATGTGGAGGGAATGTTGGAGATTCTGTTTTTATCCCATTACCCAA ATGGGTGCTTGAAGTTGGGGATTCAAACCCTGATATCTTCTACACCAATCGCTCAGGTATCAGGAACAAGGAATGTCTGT CACTTGGTGTGGACGACATACCTCTTTTTCATGGAAGAACTCCTATACAGATGTATGGTGACTATATGAGGAGTTTCAGA GAGAATATGGCAGATTTTTTAGAATCTGAGCTCATGATAGACATTGAAGTAGGACTTGGCCCTGCGGGAGAACTCAGATA TCCTTCTTACTCATATTGTACAGGGTGGAAATTTCCTGGTATAGGAGAGTTTCAGTGTTATGACAAATATCTTGAAGCTC AATTCAAAGGGGCTGTAGCTGCGCTAGGCCATCCTGAATGGGAGCTGCCTGATAATGCTGGGGAATGCAATTCTACACCT GAATCTACTGAATTTTTCAGATCACAAGGAACCTACCTAACAGACCAGGGGATTATCTTTCTTACATGGTATTCCAGCAT ATTGGTGATGCACGGTGATGCGATCATGGATGAAGCTAACAAAGCATTTGTAGGCTGCAAAGTGAAGTTAGCGGCAAAAG TTTCTGGAATCCACTGGTGGTACAGAACAGAAAACCATGCTGCAGAGCTCACTGCAGGATACTACAACTTAAATTATAGA GACGGATACCGTCCGATAGCAAGGATGCTCAACCGACATGGTGCAATTCTAAATTTTACATGCCTTGAGATGAGAAATTG TGAGCAAGTTGAAGAAGCCAAAAGCGGTCCCCAGGAACTTGTTCAGCAGGTCCTAAGTACAGGCTGGAGGGAGAACCTTG AAGTTGCAGGAGAAAATGCACTTCCGCGGTATGATCGCGAAGCTTACAACCAAATCCTTCTGAATGCTAGACCAAATGGT GTGAACAGACATAGCCCTCCAAAACTGAGGATGTATGGCGTGACATACCTTCGTTTGACAGATGAGCTATTCCAGGAAAC AAATTTTCAATTATTCAAAACATTTGTGAGAAGGATGCATGCTAATCAGGATTACTGTTCAGACCCTGAGAGATACTGTC ATTACACGTTTCCTATGCAGCGATCAAAACCGTATCTGGGGACTCTTACTCACGGAACCGAACCAGTGCTGCAGCCATAT CCATGGAATAATGAAACAGATATGAGCATTGAAGGTCCTGGTTTCTTTGCTGATATTGTAGCATTTATCTGGCGTATTTT TTGTAATAAAAAAAGAAACTAG
Protein sequence (LotjaGi3g1v0192600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTFHLQERYFQQGITAWNGGGGSTAIRAERARKPKASFFKLDPKHVKNHHKNQNHRAAAAVCSALFKSAVAEPQATIYT AEDPMLANYVPVYVMLQLGVISNDNVLQDRYGLEKQLRELHAAGVDGVMVDVWWGIVESEGPQQYDWSAYRDLFQLVQDC KLKLQVIMSFHQCGGNVGDSVFIPLPKWVLEVGDSNPDIFYTNRSGIRNKECLSLGVDDIPLFHGRTPIQMYGDYMRSFR ENMADFLESELMIDIEVGLGPAGELRYPSYSYCTGWKFPGIGEFQCYDKYLEAQFKGAVAALGHPEWELPDNAGECNSTP ESTEFFRSQGTYLTDQGIIFLTWYSSILVMHGDAIMDEANKAFVGCKVKLAAKVSGIHWWYRTENHAAELTAGYYNLNYR DGYRPIARMLNRHGAILNFTCLEMRNCEQVEEAKSGPQELVQQVLSTGWRENLEVAGENALPRYDREAYNQILLNARPNG VNRHSPPKLRMYGVTYLRLTDELFQETNFQLFKTFVRRMHANQDYCSDPERYCHYTFPMQRSKPYLGTLTHGTEPVLQPY PWNNETDMSIEGPGFFADIVAFIWRIFCNKKRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 547 | 528 | 1.4E-302 | – | |
| PANTHER | 20 | 547 | 528 | 1.4E-302 | ||
| Gene3D | 79 | 572 | 494 | 1.3E-219 | – | |
| SUPERFAMILY | 85 | 574 | 490 | 6.19E-192 | ||
| Pfam | 93 | 515 | 423 | 1.7E-118 | ||
| PRINTS | 124 | 138 | 15 | 1.5E-87 | ||
| PRINTS | 145 | 163 | 19 | 1.5E-87 | ||
| PRINTS | 167 | 188 | 22 | 1.5E-87 | ||
| ProSitePatterns | 171 | 179 | 9 | - | ||
| PRINTS | 250 | 259 | 10 | 2.2E-34 | ||
| ProSitePatterns | 260 | 270 | 11 | - | ||
| PRINTS | 260 | 282 | 23 | 1.5E-87 | ||
| PRINTS | 332 | 351 | 20 | 1.5E-87 | ||
| PRINTS | 368 | 384 | 17 | 1.5E-87 | ||
| PRINTS | 385 | 396 | 12 | 1.5E-87 | ||
| PRINTS | 403 | 426 | 24 | 1.5E-87 | ||
| PRINTS | 406 | 416 | 11 | 2.2E-34 | ||
| PRINTS | 440 | 462 | 23 | 1.5E-87 | ||
| PRINTS | 448 | 457 | 10 | 2.2E-34 | ||
| PRINTS | 462 | 471 | 10 | 2.2E-34 | ||
| PRINTS | 477 | 493 | 17 | 2.2E-34 | ||
| PRINTS | 495 | 509 | 15 | 2.2E-34 | ||
| PRINTS | 510 | 524 | 15 | 2.2E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Polysaccharide catabolic process | The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. | ||
| Molecular function | Beta-amylase activity | Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains. |
Expression pattern of LotjaGi3g1v0192600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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